BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09160.1

Length=865
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478232 jgi|Araly1|478232|fgenesh2_kg.3__933__AT3G09160.1          265    5e-70


> Ahg478232 jgi|Araly1|478232|fgenesh2_kg.3__933__AT3G09160.1
Length=459

 Score =  265 bits (143),  Expect = 5e-70
 Identities = 198/223 (89%), Gaps = 9/223 (4%)
 Strand=Plus/Plus

Query  595  CTTCTCTATAGTGTATCTACT-GGGAGAAGACGCAATAGACAAGGCCCCAAAACTTAGTG  653
            ||||||||||||||||||| | |||| |||||||| ||||| |||||||||| |||||||
Sbjct  231  CTTCTCTATAGTGTATCTAGTGGGGA-AAGACGCAGTAGACGAGGCCCCAAAGCTTAGTG  289

Query  654  GGACCGACATGGGAGGGGGGCGCAAAGCAGTTGTTCGGTTTGTTGCTTACCATGGAAGAA  713
            ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  290  GGACCGACATGGGAGGGGGGCACAAAGTAGTTGTTCGGTTTGTTGCTTACCATGGAAGAA  349

Query  714  ACATTTTCCACCCCCGCCGCCAGAAAGGCCGCATCATTTGTGGCCGCCCAGATG-AAAAG  772
             |||| |||||||||||||||| ||||||||||||||| ||||||||||| | | |||||
Sbjct  350  CCATTGTCCACCCCCGCCGCCACAAAGGCCGCATCATTCGTGGCCGCCCA-AGGGAAAAG  408

Query  773  CCAAAGATGGCTGCCATAATGAAGATA-ATTAAGAAGCCAAAG  814
            |  || |||||||  | || ||||| | || ||||||||||||
Sbjct  409  CGGAATATGGCTGAAA-AA-GAAGA-AGAT-AAGAAGCCAAAG  447


 Score =  204 bits (110),  Expect = 1e-51
 Identities = 137/149 (92%), Gaps = 6/149 (4%)
 Strand=Plus/Plus

Query  324  ACTCGCAATTCTTCTCTCTGGA-GTCATGCTTTTATTTATTTTGTGGGAGAAGGCACAGC  382
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct  85   ACTCGCAATTCTTCTCTCTGGAGGT-ATGCTTTTATTTATTTTGTGGGAGAAGGCGCAGC  143

Query  383  AGACAAGGCCTTGCAACTCAATGGAAGTGACATGGGAGGATGGACTGTCGATGCTGAGGC  442
            ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  144  AGACAAGGCGTTACAACTTAATGGAAGTGACATGGGAGGATGGACTGTCGATGCTGAGGC  203

Query  443  CGAT-CCCTTTCC-GAAAGAAGAAGACAA  469
            |  | |||||||| ||| ||||| |||||
Sbjct  204  CT-TGCCCTTTCCTGAA-GAAGACGACAA  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32023250280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5