BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09190.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737 1463 0.0
Ahg478213 jgi|Araly1|478213|fgenesh2_kg.3__914__AT3G09035.1 976 0.0
Ahg348499 jgi|Araly1|348499|fgenesh1_pg.C_scaffold_5001891 65.8 7e-10
> Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737
Length=942
Score = 1463 bits (792), Expect = 0.0
Identities = 885/930 (95%), Gaps = 6/930 (1%)
Strand=Plus/Plus
Query 111 TTTTGACAAGAGTGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTCGAT 170
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 15 TTTTGACAAGAGTGTTGCTCTGTTTGGAGATTCCAAGCTGGTCAATGACAGTTCTTCGAT 74
Query 171 TCAGCTGACTGACTCAGTGAATCGGACCGAGGGACGAGTCTTTTACAAGAAACCCATCAA 230
|||||||||||||||||||| || || |||||||||||||||||| | |||||||||| |
Sbjct 75 TCAGCTGACTGACTCAGTGAGTCAGAGCGAGGGACGAGTCTTTTATAGGAAACCCATCCA 134
Query 231 TCTATTCCAAGGTAAAGAGAGGAACTCCGTTATTTTCTCGACTTACTTCTCGTTTTCGAT 290
||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 135 TCTATTCAAAGGTAAAGAGAAGAACTCGGTTATTTTCTCGACTTACTTCTCGTTTTCGAT 194
Query 291 GCCCAATGAGATTGGTGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATCTTAG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GCCCAATGAGATTGGTGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATCTTAG 254
Query 351 TCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTAGGGTTTCTATTAGAGTATGCAAA 410
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 255 TCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTCGGGTTTCTACTAGAGTATGCAAA 314
Query 411 GAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAAGAGT 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 315 GAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAAGAAT 374
Query 471 CTTAATTGGTAGACCTGAGTCTGCCAAAATTAGAAACCTTTCGTTTGTGGGTGACTTGAT 530
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 375 CTTAATTGGTAGACCTGAATCTGCTAAAATTAGAAATCTTTCGTTTGTGGGTGACTTGAT 434
Query 531 GATGGATGATGGAGGGATTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGAGAAT 590
|||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GATGAACAATGGAGGGACTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGAGAAT 494
Query 591 GAGGGTTCGTTTCAGAAAACGTGGTTCGATAAAGATGTTTGATCCGTTCTTCTCTTTCTC 650
|| |||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 495 GATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTTGATCCATTCTTCTCTTTCTC 554
Query 651 GGTAGACTTGGAGAAG-CTTTGGAAAGGTGGTGAAGTCATGGTGGGTTTAAGCTCTGCTA 709
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 555 GGTAGACTTGGAGAAGACTT-GGAAAGGTGGTGAAGTCATGGTGGGTTTAAGCTCTGCTA 613
Query 710 ATGGGAACTCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATATGGCATCTTG 769
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 614 ATGGGAACTCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATAAGGCATCTTG 673
Query 770 ATCCGATATGGGTGCAACCAGCGCCATTAGGACCAAATGAAGGTTTGAAGCCGGACGTTT 829
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 674 ATCCGATATGGGTGCAACCAACGCCATTTGGACCGAATGAAGGTTTGAAGCCGGACGTTT 733
Query 830 CCACGGAAATGGAAGAGGGCCGAGAAA-ATAGTGAGTGTATATGGAGAATGCTTGGTGCT 888
|||||||| |||||||||||||||| | | ||||||||||||||||||||||||||| ||
Sbjct 734 CCACGGAAGTGGAAGAGGGCCGAGAGAGA-AGTGAGTGTATATGGAGAATGCTTGGTACT 792
Query 889 CTGGTCTTGGCTGCAGTATGTGGAGCCGTAGGGGCAATGTCAGCTATGTATCTTTGGACT 948
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 793 TTGGTCTTGGGTGCAGTATGTGGAGCCTTAGGGGCAATGTCAGCTATGTATCTTTGGACA 852
Query 949 ATTTGCAGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGCAGTGAGCATTGTG 1008
|| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATATGCGGTGTTAGGAGGTCAATGGCCGTGGTTCCAGAGGAATGTGCAGTGAGCATTGTG 912
Query 1009 GTCGTTGCA-GTTAAAGATGGCAAGAAGTA 1037
||||||| | ||||||||||||||||||||
Sbjct 913 GTCGTTG-ATGTTAAAGATGGCAAGAAGTA 941
> Ahg478213 jgi|Araly1|478213|fgenesh2_kg.3__914__AT3G09035.1
Length=1506
Score = 976 bits (528), Expect = 0.0
Identities = 865/1020 (85%), Gaps = 53/1020 (5%)
Strand=Plus/Plus
Query 1 ATGGCGATATTCAAAACCCTATCTTTTCTGGTCCTTTTATGCTTTGAGATACATGGAAC- 59
||||| || ||||||||| |||||||| || |||| ||||||||| |||||||||||||
