BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09220.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478237 jgi|Araly1|478237|fgenesh2_kg.3__938__AT3G09220.1 2905 0.0
> Ahg478237 jgi|Araly1|478237|fgenesh2_kg.3__938__AT3G09220.1
Length=1966
Score = 2905 bits (1573), Expect = 0.0
Identities = 1844/1973 (93%), Gaps = 26/1973 (1%)
Strand=Plus/Plus
Query 1 GCTTCAATATCTCCATAACACGTTtctctctttctctgctagctct--ctcatc--cttc 56
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1 GCTTCAATATCTCCATAACACGTTTCTCTCTTTCTCTACTAGCTCTCCCTCATCTTTTTT 60
Query 57 tctctATAGATGGAGGGAGTTAGGGTTCCTATTGCTTGCGCTCTAATTCTTCTCGCAATC 116
|||||| |||||||||| ||||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 61 TCTCTAGAGATGGAGGGTGTTAGGGTTTCTCTTGCTTGCGCTCTATTTCTTTTCGCAGTC 120
Query 117 TCTTCCATAACTTCTGCCTCCATTGTGGAACACACCTTCAACGTACAAAACTTAACGGTG 176
||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 121 TCTTCGATAGCTTCTGCCGCCATTGTCGAACACACCTTCAACGTACAAAACTTAACGCTG 180
Query 177 TCTAGGCTGTGCAAACGGCAAGTGATAACGGTCGTTAACGGAAGCCTGCCTGGACCAACA 236
||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 181 TCTAGGCTGTGCAAACGGCAATTGATAACGGTAGTTAACGGAAGCCTACCTGGACCAACA 240
Query 237 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTTCTAAACCATTCCCCTCACAAC 296
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 241 ATACGCGTCAAGGAGGGTGACTCGCTCGTTATTCACGTCCTAAACAATTCCCCTCACAAC 300
Query 297 ATCACAATTCATTGGCATGGGATCTTCCATAAACTAACGGTTTGGGCAGATGGACCGAGT 356
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct 301 ATCACAATTCATTGGCACGGGATCTTCCATAGACTAACAGTTTGGGCAGATGGACCGAGT 360
Query 357 ATGATAACGCAGTGCCCAATCCAGCCTGGCCAAAGATACGCTTACAGATTCAACATCACC 416
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ATGATAACGCAGTGCCCAATACAGCCTGGCCATAGATACGCTTACAGATTCAACATCACC 420
Query 417 GGCCAAGAAGGCACCTTGTGGTGGCATGCACACGCGTCTTTCCTACGCGCCACCGTATAC 476
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 GGCCAAGAAGGCACCTTGTGGTGGCACGCTCACGCGTCTTTCCTACGCGCCACCGTATAC 480
Query 477 GGTGCTCTCGTCATCCGCCCTAAATCTGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 536
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GGTGCTCTTGTCATCCGACCTAAATCCGGTCACTCTTACCCGTTTCCCAAACCTCACAAA 540
Query 537 GAAGTTCCCATCTTATTTGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 596
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGTTCCCATCTTATTCGGTGAATGGTGGAACACCGATGTAGTCGCGTTAGAGGAGGCA 600
Query 597 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCGTCCC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 GCAATCGCCACCGGAGTTCCTCCAAACAATTCCGACGCTTATACGATCAATGGCCTTCCC 660
Query 657 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGCCTAAACGTGGTGAAAGGAAAG 716
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 661 GGAAACCTATATCCATGCTCCAAAGACAGAATGTTTAGTCTAGACGTGGTGAAAGGGAAG 720
Query 717 AGATACTTACTTCGCATCATAAACGCGGCCATGAACATCCAACTGTTTTTCAAGATAGCC 776
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 721 AGATACTTACTTCGCATCATAAACGCGGCGATGAACATTCAAATGTTTTTCAAGATAGCC 780
Query 777 AATCACAGACTGACAGTTGTAGCCGCCGACGCAGTCTACACCGCACCTTACGTCACCGAC 836
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 781 AATCACAGACTGACAGTTGTTGCCGCTGACGCAGTCTACACCGCACCTTATGTCACCGAC 840
Query 837 GTCATTGTCATCGCACCGGGCCAAACCATCGACGCCCTTCTCTTCGCCGATCAGTCCGTC 896
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 841 GTCATCGTCATCGCACCTGGCCAAACCATTGACGCTCTTCTCTTCGCCGATCAGTCCATC 900
Query 897 GATACCTCCTACTACATGGCAGCTCACCCTTACGCCAGCGCTCCC-GCCGTCCCTTTCCC 955
|| || |||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 901 GACACGTCCTACTACATGGCTGCTCATCCTTACGCCAGCGCTCCGAGC-GTCCCTTTCCC 959
