BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09230.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928586 jgi|Araly1|928586|scaffold_301043.1 1677 0.0
> Ahg928586 jgi|Araly1|928586|scaffold_301043.1
Length=1207
Score = 1677 bits (908), Expect = 0.0
Identities = 1134/1237 (92%), Gaps = 39/1237 (3%)
Strand=Plus/Plus
Query 37 gagagagagagagagaAGGGAAGCTTATGGAGGCAGAGATCGTGAGACGATCGGAGGTAA 96
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1 GAGAGAGAGAGAGAGAAGGGAAGCTTATGGATGCAGAGATCGTGAGACGATCGGAGACAA 60
Query 97 CGGGATTAAGAAGGGAGGTGGAAGAATCGTC--A-AT-T---G-G-TAGAGGAGATTGCG 147
||||||||| ||||||| ||||||||||| | | | | | | |||||||||||||
Sbjct 61 CGGGATTAATAAGGGAGCTGGAAGAATCGGCGGAGGTGTCAGGCGACAGAGGAGATTGCG 120
Query 148 ATGGTGATGGCGGCGATGTGGGAGAAGATGCGGCAGGGTTCGTTGGGACGAGCGGGAGAG 207
||||||||||||||||||| || | ||| | ||||||||||||||||
Sbjct 121 ATGGTGATGGCGGCGATGT-GG-G-AGA------A---------GGGACGAGCGGGAGAG 162
Query 208 GAAGAAGAGATCGAGTTAAAGGGCCGTGGTCGAAGGAGGAGGATGATGTGTTGAGTGAGC 267
|| ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 163 GAGGAAGAGAGCGAGTTAAGGGGCCGTGGTCGCCGGAGGAGGATGGTGTGTTGAGTGAGC 222
Query 268 TCGTTAAGAGGTTGGGAGCGAGGAATTGGAGTTTTATCGCTCGGAGTATTCCTGGTCGTT 327
||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 223 TCGTTAAGAAGTTTGGAGCGAGGAATTGGAGTTTGATCGCTCGGAGTATTCCTGGTCGTT 282
Query 328 CAGGCAAGTCTTGTCGTCTTCGTTGGTGTAATCAGCTCAATCCAAATCTTATACGCAATT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CAGGCAAGTCTTGTCGTCTTCGTTGGTGTAATCAGCTCAATCCAAATCTTATACGCAATT 342
Query 388 CATTTACTGAGGTAGAGGATCAGGCTATCATCGCAGCACATGCCATCCACGGAAACAAAT 447
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 343 CCTTTACTGAGGTAGAGGATCAGGCTATCATCGCAGCACATGCCACCCACGGAAACAAAT 402
Query 448 GGGCTGTTATCGCGAAGCTCCTCCCCGGAAGAACAGATAATGCTATCAAGAACCACTGGA 507
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 403 GGGCTGCAATCGCGAAGCTCCTCCCGGGAAGAACAGATAATGCTATCAAGAACCACTGGA 462
Query 508 ACTCTGCTTTAAGACGTCGATTCATAGACTTTGAAAAGGCCAAGAATATAGGAACTGGAA 567
|||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 463 ACTCCACTTTAAGACGTCGATTCATGGACTTTGAAAAGGCGAAGAATACAGGAACTGGAA 522
Query 568 GCTTGGTCGTGGATGATTCTGGATTTGACAGAACGACAACAGTAGCCTCATCAGAAGAAA 627
|||| ||| |||| |||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 523 GCTTAGTCATGGAAGATTCTGGATTTAACAGAACGACTACAATAGCCTCATCAGAAGAAA 582
Query 628 CTTTATCTTCAGGCGGTGGTTGCCATGTAACTACTCCAATTGTATCTCCAGAAGGCAAAG 687
|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 583 CTTTATCTTCAGGCGGTGGTGGCCATGTAACTACTCCAATTGTTTCTTCAGAAGGCAAAG 642
Query 688 AAGCTACCACCTCCATGGAAATGTCTGAAGAACAATGCGTAGAGAAAACAAACGGAGAAG 747
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 643 AAGCTACC---TCCATGGAAATGTCTGAAGAACAATGCGTAGAGAAAACAATCGAAGAAG 699
Query 748 GTATTTCTAGGCAAGATGATAAGGATCCTCCAACGCTTTTCCGCCCAGTGCCTCGGCTCA 807
|||||||||||||||| | ||| |||||||||||||||| |||||||||| ||| |||||
Sbjct 700 GTATTTCTAGGCAAGACGGTAATGATCCTCCAACGCTTTCCCGCCCAGTGGCTCAGCTCA 759
Query 808 GTTCTTTTAATGCTTGCAATCACATGGAAGGATCACCCTCTCCACATATACAAGACCAAA 867
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 760 GTTCTTTTAATGCTTGCAATCACATGGAAGGATTATCTTCTCCACATATACAAGACCAAA 819
Query 868 ATCAGCTCCAATCATCTAAACAAGACGCAGCAATGCTAAGATTGCTTGAAGGAGCTTACA 927
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 820 ATCGGCTCCAATCATCTAAACAAGACGCAGCAATGCTAAGACTGCTTGAAGGAGCTTACA 879
Query 928 GCGAACGGTTTGTGCCTCAAACATGTGGAGGTGGTTGTTGCAGCAACAATCCCGATGGCA 987
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 880 GTGAACGGTGTGTGCCTCAAACATGTGGAGGTGGTTGTTGCAGCAACAATCCCG-T---- 934
Query 988 GTTTTCAGCAAGAATCATTGTTGGGTCCAGAGTTTGTGGATTACTTAGACTCACCAACGT 1047
| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 935 -T---CAGCAAGACTCATTGTTGGGTCCAGAGTTTGTGGATTACTTAGACCCACCAACGT 990
Query 1048 TTCCGAGTTCCGAACTAGCTGCTATAGCAACGGAAATAGGCAGCCTCGCTTGGCTGAGAA 1107
||||||||| |||| |||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct 991 TTCCGAGTTGCGAATTAGCTGCTATAGTAACGGATATAAGCAGCCTCGCTTGGCTGAGAA 1050
Query 1108 GCGGTTTAGAGAGTAGCAGCGTGAGGGTGATGGAAGACGCAGTTGGTCGGTTAAGGCCTC 1167
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1051 GCGGTTTAGAGAGTAGCAGCGTGAGGGTGATGGAAGAAGCAGCTGGTCGGTTAAGGCCTC 1110
Query 1168 AAGGCTCCAGGGGTCATCGAGATCATTATCTTGTATCTGAACAGGGGACGAACATAACCA 1227
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1111 AAGGCTCAAGGGGTCATCGAGATCATTATCTTGTATCTGAACGGGGGAAGAACATAACCA 1170
Query 1228 ATGTCCTGTCCACATAAAAACTGGGAGAACAAAAACA 1264
|||||||||||||||||||||||| ||||||||||||
Sbjct 1171 ATGTCCTGTCCACATAAAAACTGGCAGAACAAAAACA 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5