BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09140.1 Length=1856 Score E Sequences producing significant alignments: (Bits) Value Ahg478227 jgi|Araly1|478227|fgenesh2_kg.3__928__AT3G09140.2 880 0.0 Ahg925838 jgi|Araly1|925838|scaffold_201399.1 73.1 7e-12 > Ahg478227 jgi|Araly1|478227|fgenesh2_kg.3__928__AT3G09140.2 Length=1556 Score = 880 bits (476), Expect = 0.0 Identities = 623/692 (90%), Gaps = 18/692 (3%) Strand=Plus/Plus Query 15 AATCTCCAATGGCTGAGAGTACAAAGTCAAAAAAGCTAAGTGTGAGACTTCTCATAGATG 74 ||||||| ||||||||||||||| || || | ||||||||| |||||||||||||||||| Sbjct 1 AATCTCCGATGGCTGAGAGTACAGAGACAGAGAAGCTAAGTCTGAGACTTCTCATAGATG 60 Query 75 AACTGAAGAACAAGGTTGTCTTGGCTGAATCTGGTAAGGATTTTGTTGATGTTCTCTTTA 134 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 AACAGAAGAACAAGGTTGTCTTGGCTGAATCTGGTAAGGATTTTGTTGATGTGCTCTTTA 120 Query 135 GTTTTCTCGCTCTTCCCATGGGAACTATTGTTAGATTGCTTGAGAAACATCAAAAATCGC 194 |||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||| Sbjct 121 GTTTTCTCGCACTTCCCATGGGAACTATTGTAAGATTGCTTGAGGAACATCGGAAATCGC 180 Query 195 CTCAAGTGGGTATAGGATGTTTCAACAATCTTTACAAAAGTGTTTCAGAGATGGATCTTG 254 ||||||||| | |||||||||| ||||||||||||||||||||||||||||||| | ||| Sbjct 181 CTCAAGTGGTTGTAGGATGTTTTAACAATCTTTACAAAAGTGTTTCAGAGATGGGTATTG 240 Query 255 AGAGTTTTCAGACAGAAGCATGTAAGCAAGTTCTACTGTATCCTAGGAGTGTGAATCTTG 314 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 AGAGTTTTCAGACAGAAGCATGTAAGCAAATTCTACTGTATCCTAGGAGTGTGAATCTTG 300 Query 315 AGAAGTTCAGAAATATGAAGTTGAAAATTGATGACACTAG-GGCTGTTAAGTACTTTGTT 373 |||||| |||||| || ||||||||||| |||||||| || |||||| |||||||||||| Sbjct 301 AGAAGTACAGAAAGATTAAGTTGAAAATAGATGACAC-AGAGGCTGTCAAGTACTTTGTT 359 Query 374 TGCTCAGGC-TT---TA-A-AGAATCCTGCAGA-CATCATTATAGCATTTCGAACACGGA 426 |||||||| || || | ||||||||||||| | | ||||||||||||||||| ||| Sbjct 360 TGCTCAGGTGTTCACTACAGAGAATCCTGCAGAACTTT-TTATAGCATTTCGAACAAGGA 418 Query 427 GGAATGTGAATGTGGAGAA-ATTGTTGA-CTCGAAGGTTGTCAAAAGAGTGATGAATCGG 484 |||||||||||||||||| || | || |||| | |||||| |||| |||||||| || Sbjct 419 GGAATGTGAATGTGGAGAGTAT-GA-GAACTCGTATTTTGTCAGAAGATTGATGAATTGG 476 Query 485 GAGATTAAGGGACTTGAAGAAG-AGCAAGTTCAAGGAAGGATTTTGAGAAAGGATAATGA 543 |||||| | ||| |||| ||| | |||||||||||||| ||||| |||||||||||||| Sbjct 477 GAGATTCTGAGACCTGAA-AAGGAACAAGTTCAAGGAAGCATTTTTAGAAAGGATAATGA 535 Query 544 TGGAGtttttttCAGCTGTAAAGCTTCTTCTTTCATTATAACAGATGATCTGAAAGTGGA 603 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TGGAGTTTTTGTCAGCTGTAAAGCTTCTTCTTTCATTATAACAGATGATCTGAAAGTGGC 595 Query 604 GGCGAGCTCTATGGATAATGTTTTGAATACTCTCAGAGGCTTAGGCTACGCAGATACTTC 663 |||||||||||||||| ||||||||||||||||||||||||||||||||| | || || | Sbjct 596 GGCGAGCTCTATGGATTATGTTTTGAATACTCTCAGAGGCTTAGGCTACGAAAATTCT-C 654 Query 664 -CAAGCTCAGTGAAATACTTCTTCATGTCGGT 694 ||||||| |||||||||||||| |||||||| Sbjct 655 ACAAGCTCGGTGAAATACTTCTTGATGTCGGT 686 Score = 479 bits (259), Expect = 3e-134 Identities = 360/405 (89%), Gaps = 22/405 (5%) Strand=Plus/Plus Query 895 TCCAACTTTGCAAGGATCTGGAGATGGAGCAGTACCAGGCCAAACCATAACTTTTAAAGC 954 |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 755 TCCATCTTTGCAAGGATCTGGAGACGGAGCAGGACCAGGCCAAACCATAACTTTTAAAGC 814 Query 955 