BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09180.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928581 jgi|Araly1|928581|scaffold_301038.1 2185 0.0
> Ahg928581 jgi|Araly1|928581|scaffold_301038.1
Length=1289
Score = 2185 bits (1183), Expect = 0.0
Identities = 1252/1286 (97%), Gaps = 2/1286 (0%)
Strand=Plus/Plus
Query 101 CGTCGTCGTCAAGAAGATCAATTTCATTGAAATCGAAAGAGTGTGCTTGAATCACAGCTT 160
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1 CGTCGTCGTCAAGAAGATCAATTACATTGAAATCGAAAGAGAGTGCTTGAATCACAGCTT 60
Query 161 ATGCAGACGCTACACCAGTCCCAACTTCTCCAGAATCCGGCCGAGGCGGCGAACAATCAG 220
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 61 ATGCAGACGCTACACCAGTCCCAACTTCTCCATAATTCGGCCGAGGCGGCGAACAATCAG 120
Query 221 TCTGAATCGGACGCGCCGCCGAAACAGGTGGCTCAGGCCATGGAACGACTCAATCAAGCG 280
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGAATCTGACGCGCCGCCGAAACAGGTGGCTCAGGCCATGGAACGACTCAATCAAGCG 180
Query 281 GCTAGGGTTATCGCCGATATCCGCCTCGGCGCTGACCGTATCCTTGAAGCTATGTTCGTG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTAGGGTTATCGCCGATATCCGCCTCGGCGCTGACCGTATCCTTGAAGCTATGTTCGTG 240
Query 341 GCTTCGCAACCTCGTCACACAGACATGCCTCTTCAGCTCTTTCTCAGAGAAGACGCCTCC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTTCGCAACCTCGTCACACAGACATGCCTCTTCAGCTCTTTCTCAGAGAAGACGCCTCC 300
Query 401 ATGCGTCAACATCTTCAGGATCTTCGCTTAATAGGGAAGAAATTGGAAGAATCTGGAGTG 460
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ATGCGTCAACATCTTCAGGATCTTCGCTTAATCGGGAAGAAATTGGAAGAATCTGGAGTG 360
Query 461 TTAACTGAATCACTTAGGTCAAGAAGTAACTCTTGGGGTCTTCACATGCCTTTGGTTTGT 520
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TTAACTGAATCACTTAGGTCAAGAAGTAACTCATGGGGTCTTCACATGCCTTTGGTTTGT 420
Query 521 CCAGATGGTGCAGTCGTTGCTTATGCTTGGAAAAGACAGCTTGCTGGCCAAGCTGGTGCT 580
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCAGATGGTGCTGTCGTTGCTTATGCTTGGAAAAGACAGCTTGCTGGCCAAGCTGGTGCC 480
Query 581 TCTGCTGTTGATAGAACCAGGTTAGCTCTCAAGGCCTTCACGGATCAGAAAAGACGATTC 640
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TCTGCTGTTGACAGAACCAGGTTAGCTCTCAAGGCCTTCACAGATCAGAAAAGACGATTC 540
Query 641 TTCCCTCATATTGATGATGGATTAAAGATGGAACCAAGCTCaaaaaaaCATCGTGCCTCC 700
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCCCTCACATTGATGATGGATTAAAGATGGAACCAAGCTCAAAAAAACATCGTGCCTCC 600
Query 701 CATTTGCTATTAGAAAATGGAAGAGAGGAGCCGGTTGATTACAAAACATTGCCAGATATA 760
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CATTTGCTAATAGAAAATGGAAGAGAGGAGCCGGTTGATTACAAAACATTACCAGATATA 660
Query 761 CAATCGCGTTTAGAGAAGCTGGTTCCGAGTGTGAAGGTGTCTACTTATGGACGATTGAAC 820
||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||
Sbjct 661 CAATCGCGTTTAGAGAAGCTGGTCCCCAATGTGAAGGTCTCTACTTATGGACGATTGAAC 720
Query 821 TGGCTTAAAAGAGCTAACTCTTTACCTGGGTCAGGTAGTGATGATCCTACAGAAGCATCG 880
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TGGCTTAAAAGAGCTAACTCTTTACCTGGGTCAGGTAGTGATGATCCAACAGAAGCATCG 780
Query 881 AAACCTATTTTCCAGAGTTCTAGCAAGCTGAGATCAGGGTTACAGACTGAAGTTGTCGAC 940
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AAACCTATTTTCCAGAGTTCTAGTAAGCTGAGATCAGGGTTACAGACTGAAGTTGTCGAT 840
Query 941 AAGATTGCTGTTATTGAGTTATCATTTCCTTC-TCTATTCAGAGCTATAGTCTCGTTGAG 999
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 841 AAGATTGCTGTTATTGAGTTATCATTTCCTTCAT-TATTCAGAGCTATAGTCTCGTTGAA 899
Query 1000 TCCAGCGGGTTCTGTTGATCCAGATGCAGTTGCTTTCTTCTCCCCAGATGAGGGAGGCAG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCCAGCGGGTTCTGTTGATCCAGATGCAGTTGCTTTCTTCTCCCCAGATGAGGGAGGCAG 959
Query 1060 CTACTTACATGCGAGAGGCTTCTCGGTTTATCATGTTTACAAACACATAACGGAACATGC 1119
||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 960 CTACTTACATGCGCGAGGCTTCTCGGTTTATCACGTTTACAAACACATGACGGAACATGC 1019
Query 1120 TGCTACAGCCTTGCAATATTTCCTCGGCTTTGGTACTGGAACAGCTCTCTACTCTCTTCT 1179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGCTACGGCCTTGCAATATTTCCTCGGCTTTGGTACTGGAACAGCTCTCTACTCTCTTCT 1079
Query 1180 GCTATGGATATGCAGTTTTGAATCCGTATTTAGCAAACCTTGCACTAAATGTGGAAGGCT 1239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 GCTATGGATATGCAGTTTTGAATCCCTATTTAGCAAACCTTGCACTAAATGTGGAAGGCT 1139
Query 1240 ATTAGCAATGGATAAAAAGTCTGCGTTAATCTTACCTCCTTTACACCGCGCTTACCAAGA 1299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1140 ATTAGCAATGGATAAAAAGTCTGCGCTAATCTTACCTCCTTTACACCGCGCTTACCAAGA 1199
Query 1300 ATTGCCTCTTGCATTAAACCTGGACGTTTGTGAAGCTTACCACTCCAGTTGCTCTCAAGA 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTGCCTCTTGCATTAAACCTGGACGTTTGTGAAGCTTACCACTCCAGTTGCTCTCAAGA 1259
Query 1360 TGATACCTAGTACTCTAGTGATTAGG 1385
|||||| |||||||| ||| ||||||
Sbjct 1260 TGATACGTAGTACTCCAGTAATTAGG 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5