Sbjct 226 ATGGCCATGTTCAAAACCTTATCTTTTTTGTTCCTCTTATGCTTTCAGATACATGGAACG 285
Query 60 ----C-GCAGGTGTGGATTTCACGTTTTCATTTGATGAATTCG-TAAAATCTCAGAGTTT 113
| |||| || ||| | |||||||||| ||| || | | | ||||| |||||
Sbjct 286 ATGTCTGCAGCTGAAAATTCCTCGTTTTCATTCAATGGGTTTGCT-ATATCTCCCAGTTT 344
Query 114 TGACAAGAGTGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTCGATTCA 173
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 345 TGACAAGAGTGTTGCTCTGTTTGGGGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCA 404
Query 174 GCTGACTGACTCAGTGAATCGGACCGAGGGACGAGTCTTTTACAAGAAACCCATCAATCT 233
||||||||||||||||| ||| | || ||||||||| ||||||||||||||||||||||
Sbjct 405 GCTGACTGACTCAGTGACTCGAAGCGTTGGACGAGTCGTTTACAAGAAACCCATCAATCT 464
Query 234 ATTCCAAGGTAAAGAGAGGAACTCCGTTAT-TTTCTCGACTTACTTCTCG--TT-TTCGA 289
|||||||||||| ||||||| | || || |||||||||| |||||||| || ||| |
Sbjct 465 TTTCCAAGGTAAACAGAGGAA-TTCGAGATCTTTCTCGACTCACTTCTCGTTTTCTTCCA 523
Query 290 TGCCCAATGAGATTGGTGAT-GT--CTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATC 346
|| ||| ||||||| ||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 524 TGTCCAGTGAGATTAGTGATGGTGCCTTGGCTTTTGTAATGGTTCCAACTAGTTTGGATC 583
Query 347 TTAGTCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTAGGGTTTCTATTAGAGTATG 406
|||||||||||||||| || || |||||||||||||||||||||| |||| | | ||||
Sbjct 584 TTAGTCTGTTTGGTAACAAGGACAACAGTTCCTCTGCTTTAGGGTTCCTATCACAATATG 643
Query 407 CAAAGAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAA 466
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 644 CAAAGAACGAGACAGTTTTTGCTGTTGAGTTTGATATCTCCAAGAGAGGAAACTGTGCAA 703
Query 467 GAGTCTTAATTGGTAGACCTGAGTCTGCCAAAATTAGAAACCTTTCGTTTGTGGGTGACT 526
|| ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 704 GAATCTTAATTGGTAGACCTGAATCTGCCCAAATTAGAAACCTTTCCTTTGTGGGTGACT 763
Query 527 TGATGATGGATGATGGAGGGATTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGA 586
|||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 764 TGATGATGGACAATGGAGGGACTTTGAACTGTATGATTGAGTATGAGGCAAGTTCTAAGA 823
Query 587 GAATGAGGGTTCGTTTCAGAAAACGTGGTTCGATAAAGATGTTTGATCCGTTCTTCTCTT 646
|||||| |||||| |||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct 824 GAATGATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTGGATCCATTCTTCTCTT 883
Query 647 TCTCGGTAGACTTGGAGAAGCTT-TGGAAAGGTGGTGAAGTCA-TGGTGGGTTTAAGCTC 704
|||| |||||||||| ||| || ||||||||||||||||||| | ||||||||||||||
Sbjct 884 TCTCAGTAGACTTGGCCAAG-TTATGGAAAGGTGGTGAAGTCACT-GTGGGTTTAAGCTC 941
Query 705 TGCTAATGGGAA--C-TCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATATG 761
||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 942 TGCCAATGGGAACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGCTTTGAAATAAG 1001
Query 762 GCATCTTGATCCGATATGGGTGCAACCAGCGCCA-TTAGGACCAAATGAAGGTTTGAAGC 820
||||| | |||||| ||| |||| ||| ||| || | ||| ||||||| | | ||
Sbjct 1002 GCATCCTCCTCCGATGTGGATGCATTCAGAGCCGCTT-GAACCGAATGAAG-TCTCAA-- 1057
Query 821 CGGACGTTTCCACGGAAATGGAAGAGGGCCGAGAAA-ATAGTGAGTGTATATGGA-GAAT 878
| | | | |||||| || |||| | | |||||||||||||||| || |
Sbjct 1058 ---A-G-------G-A---GGAAGATGGTCGAGGTACA-AGTGAGTGTATATGGAAGA-T 1100
Query 879 GCTTGGTGCTCTGGTCTT-GGCTGCAG-TATGTGGAGCCGTAGGGGCAATG-TCAGCTAT 935
|||||||||| |||| || || ||||| | ||||||||| ||||| ||||| | ||| |
Sbjct 1101 GCTTGGTGCTTTGGTTTTTGG-TGCAGCT-TGTGGAGCCTTAGGGACAATGCTT-GCTTT 1157
Query 936 GTATCTTTGGACTATTTGCAGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 995
|||| | ||||| || ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1158 GTATATCTGGACGATATGCCGTGTTAGGCGGTCAATGGCCGTGGTTCCTGAGGAATGTGC 1217
> Ahg348499 jgi|Araly1|348499|fgenesh1_pg.C_scaffold_5001891
Length=1311
Score = 65.8 bits (35), Expect = 7e-10
Identities = 57/67 (85%), Gaps = 4/67 (6%)
Strand=Plus/Plus
Query 163 TCTTCGATTCAGCTGACTGACTCAGTGAATC--GGACCGAGGGACGAGTCTTTTACAAGA 220
|||||||||||||||||||||||||||| || || | ||| |||||| | |||||||
Sbjct 184 TCTTCGATTCAGCTGACTGACTCAGTGAGTCACGGTG-GTGGG-CGAGTCATCTACAAGA 241
Query 221 AACCCAT 227
|||||||
Sbjct 242 AACCCAT 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5