BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09210.1
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928584 jgi|Araly1|928584|scaffold_301041.1 1664 0.0
> Ahg928584 jgi|Araly1|928584|scaffold_301041.1
Length=1056
Score = 1664 bits (901), Expect = 0.0
Identities = 1001/1047 (96%), Gaps = 15/1047 (1%)
Strand=Plus/Plus
Query 8 TTTTCCCAAAAGAAAAACAGAGAATGATGAAGCTGCAAGGGGGACTTCTCCAGTGGAGTC 67
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTTTCCCAAAA-TAAAACAGAGAATGATGAAGCTGCAAGGGGGACTTCTCCAATGGAGTC 59
Query 68 GTAGCAGCTTAATCCCGTCGATTTA-TACGCCAATCAACAAAACCCAATTCTCTATCGCC 126
||||||||||||||||||||||||| | | |||||||||||||| |||||||||||| ||
Sbjct 60 GTAGCAGCTTAATCCCGTCGATTTACT-CACCAATCAACAAAACTCAATTCTCTATCTCC 118
Query 127 GCCTGTGTCATCGAGCGGAACCACCAGCTTACGGCGAAGGAGAGACGGCAGCTCCGGAAC 186
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GCCTGTGTTATCGAGCGGAACCACCAGCTTACGGCGAAGGAGAGACGGCAGCTCCGGAAC 178
Query 187 GAGCGGCGGGAGAGTAAATTGGGGTATAGCTGGCGAGAAGAAGTTGAAGAAAAGTTGATT 246
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGCGGCGGGAGAGTAAATCGGGGTATAGCTGGCGAGAAGAAGTTGAAGAAAAGTTGATT 238
Query 247 AAGAAACCaaaaaaaCGGTATGCAACGTGGACGGAGGAGCTGAATTTGGATACTTTGGCT 306
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGAAACCAAAGAAACGGTATGCGACGTGGACGGAGGAGCTGAATTTGGATACTTTGGCT 298
Query 307 GAGTCGGGTCCGCAATGGTGGGCGGTTAGGGTTTCGAGACTTCGTGGTCATGAGACTGCT 366
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 GAGTCCGGTCCGCAATGGTGGGTGGTTAGGGTTTCGAGACTTCGTGGTCATGAGACTGCT 358
Query 367 CAAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGGTTTATGCA 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGGTTTATGCT 418
Query 427 CCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCA 478
Query 487 GTGTTCCCTGGTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGTTCCCTGGTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATA 538
Query 547 AGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACCAAGAGACAG 606
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGAGAAGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACCAAGAGACAG 598
Query 607 ATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGCTATTTTCAAACAAGCAAAA 666
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTAATAAACCAAGACCTGTAGACGACAGTGACTTGGAAGCTATTTTCAAACAAGCAAAA 658
Query 667 GAAGCGCAAGAGAAAGCAGATAGTGAGTTCGAAGAGGCAGATAGAGCTGAAGAAGAAG-- 724
|||||||||||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 659 GAAGCGCAAGAGAAAGCAGACAGTGAGTTCGAAGAGGCACAAAGTGCTGAAGAAGAAGAA 718
Query 725 -CGAGTATACTAGCGTCACAGGAACTTCTCGCATTATCTAATTCAGATGTTATTGAGACT 783
||||| |||||| |||||| |||||||||||| |||||||||||| ||||||||| ||
Sbjct 719 GCGAGTTTACTAGTATCACAGCAACTTCTCGCATCATCTAATTCAGACGTTATTGAGTCT 778
Query 784 GTAGCAGAATCTAAACCGAAACGAGCCCCGAGAAAAGCTACACTTGCTACTGAAACAAA- 842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTAGCAGAATCTAAACCGAAACGAGCCCCGAGAAAAGCTACACTTGCTACTGAAACAAAA 838
Query 843 G-------G-CGAAGAAGAAGAAACTTGCAGCGGGTTCTACAGTTAGAGTTTTATCAGGG 894
| | ||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 839 GATTCAAAGGCGAAGAAGAAGAAACTTGCAGCGGGTTCTACAGTTCGAGTGTTATCAGGG 898
Query 895 ACATTTGCTGAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAGGCAACG 954
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACATTCGCTGAATTTGTCGGCAACCTAAAGAAACTAAACCGCAAAACTGCAAAGGCAACG 958
Query 955 GTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTT 1018
Query 1015 CCTGAGATTCAATCTTAAATAGTTTGT 1041
|||||||||||||||||||||||||||
Sbjct 1019 CCTGAGATTCAATCTTAAATAGTTTGT 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43841354550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5