BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09140.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478227 jgi|Araly1|478227|fgenesh2_kg.3__928__AT3G09140.2 880 0.0
Ahg925838 jgi|Araly1|925838|scaffold_201399.1 73.1 7e-12
> Ahg478227 jgi|Araly1|478227|fgenesh2_kg.3__928__AT3G09140.2
Length=1556
Score = 880 bits (476), Expect = 0.0
Identities = 623/692 (90%), Gaps = 18/692 (3%)
Strand=Plus/Plus
Query 15 AATCTCCAATGGCTGAGAGTACAAAGTCAAAAAAGCTAAGTGTGAGACTTCTCATAGATG 74
||||||| ||||||||||||||| || || | ||||||||| ||||||||||||||||||
Sbjct 1 AATCTCCGATGGCTGAGAGTACAGAGACAGAGAAGCTAAGTCTGAGACTTCTCATAGATG 60
Query 75 AACTGAAGAACAAGGTTGTCTTGGCTGAATCTGGTAAGGATTTTGTTGATGTTCTCTTTA 134
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AACAGAAGAACAAGGTTGTCTTGGCTGAATCTGGTAAGGATTTTGTTGATGTGCTCTTTA 120
Query 135 GTTTTCTCGCTCTTCCCATGGGAACTATTGTTAGATTGCTTGAGAAACATCAAAAATCGC 194
|||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 121 GTTTTCTCGCACTTCCCATGGGAACTATTGTAAGATTGCTTGAGGAACATCGGAAATCGC 180
Query 195 CTCAAGTGGGTATAGGATGTTTCAACAATCTTTACAAAAGTGTTTCAGAGATGGATCTTG 254
||||||||| | |||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 181 CTCAAGTGGTTGTAGGATGTTTTAACAATCTTTACAAAAGTGTTTCAGAGATGGGTATTG 240
Query 255 AGAGTTTTCAGACAGAAGCATGTAAGCAAGTTCTACTGTATCCTAGGAGTGTGAATCTTG 314
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AGAGTTTTCAGACAGAAGCATGTAAGCAAATTCTACTGTATCCTAGGAGTGTGAATCTTG 300
Query 315 AGAAGTTCAGAAATATGAAGTTGAAAATTGATGACACTAG-GGCTGTTAAGTACTTTGTT 373
|||||| |||||| || ||||||||||| |||||||| || |||||| ||||||||||||
Sbjct 301 AGAAGTACAGAAAGATTAAGTTGAAAATAGATGACAC-AGAGGCTGTCAAGTACTTTGTT 359
Query 374 TGCTCAGGC-TT---TA-A-AGAATCCTGCAGA-CATCATTATAGCATTTCGAACACGGA 426
|||||||| || || | ||||||||||||| | | ||||||||||||||||| |||
Sbjct 360 TGCTCAGGTGTTCACTACAGAGAATCCTGCAGAACTTT-TTATAGCATTTCGAACAAGGA 418
Query 427 GGAATGTGAATGTGGAGAA-ATTGTTGA-CTCGAAGGTTGTCAAAAGAGTGATGAATCGG 484
|||||||||||||||||| || | || |||| | |||||| |||| |||||||| ||
Sbjct 419 GGAATGTGAATGTGGAGAGTAT-GA-GAACTCGTATTTTGTCAGAAGATTGATGAATTGG 476
Query 485 GAGATTAAGGGACTTGAAGAAG-AGCAAGTTCAAGGAAGGATTTTGAGAAAGGATAATGA 543
|||||| | ||| |||| ||| | |||||||||||||| ||||| ||||||||||||||
Sbjct 477 GAGATTCTGAGACCTGAA-AAGGAACAAGTTCAAGGAAGCATTTTTAGAAAGGATAATGA 535
Query 544 TGGAGtttttttCAGCTGTAAAGCTTCTTCTTTCATTATAACAGATGATCTGAAAGTGGA 603
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGGAGTTTTTGTCAGCTGTAAAGCTTCTTCTTTCATTATAACAGATGATCTGAAAGTGGC 595
Query 604 GGCGAGCTCTATGGATAATGTTTTGAATACTCTCAGAGGCTTAGGCTACGCAGATACTTC 663
|||||||||||||||| ||||||||||||||||||||||||||||||||| | || || |
Sbjct 596 GGCGAGCTCTATGGATTATGTTTTGAATACTCTCAGAGGCTTAGGCTACGAAAATTCT-C 654
Query 664 -CAAGCTCAGTGAAATACTTCTTCATGTCGGT 694
||||||| |||||||||||||| ||||||||
Sbjct 655 ACAAGCTCGGTGAAATACTTCTTGATGTCGGT 686
Score = 479 bits (259), Expect = 3e-134
Identities = 360/405 (89%), Gaps = 22/405 (5%)
Strand=Plus/Plus
Query 895 TCCAACTTTGCAAGGATCTGGAGATGGAGCAGTACCAGGCCAAACCATAACTTTTAAAGC 954
|||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 755 TCCATCTTTGCAAGGATCTGGAGACGGAGCAGGACCAGGCCAAACCATAACTTTTAAAGC 814