Query 956 AAACACCACCACCAGAGGCGTCATTCACTATGGCGGCGCGTCGAAAACAGGGCGATCAAA 1015
|||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||||||
Sbjct 960 AAACACCACCACTAGAGGCGTCATCCACTACGGTGGCGCGTCGAAAACACGGCGATCAAA 1019
Query 1016 GCCCGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCTTACAGATTCTA 1075
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GCCGGTGTTGATGCCGAAACTACCTTCCTTCTTCGACACGTTAACGGCCCACAGATTCTA 1079
Query 1076 CTCCAACCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCTACGTGGA 1135
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 CTCCAATCTCACTGCCTTAGTCAATGGACCTCACTGGGTTCCAGTTCCACGCCACGTGGA 1139
Query 1136 CGAAGAGATGCTCGTAACCATCGGTCTTGGGCTAGAGGCATGCGCAGATAACACCACGTG 1195
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1140 CGAAGAGATGCTCGTAACCATCGGGCTTGGACTAGAGGCATGCGCAGATAACACCACGTG 1199
Query 1196 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCCAAAATTCTCAGCTTCTATGAGCAATCACTCTTTCGTGTTACCCAAGAAGCTATCGAT 1259
Query 1256 CTTGGAAGCAGTGTTTCACGACGTTAAAGGGATTTTCACCGCGGATTTTCCAGACCAGCC 1315
|||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 1260 TTTGGAAGCGGTGTTTCACGGCGTTAATGGGATTTTCACAGCGGATTTTCCAGACCAGCC 1319
Query 1316 TCCGGTTAAGTTTGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1375
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCCGGTTAAGTTCGATTACACGAACCCGAACGTAACCCAAACAAACCCGGGACTTTTGTT 1379
Query 1376 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAA-TACGACGGTGGAGGTAGTGT 1434
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 1380 CACTCAAAAATCAACTAGCGCCAAGATTTTGAAATTCAACT-CGACGGTGGAGGTGGTGT 1438
Query 1435 TACAGAACCATGCGCTTATAGCGGCGGAGAGTCATCCCATGCATCTACATGGATTTAATT 1494
| ||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 1439 TGCAGAACCATGCGCTTATTGCGGCGGAGAGTCATCCCATGCACCTCCATGGATTCAATT 1498
Query 1495 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGGAGCAAGTTAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 TCCATGTATTGGCTCAAGGGTTTGGTAATTATGACCCGAGCCGTGACCGCAGCAAGTTAA 1558
Query 1555 ATCTCGTTGACCCGCAATCCCGTAACACTTTGGCTGTCCCTGTTGGTGGATGGGCTGTGA 1614
|||| ||| ||||||||| ||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1559 ATCTTGTTAACCCGCAATTCCGTAACACATTGGCTGTGCCTGTTGGTGGATGGGCCGTGA 1618
Query 1615 TCCGTTTCACTGCTAATAATCCAGGTGCGTGGATTTTTCATTGTCATATCGATGTTCACT 1674
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1619 CCCGTTTCACAGCTAATAATCCAGGTGCGTGGATTTTCCATTGTCATATCGATGTTCACT 1678
Query 1675 TACCATTCGGACTAGGGATGATATTTGTGGTTAAGAACGGACCGACCAAGTCGACCACCT 1734
|||||||||||||||||||| || |||||||| ||||||| ||||| ||||| ||||||
Sbjct 1679 TACCATTCGGACTAGGGATGGTACTTGTGGTTGAGAACGGCCCGACGAAGTCTTCCACCT 1738
Query 1735 TGCCACCGCCACCACCAGATCTTCCCAAATGTTAAGCAAGATaaaaaaaaCATATTTCAT 1794
|||||||||||||||| ||||||||||||||||| |||||||| ||||| | |||| |
Sbjct 1739 TGCCACCGCCACCACCGGATCTTCCCAAATGTTAGGCAAGATACAAAAAGG-T-TTTCTT 1796
Query 1795 CGAAAACAATAAAAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTC---TC-- 1849
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1797 -GAAAACAATAAGAAGAAGATTATTTAGAGCAAAGAAGACAAAAATTTGTCTCAAATTAA 1855
Query 1850 -TGTCTCACA-TTTGTTTTGATGTAGTCGGTA--AA-GAAATTGTATTGTAGTCCATTCA 1904
||||||| | ||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1856 GTGTCTCAAAATTTGTTTTGATGTAGTCTGTATTAATGAAATTGTATTGTAGTCCATTCA 1915
Query 1905 TATGTTGTTACCAAT-T--GTGTGTGCTGTGAGTAATTTATATGATTTATTAT 1954
|||||| | |||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1916 TATGTT-T-ACCAATATTTGTGTGTGTTGTGAGTAATTTATATGATTTATTAT 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5