ATTTGTTAGAAAACCGAACATCAAGATTCTCTGTGTTGAATGTGGAGCAGACTTCATTGA 1014 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 815 ATTTGTTAGAAAACCGGACACCAAGATTCTCTGTGTTGAATGTGGAGCAGACTTCATTGA 874 Query 1015 TCTTCTTTTCAC-TTTTCTAGCTTTGCCACTTGAATCTGTCTGGAACATCTCTGCAGGGA 1073 |||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| || | Sbjct 875 TCTTCTTTTCACCTTTT-TAGCTTTGCCACTTGAATCCGTCTGGGACATCTCTGGAGACA 933 Query 1074 ATATCAGTTTAGGTTGTATTGGAAACTTATTCAGAAGCTTCAAGAG----AAT------- 1122 |||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 934 GTATCAGTTTAGGCTGTATTGGAAACTTATTCAGAAGCTTCAAGAGTTTGAATGAAGGAA 993 Query 1123 -TGATGCTTCATCCTCTTCCAAAA-CCAAGCTTCCTTCGTTTTATAGTTGCCCTAAACAG 1180 ||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||| Sbjct 994 CTGATGCTTCATCCTCTTCCAAAAGCCA-GCTCCCTTCGTTTTATAGCTGCCCTAAACAG 1052 Query 1181 TTACTTGATGTCGTCACTGAGCAACAAGAGATCTATTGCAGTTTCAA--G-TGTGTCGTT 1237 ||||||||||||||||||||| ||||||||||||||||||||||||| | | ||| | | Sbjct 1053 TTACTTGATGTCGTCACTGAGAAACAAGAGATCTATTGCAGTTTCAATCGCTCTGTTGAT 1112 Query 1238 GAAACTAATAATGAGTATGACTTTAAGTTCACTAGAAAGATGCCT 1282 |||| || || ||||||||||||||||||||| |||| |||| Sbjct 1113 AAAACC--TA-TGGGTATGACTTTAAGTTCACTAGGAAGAGGCCT 1154 Score = 398 bits (215), Expect = 1e-109 Identities = 314/359 (87%), Gaps = 18/359 (5%) Strand=Plus/Plus Query 1377 AAAACA-CAAGGTTTTTGGTAACTGATGATTTGGTTATCAAACCGAAGAACTTGGTCTCA 1435 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1161 AAAACAGCAAGGTTTTTGGTAACTGATGATTTGGTTATCAAACCGAAGAACTTGGTTTCA 1220 Query 1436 AACATTAGTTTGCTAAAGTTGAACATGCACTTGGATAAAGAAGATGTTGAAGAACATGTG 1495 ||||||||||||||||| ||||| |||||| |||| || ||||||||||||||||| ||| Sbjct 1221 AACATTAGTTTGCTAAATTTGAAAATGCACATGGAGAAGGAAGATGTTGAAGAACAAGTG 1280 Query 1496 ATCACCATTGGGAAACTAGAGGCTATCAGTTTGTTAAGAGCTTCCCTGATGACATCCTCA 1555 |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 1281 ATCACCATAGGGAAACTAGAGGCTATCAGTTTGTTAAGAGCTTCTGTGATAACATCCTCA 1340 Query 1556 GCTTTAACTAGTTCTTTCTGGAGCTTAATCTCGAAGAAGGCCAAAGCAGAGA-----CTC 1610 |||||||||| || |||||||||||||||| ||||||||||||||| ||| | ||| Sbjct 1341 GCTTTAACTACTTGTTTCTGGAGCTTAATCGCGAAGAAGGCCAAAGAAGAAATTTAACTC 1400 Query 1611 AGTAGTTATGTTCATCAATATGTTCCATCTTCTATTTTAACTTTTATCAAAAAACACAAT 1670 ||||||||||| | || ||| | |||| ||||||||||||| |||||||||||| || Sbjct 1401 AGTAGTTATGTAC--CAGTAT---C-ATCTCCTATTTTAACTTT-ATCAAAAAACACTAT 1453 Query 1671 TTGT-C--GTCATGCTTATCTTCTTACTGAATAAA-TTACATTGAACCTGAGTCAATTA 1725 | || | |||||| ||||||||||| ||||| || || ||| || |||||||||||| Sbjct 1454 TAGTACTCGTCATGTTTATCTTCTTATTGAATGAAGTT-CATCCAAACTGAGTCAATTA 1511 > Ahg925838 jgi|Araly1|925838|scaffold_201399.1 Length=1409 Score = 73.1 bits (39), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 46 AAAGCTAAGTGTGAGACTTCTCA-TAGATGAACTGAAGAACAAGGTTGTCTTGGCT-GAA 103 |||| ||||| ||| | |||| | | ||| || ||| |||||| |||| |||| | ||| Sbjct 27 AAAGATAAGTCTGAAAATTCT-AGTTGATAAAGAGAAAAACAAGATTGTTTTGG-TGGAA 84 Query 104 TCTGGTAAGGATTTTGTTGATGTTCTCTTTAGTTTTCT 141 | |||| ||||||||||||||||||||||||||||| Sbjct 85 GCACGTAAAGATTTTGTTGATGTTCTCTTTAGTTTTCT 122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69705148350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5