Query 955 ATTTGTTAGAAAACCGAACATCAAGATTCTCTGTGTTGAATGTGGAGCAGACTTCATTGA 1014
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATTTGTTAGAAAACCGGACACCAAGATTCTCTGTGTTGAATGTGGAGCAGACTTCATTGA 874
Query 1015 TCTTCTTTTCAC-TTTTCTAGCTTTGCCACTTGAATCTGTCTGGAACATCTCTGCAGGGA 1073
|||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| || |
Sbjct 875 TCTTCTTTTCACCTTTT-TAGCTTTGCCACTTGAATCCGTCTGGGACATCTCTGGAGACA 933
Query 1074 ATATCAGTTTAGGTTGTATTGGAAACTTATTCAGAAGCTTCAAGAG----AAT------- 1122
|||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 934 GTATCAGTTTAGGCTGTATTGGAAACTTATTCAGAAGCTTCAAGAGTTTGAATGAAGGAA 993
Query 1123 -TGATGCTTCATCCTCTTCCAAAA-CCAAGCTTCCTTCGTTTTATAGTTGCCCTAAACAG 1180
||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||
Sbjct 994 CTGATGCTTCATCCTCTTCCAAAAGCCA-GCTCCCTTCGTTTTATAGCTGCCCTAAACAG 1052
Query 1181 TTACTTGATGTCGTCACTGAGCAACAAGAGATCTATTGCAGTTTCAA--G-TGTGTCGTT 1237
||||||||||||||||||||| ||||||||||||||||||||||||| | | ||| | |
Sbjct 1053 TTACTTGATGTCGTCACTGAGAAACAAGAGATCTATTGCAGTTTCAATCGCTCTGTTGAT 1112
Query 1238 GAAACTAATAATGAGTATGACTTTAAGTTCACTAGAAAGATGCCT 1282
|||| || || ||||||||||||||||||||| |||| ||||
Sbjct 1113 AAAACC--TA-TGGGTATGACTTTAAGTTCACTAGGAAGAGGCCT 1154
Score = 398 bits (215), Expect = 1e-109
Identities = 314/359 (87%), Gaps = 18/359 (5%)
Strand=Plus/Plus
Query 1377 AAAACA-CAAGGTTTTTGGTAACTGATGATTTGGTTATCAAACCGAAGAACTTGGTCTCA 1435
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1161 AAAACAGCAAGGTTTTTGGTAACTGATGATTTGGTTATCAAACCGAAGAACTTGGTTTCA 1220
Query 1436 AACATTAGTTTGCTAAAGTTGAACATGCACTTGGATAAAGAAGATGTTGAAGAACATGTG 1495
||||||||||||||||| ||||| |||||| |||| || ||||||||||||||||| |||
Sbjct 1221 AACATTAGTTTGCTAAATTTGAAAATGCACATGGAGAAGGAAGATGTTGAAGAACAAGTG 1280
Query 1496 ATCACCATTGGGAAACTAGAGGCTATCAGTTTGTTAAGAGCTTCCCTGATGACATCCTCA 1555
|||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1281 ATCACCATAGGGAAACTAGAGGCTATCAGTTTGTTAAGAGCTTCTGTGATAACATCCTCA 1340
Query 1556 GCTTTAACTAGTTCTTTCTGGAGCTTAATCTCGAAGAAGGCCAAAGCAGAGA-----CTC 1610
|||||||||| || |||||||||||||||| ||||||||||||||| ||| | |||
Sbjct 1341 GCTTTAACTACTTGTTTCTGGAGCTTAATCGCGAAGAAGGCCAAAGAAGAAATTTAACTC 1400
Query 1611 AGTAGTTATGTTCATCAATATGTTCCATCTTCTATTTTAACTTTTATCAAAAAACACAAT 1670
||||||||||| | || ||| | |||| ||||||||||||| |||||||||||| ||
Sbjct 1401 AGTAGTTATGTAC--CAGTAT---C-ATCTCCTATTTTAACTTT-ATCAAAAAACACTAT 1453
Query 1671 TTGT-C--GTCATGCTTATCTTCTTACTGAATAAA-TTACATTGAACCTGAGTCAATTA 1725
| || | |||||| ||||||||||| ||||| || || ||| || ||||||||||||
Sbjct 1454 TAGTACTCGTCATGTTTATCTTCTTATTGAATGAAGTT-CATCCAAACTGAGTCAATTA 1511
> Ahg925838 jgi|Araly1|925838|scaffold_201399.1
Length=1409
Score = 73.1 bits (39), Expect = 7e-12
Identities = 79/98 (81%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 46 AAAGCTAAGTGTGAGACTTCTCA-TAGATGAACTGAAGAACAAGGTTGTCTTGGCT-GAA 103
|||| ||||| ||| | |||| | | ||| || ||| |||||| |||| |||| | |||
Sbjct 27 AAAGATAAGTCTGAAAATTCT-AGTTGATAAAGAGAAAAACAAGATTGTTTTGG-TGGAA 84
Query 104 TCTGGTAAGGATTTTGTTGATGTTCTCTTTAGTTTTCT 141
| |||| |||||||||||||||||||||||||||||
Sbjct 85 GCACGTAAAGATTTTGTTGATGTTCTCTTTAGTTTTCT 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5