BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09150.2
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478229 jgi|Araly1|478229|fgenesh2_kg.3__930__AT3G09150.2 1978 0.0
Ahg922096 jgi|Araly1|922096|scaffold_103377.1 183 2e-45
> Ahg478229 jgi|Araly1|478229|fgenesh2_kg.3__930__AT3G09150.2
Length=1285
Score = 1978 bits (1071), Expect = 0.0
Identities = 1219/1288 (95%), Gaps = 20/1288 (2%)
Strand=Plus/Plus
Query 76 AAGAATTGAAGAGAGTGTCCGAGGAAGGAGACCTTTG-GTT-TCAGTTTGTGAGTCTTGT 133
||||||||||||||||||| ||||||||||||| ||| ||| ||| ||||||| | ||||
Sbjct 1 AAGAATTGAAGAGAGTGTCGGAGGAAGGAGACC-TTGAGTTATCAATTTGTGATTGTTGT 59
Query 134 TGTAATGGCTTTATCAATGGAGTTTGGGTTTTCAATTGGGTCATGCTTCAAGGCACCAAA 193
|||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 60 TGTAATGGCTTTGTCAATGGAGTCTGGATTTTCAATTGGGTCGTGCTTCAAGGCACCAAA 119
Query 194 CCCACCTGTTCTAATCTCTGCAAGCCCTAATAAGATCAATTTCACGTTGAGAAGGAGAAA 253
||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||
Sbjct 120 CCCTCCTGTTCTAATCTCTGCAAGCCCTAAGAAGATCAATTTCACGTCGAGAAGGAG-AA 178
Query 254 G-AAAAGATTCTTACTTAGAGTCTCTGCTGTGTCGTATAAGGAATTCGCAGAGTCTGCTT 312
| |||||||||||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 179 GTAAAAGATTCTTATTTAGAGTCTCTGCTGTTTCCTACAAGGAATTCGCAGAGTCTGCTT 238
Query 313 TAGAAGAAACCAGGAAAAGGATCGTTCTTGAACCTTCACATCTCCAGGAAAAGTATAGTA 372
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TAGAAGAAACCAGGAAAAAGATCGTTCTTGAACCTTCACATCTCCAGGAAAAGTATAGTA 298
Query 373 GCATGACAGGACTAGATGGTAAGACCGAACTTCAAATGCTTGCTTTTAAATCTTCAAAGA 432
||||||||||| | ||||| | ||| ||||||| ||||||||||||||||||||||||||
Sbjct 299 GCATGACAGGATTGGATGGGAGGACGGAACTTCGAATGCTTGCTTTTAAATCTTCAAAGA 358
Query 433 TTAGACTCTTGAGGAGTATGGCAATAGAGAATGAGACAATGCAGGTCTTTGACTTTGCGG 492
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 TTAGACTCTTGCGGAGTATGGCAATAGAGAATGAGACAATGCAGGTCTTTGACTTTGCAG 418
Query 493 GTTTCATGGAGCCTGAGTATGATACTCCCATATTCTGTGCTAACTTTTTCACATCTACCA 552
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 419 GTTTCATGGAGCCTGAGTATGATACTCCCATATTCTGTGCTAACTTCTTCACATCTGCCA 478
Query 553 ACGTTAACATAGTTGTATTGGACCTTAATCCTTTGCATCAGTTGACTGACCAGACGGATT 612
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 ACGTGAACATAGTTGTATTGGACCTTAATCCTTTGCATCAGCTGACTGACCAGACGGATT 538
Query 613 ACCAAGACAAGTATTATAACAAGATAATGTCCATATATCACAAATATGCTGAGACTTTCC 672
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 ACCAAGACAAGTATTATAACAAGATCATGTCCATATATCACAAATATGCTGAGACTTTCC 598
Query 673 CATGGGGAGGGAAATTGACTGGTGAATCCATAAAGTTTTTCTCGCCTTTGGTGATGTGGA 732
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 CATGGGGAGGGAAATTGACTGGTGAATCCATAAAGTTTTTTTCGCCTTTGGTGATGTGGA 658
Query 733 CTAGGTTTTCGTCTAGCAAAGAAAAACATAAGGCTTTGTTCTCTGCGTTTCTAGAGTACT 792
| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 CCAGGTTTTCGTCTAGCCAAGAAAAACATAAGGCTTTGTTCTCTGCGTTTCTCGAGTACT 718
Query 793 ATCAGGCATGGCTTGAGATGACAATCCAAGTGAGGGAGGAGATGGAACCATCTCATGTGA 852
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 ACCAGGCATGGCTTGAGATGACAATCCAAGTGAGGGAGGAGATGGAACCATCTCAGGTGA 778
Query 853 GAGCCAATTGTGAAGCACAACACAAGTACCTGACATGGCGAGCACAAAAGGATCCTGGAC 912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TAGCCAATTGTGAAGCACAACACAAGTACCTGACATGGCGAGCACAAAAGGATCCTGGAC 838
Query 913 ATGGTCTTCTTAAAAGATTAGTAGGTGAAGCAAAGGCAAAGGAGCTGCTAAGGGATTTCC 972
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 ATAGTCTTCTTAAAAGATTAGTTGGTGAAGCAAAGGCAAAGGAGCTGCTAAGGGATTTCC 898
Query 973 TGTTCAATGGGGTGGATGAGTTAGGCACAAAAACATTCATTGATTACTTTCCAGAGTACC 1032
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGTTCAATGGGGTCGATGAGTTAGGCACAAAAACATTCATTGATTACTTTCCAGAGTACC 958
Query 1033 AAACAGAAGATGGAACTGTAAGCGATAAACGAAGTATCATTGGGAAGTCATATGAAACTC 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAACAGAAGATGGAACTGTAAGCGATAAACGAAGTATCATTGGGAAGTCATATGAAACTC 1018
Query 1093 GTCCATGGGATTTAACAGGACAATTTATCGGCTAACAATGA-TATATGTGAACAAGT-CA 1150
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1019 GGCCATGGGATTTAACAGGACAATTTATCAGCTAACAATGAATATATGTGAACAAGTTC- 1077
Query 1151 GATTTCAGAGTCATCAACACAAGAGGACGTGAACTTAGGGAAGTAGGAATAAGAAAGAGC 1210
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1078 GATTTCAGAGTCATCAACACAAGAGGAAGTGAACTTAGGGAAGTAGGAATAAAAAAGAGC 1137
Query 1211 AGCATGA-G-G-AGTCTCTCAGGTCTATCTGCATTTCAAGATGATTGTTTGAGTTACCAT 1267
||||||| | | |||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 1138 AGCATGATGAGGAGTCTCTCAGGTCTATCTCCATCTCAAGATGATTGTTTGACTTACCAT 1197
Query 1268 GCATTGTAGTTT------TA---CAAGTGTAGCTCTCAGCCCTTCATCAAAATGAGAATC 1318
|||||||||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct 1198 GCATTGTAGTTTAACAAGTATTACAAGTGTAACTCTCAGCCCTTCATCAAAAGGAGAATT 1257
Query 1319 CTCGAGTATGATATGATTTTAATGAAAA 1346
||||||||||||||||||||||||||||
Sbjct 1258 CTCGAGTATGATATGATTTTAATGAAAA 1285
> Ahg922096 jgi|Araly1|922096|scaffold_103377.1
Length=384
Score = 183 bits (99), Expect = 2e-45
Identities = 111/117 (95%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 357 CAGGAAAAGTATAGTAGCATGACAGGACTAGATGGTAAGACCGAACTTCAAATGCTTGCT 416
|||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 146 CAGGAAAAGTATAGTACCATGACAGGACTGGATGGGAAGACCGAAATTCAAATGCTTGCT 205
Query 417 TTTAAATCTTCAAAGATTAGACTCTTGAGGAGTATGGCAATAGAGAATGAGACAATG 473
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 206 TTTAAATCTTCAAAGATTAGACTCTTGAGGAGCATGGCCATAGAGAATGAGACAATG 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5