BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09220.1 Length=1964 Score E Sequences producing significant alignments: (Bits) Value Ahg478237 jgi|Araly1|478237|fgenesh2_kg.3__938__AT3G09220.1 2905 0.0 > Ahg478237 jgi|Araly1|478237|fgenesh2_kg.3__938__AT3G09220.1 Length=1966 Score = 2905 bits (1573), Expect = 0.0 Identities = 1844/1973 (93%), Gaps = 26/1973 (1%) Strand=Plus/Plus Query 1 GCTTCAATATCTCCATAACACGTTtctctctttctctgctagctct--ctcatc--cttc 56 ||||||||||||||||||||||||||||||||||||| |||||||| |||||| || Sbjct 1 GCTTCAATATCTCCATAACACGTTTCTCTCTTTCTCTACTAGCTCTCCCTCATCTTTTTT 60 Query 57 tctctATAGATGGAGGGAGTTAGGGTTCCTATTGCTTGCGCTCTAATTCTTCTCGCAATC 116 |||||| |||||||||| ||||||||| || |||||||||||||| ||||| ||||| || Sbjct 61 TCTCTAGAGATGGAGGGTGTTAGGGTTTCTCTTGCTTGCGCTCTATTTCTTTTCGCAGTC 120 Query 117 TCTTCCATAACTTCTGCCTCCATTGTGGAACACACCTTCAACGTACAAAACTTAACGGTG 176 ||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||| || Sbjct 121 TCTTCGATAGCTTCTGCCGCCATTGTCGAACACACCTTCAACGTACAAAACTTAACGCTG 180 Query 177 TCTAGGCTGTGCAAACGGCAAGTGATAACGGTCGTTAACGGAAGCCTGCCTGGACCAACA 236 ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| Sbjct 181 TCTAGGCTGTGCAAACGGCAATTGATAACGGTAGTTAACGGAAGCCTACCTGGACCAACA 240 Query 237 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTTCTAAACCATTCCCCTCACAAC 296 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 241 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTCCTAAACAATTCCCCTCACAAC 300 Query 297 ATCACAATTCATTGGCATGGGATCTTCCATAAACTAACGGTTTGGGCAGATGGACCGAGT 356 ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct 301 ATCACAATTCATTGGCACGGGATCTTCCATAGACTAACAGTTTGGGCAGATGGACCGAGT 360 Query 357 ATGATAACGCAGTGCCCAATCCAGCCTGGCCAAAGATACGCTTACAGATTCAACATCACC 416 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 361 ATGATAACGCAGTGCCCAATACAGCCTGGCCATAGATACGCTTACAGATTCAACATCACC 420 Query 417 GGCCAAGAAGGCACCTTGTGGTGGCATGCACACGCGTCTTTCCTACGCGCCACCGTATAC 476 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 421 GGCCAAGAAGGCACCTTGTGGTGGCACGCTCACGCGTCTTTCCTACGCGCCACCGTATAC 480 Query 477 GGTGCTCTCGTCATCCGCCCTAAATCTGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 536 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 GGTGCTCTTGTCATCCGACCTAAATCCGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 540 Query 537 GAAGTTCCCATCTTATTTGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 596 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAAGTTCCCATCTTATTCGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 600 Query 597 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCGTCCC 656 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 601 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCTTCCC 660 Query 657 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGCCTAAACGTGGTGAAAGGAAAG 716 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| Sbjct 661 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGTCTAGACGTGGTGAAAGGGAAG 720 Query 717 AGATACTTACTTCGCATCATAAACGCGGCCATGAACATCCAACTGTTTTTCAAGATAGCC 776 ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| Sbjct 721 AGATACTTACTTCGCATCATAAACGCGGCGATGAACATTCAAATGTTTTTCAAGATAGCC 780 Query 777 AATCACAGACTGACAGTTGTAGCCGCCGACGCAGTCTACACCGCACCTTACGTCACCGAC 836 |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 781 AATCACAGACTGACAGTTGTTGCCGCTGACGCAGTCTACACCGCACCTTATGTCACCGAC 840 Query 837 GTCATTGTCATCGCACCGGGCCAAACCATCGACGCCCTTCTCTTCGCCGATCAGTCCGTC 896 ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || Sbjct 841 GTCATCGTCATCGCACCTGGCCAAACCATTGACGCTCTTCTCTTCGCCGATCAGTCCATC 900 Query 897 GATACCTCCTACTACATGGCAGCTCACCCTTACGCCAGCGCTCCC-GCCGTCCCTTTCCC 955 || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 901 