BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09130.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478226 jgi|Araly1|478226|fgenesh2_kg.3__927__AT3G09130.1 1537 0.0
> Ahg478226 jgi|Araly1|478226|fgenesh2_kg.3__927__AT3G09130.1
Length=1203
Score = 1537 bits (832), Expect = 0.0
Identities = 1077/1194 (90%), Gaps = 21/1194 (2%)
Strand=Plus/Plus
Query 1 ATGCCGAAACATATCA-TTGATGAGATTGAATCTCTCTCCCTTGCCACTGGCTTTATCCT 59
||| ||||||| || | ||||||||||| ||||| ||||| | |||||||| | |
Sbjct 1 ATGTCGAAACAGAT-AGCTGATGAGATTGGTTCTCTTTCCCTCGTCACTGGCTGCAAAAT 59
Query 60 CAAGAATGGGGATTTTACTGAGGAGAAAAGCTTGCTGGTGAAGCCAACCATGGGCGGGAC 119
|||||||| |||||| ||||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 60 CAAGAATGAGGATTTAACTGAAGAGAAGAGCTTAATGGTGAAGCCAACCATGGGCAGGAC 119
Query 120 CTGGCACTGGTCTCCTATAAAAGGTCTTCACTCACAGGATTCAATCAGGAAGACTCGTGC 179
||||||||||||||| ||| | ||||||||||||||||||||||||||| | |||| |||
Sbjct 120 CTGGCACTGGTCTCCAATAGAGGGTCTTCACTCACAGGATTCAATCAGGCATACTCATGC 179
Query 180 CTACATATTGCAGGAGATTGCAAGGATGACCATCTATCCCGAGGCCGGTGTCAGTCC-TA 238
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 180 CTATATATTGCAAGAGATTGCAAGGATGACCATCTATCCCGAGGCCGGTGTCAG-CCATA 238
Query 239 CCTTGAGGCGCAAGAAGGGTATTGTCATTGGGGTGGCCAGAGCTGTGTCTACTGAGCTGT 298
||||||| | ||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 239 CCTTGAGACACAAGAAGGGTATTGTCATTGGGGTGGCGAGAGCCGTGTCCACTGAGCTGT 298
Query 299 ATCACATTGTCGAGAATGACCTCATAGA-GGAGGAGATGGACACAGCGAAACTGGCGGTG 357
|||||||||| || |||||||||||| | |||||||||||||||||||||| |||| |
Sbjct 299 ATCACATTGTTGACAATGACCTCATA-ATGGAGGAGATGGACACAGCGAAATTGGCAACG 357
Query 358 GGATACGAT-GGCGAAACCATAGTGATCAAAAACGACGTGGACTCAAAGTGGAAGGAGGA 416
| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAATACGATAGG-AAAACCATAGTGATCAAAAACGACGTGGACTCAAAGTGGAAGGAGGA 416
Query 417 GCTGTCCAAACCTTTGAACTTGTCTGAAACCGAAAATAAAGTGATTCAAAGACTGCTCTT 476
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTGTCCAAACCTTTGAAATTGTCTGAAACCGAAAATAAAGTGATTCAAAGACTGCTCTT 476
Query 477 AATCTCCCATGGAGTCATTCCCCTCCAGGGCTACTCATTGGTCACGACTTCCCACCACTA 536
|||| | |||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 477 AATCGCTCATGGAGTGATTCCCCTCCAGGGGTACTCATTGGTCACGACTTCCCACCATTA 536
Query 537 CAATGACAAGTCGAAGAGAGCATTTTCCGCGGTGGAGAGGCAGtttttttCTCGCTGTGA 596
||||||| |||||||||||||||||||| |||||||||||| || |||||||||| |||
Sbjct 537 CAATGACCAGTCGAAGAGAGCATTTTCCATGGTGGAGAGGCAATTCTTTTCTCGCTTTGA 596
Query 597 CCAATTATCTTGGTGGAAAGAGGATGAAGAAGCCTTAAGGGACGCTATGTGGCACAAGGC 656
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 597 CCAATTCTCTTGGTGGAAAGAGGATGAAGAGGCCTTAAGGGACGCCATGTGGCACAAGGC 656
Query 657 TGGACATCCAGTGAAGATATCTTTCAAGAAGGAGATTGCCTGCAGTATTACTATCAAGCA 716
|||||| |||||||||||||||||||||||||||||||| ||||||| ||| || |||||
Sbjct 657 TGGACACCCAGTGAAGATATCTTTCAAGAAGGAGATTGCATGCAGTAATACCATTAAGCA 716
Query 717 GAGTCTGGCTAACGCAGGTATTGGGAGCG-TCGCATGTAGGCTCCCTGCCACTGAAGACG 775
|||||| ||||||||||||| ||||| | |||| |||||||||||| ||||||||||
Sbjct 717 GAGTCTAATTAACGCAGGTATTCAGAGCGCT-GCATTTAGGCTCCCTGCTACTGAAGACG 775
Query 776 TCGTT-TGGAAGGCTGAAGCCTACAGGAACCTTTTAAAAACTTTGTCACCTATCTTCGAT 834
|||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 776 CCGTTATG-AAGGCTGGAGCCTACAGGAAACTTTTAAAAACTTTGTCACCTATCTTCGAT 834
Query 835 GATGAGGTCAAGTGGGAGGCTCTTGATGAGATGTTATCATATCTGAATCATTTCTCCGCT 894
||||||||||||||||||||||||||||||||| ||||||||||| || |||| || |||
Sbjct 835 GATGAGGTCAAGTGGGAGGCTCTTGATGAGATGCTATCATATCTGGATAATTTTTCAGCT 894
Query 895 GCTAGGCCAACAGAGGTAGTGACCGTTCACAACGCGCCTACTCACCTCATGAGCTTGGAC 954
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct 895 GCTAGGCCAACAGAGGTAGTTACCGTTCACAACGCGCCTACTCACCTCCTGAGCATGGAC 954
Query 955 ACGAGGGAGAAGGTCGTGACATGGATTGCACAATGGTGCTCTCAGAACGCTGAAAAAGTA 1014
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACGAGGGAGAAGGTGGTGGTTTGGATTGCACAATGGTGCTCTCAGAACGCTGAAAAAGTA 1014
Query 1015 GCTATTTGTTTAGGCTTTCACACGGCCTTG-CTTGAAAACGCTGGAAAGTTTCCC-GGAC 1072
|||||||||||||| |||||||||||| || || ||||| |||||||||||| | || |
Sbjct 1015 GCTATTTGTTTAGGGTTTCACACGGCCATGTCT-GAAAAGGCTGGAAAGTTTGTCTGG-C 1072
Query 1073 CCTCCTACTCGCTCA-TGGTACTCA-GA-A-CCAATGTTGACTCCTACATCTTAGGGACA 1128
||||| |||||||| || |||||| || | ||||||||||||||| ||||||||||| |
Sbjct 1073 CCTCCCACTCGCTCTCTG-TACTCAAGAGAACCAATGTTGACTCCTGCATCTTAGGGAGA 1131
Query 1129 AAGCTTTTCTCTGATTATACCGTCTTCAAGGCCAAGCTTCGTCAACTCATGGAC 1182
|| |||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1132 AAACTTTTCTCTGATTACACTGTCTTCAAGGCCAAGCTTCGTCAAATCATGGAC 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5