GACACGTCCTACTACATGGCTGCTCATCCTTACGCCAGCGCTCCGAGC-GTCCCTTTCCC 959 Query 956 AAACACCACCACCAGAGGCGTCATTCACTATGGCGGCGCGTCGAAAACAGGGCGATCAAA 1015 |||||||||||| ||||||||||| ||||| || ||||||||||||||| |||||||||| Sbjct 960 AAACACCACCACTAGAGGCGTCATCCACTACGGTGGCGCGTCGAAAACACGGCGATCAAA 1019 Query 1016 GCCCGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCTTACAGATTCTA 1075 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1020 GCCGGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCCCACAGATTCTA 1079 Query 1076 CTCCAACCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCTACGTGGA 1135 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1080 CTCCAATCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCCACGTGGA 1139 Query 1136 CGAAGAGATGCTCGTAACCATCGGTCTTGGGCTAGAGGCATGCGCAGATAACACCACGTG 1195 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1140 CGAAGAGATGCTCGTAACCATCGGGCTTGGACTAGAGGCATGCGCAGATAACACCACGTG 1199 Query 1196 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1259 Query 1256 CTTGGAAGCAGTGTTTCACGACGTTAAAGGGATTTTCACCGCGGATTTTCCAGACCAGCC 1315 |||||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||| Sbjct 1260 TTTGGAAGCGGTGTTTCACGGCGTTAATGGGATTTTCACAGCGGATTTTCCAGACCAGCC 1319 Query 1316 TCCGGTTAAGTTTGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1375 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TCCGGTTAAGTTCGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1379 Query 1376 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAA-TACGACGGTGGAGGTAGTGT 1434 ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| Sbjct 1380 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAACT-CGACGGTGGAGGTGGTGT 1438 Query 1435 TACAGAACCATGCGCTTATAGCGGCGGAGAGTCATCCCATGCATCTACATGGATTTAATT 1494 | ||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 1439 TGCAGAACCATGCGCTTATTGCGGCGGAGAGTCATCCCATGCACCTCCATGGATTCAATT 1498 Query 1495 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGGAGCAAGTTAA 1554 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1499 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGCAGCAAGTTAA 1558 Query 1555 ATCTCGTTGACCCGCAATCCCGTAACACTTTGGCTGTCCCTGTTGGTGGATGGGCTGTGA 1614 |||| ||| ||||||||| ||||||||| |||||||| ||||||||||||||||| |||| Sbjct 1559 ATCTTGTTAACCCGCAATTCCGTAACACATTGGCTGTGCCTGTTGGTGGATGGGCCGTGA 1618 Query 1615 TCCGTTTCACTGCTAATAATCCAGGTGCGTGGATTTTTCATTGTCATATCGATGTTCACT 1674 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1619 CCCGTTTCACAGCTAATAATCCAGGTGCGTGGATTTTCCATTGTCATATCGATGTTCACT 1678 Query 1675 TACCATTCGGACTAGGGATGATATTTGTGGTTAAGAACGGACCGACCAAGTCGACCACCT 1734 |||||||||||||||||||| || |||||||| ||||||| ||||| ||||| |||||| Sbjct 1679 TACCATTCGGACTAGGGATGGTACTTGTGGTTGAGAACGGCCCGACGAAGTCTTCCACCT 1738 Query 1735 TGCCACCGCCACCACCAGATCTTCCCAAATGTTAAGCAAGATaaaaaaaaCATATTTCAT 1794 |||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||| | Sbjct 1739 TGCCACCGCCACCACCGGATCTTCCCAAATGTTAGGCAAGATACAAAAAGG-T-TTTCTT 1796 Query 1795 CGAAAACAATAAAAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTC---TC-- 1849 ||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1797 -GAAAACAATAAGAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTCAAATTAA 1855 Query 1850 -TGTCTCACA-TTTGTTTTGATGTAGTCGGTA--AA-GAAATTGTATTGTAGTCCATTCA 1904 ||||||| | ||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 1856 GTGTCTCAAAATTTGTTTTGATGTAGTCTGTATTAATGAAATTGTATTGTAGTCCATTCA 1915 Query 1905 TATGTTGTTACCAAT-T--GTGTGTGCTGTGAGTAATTTATATGATTTATTAT 1954 |||||| | |||||| | ||||||| |||||||||||||||||||||||||| Sbjct 1916 TATGTT-T-ACCAATATTTGTGTGTGTTGTGAGTAATTTATATGATTTATTAT 1966 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73818894810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5