BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09240.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317726 jgi|Araly1|317726|fgenesh1_pm.C_scaffold_3000742 2276 0.0
Ahg486973 jgi|Araly1|486973|fgenesh2_kg.6__107__AT5G01060.1 1123 0.0
Ahg333388 jgi|Araly1|333388|fgenesh1_pm.C_scaffold_710000001 1114 0.0
> Ahg317726 jgi|Araly1|317726|fgenesh1_pm.C_scaffold_3000742
Length=1521
Score = 2276 bits (1232), Expect = 0.0
Identities = 1344/1399 (96%), Gaps = 4/1399 (0%)
Strand=Plus/Plus
Query 38 ATAATAAAGAAGAAGATGAAGGAAGTACTTGTCCTAATTTCCTGGAGTTCAGCTTGGAAC 97
|||| || |||||||||||||||||||||||||| | ||||| ||| |||||||||||||
Sbjct 125 ATAACAACGAAGAAGATGAAGGAAGTACTTGTCCGATTTTCCGGGAATTCAGCTTGGAAC 184
Query 98 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGACAACATCGTGTCGGAGCACAACGAGA 157
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 185 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGGCAACATCGTGTCGGAGCACAACGAGA 244
Query 158 GGGTTCCTAACATCGTCTACAAAGGCCAGCTCAACGACGGAAGAAAGATCGCCGTCAAGC 217
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 245 GGGTTCCTAACATCGTCTACAAAGGGAAGCTCAAAGACGGAAGAAAGATCGCCGTCAAAC 304
Query 218 GGTTTCAACGGCTTTCATGGCCTGATTCTTTAGAATTCATCGAGGAAGCACAAGCTGTAG 277
|||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||| |
Sbjct 305 GGTTTCAAAGGCTTTCATGGCCTGATTCTTTCGAATTCACCGAAGAAGCACAAGCTGTTG 364
Query 278 GGAGATGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 337
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GGAGGTGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 424
Query 338 GGTTGCTTGTTGCTGAGTACATGCCTAATGAAACACTTGCTAAGCATCTCTTTCACTGGG 397
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 425 GGTTGCTCGTTGCTGAGTACATGCCTAATGGAACACTTGCTAAGCATCTCTTTCACTGGG 484
Query 398 AGAAAAGACCAATGAAGTGGGAAATGAGGTTGAGAGTTGCGTTACATACTGCAACAGCCT 457
|||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct 485 AGAAAAGACCAATGAAATGGGAAATGAGATTAAGGGTTGCGTTACATACTGCAACAGCCT 544
Query 458 TGGAGTACTGTAATGAT-TGGGGAATAGATTTGTATCACGATCTTAACACCTACAGAATA 516
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGGAGTACTGTAATGATAT-GGGAATAGATTTGTATCACGATCTTAACACCTACAGAATA 603
Query 517 TTGTTTGACAAGGTTGGGAATCCTAGGCTGTCTTGTTTTGGTCTCATGAAGTGTAGCCGA 576
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 604 TTGTTTGATAAGGTTGGGAATCCTAGGCTGTCTTGTTTCGGTCTCATGAAGTGTAGCCGA 663
Query 577 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 723
Query 637 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGAACCTTGTTACTGGATCTTATGAGC 696
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 724 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGC 783
Query 697 GGCAGACATATTCCACCAAACCATGCACTTGATCTGTTCCGTGGTAAAAACTATTTGGTG 756
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 784 GGCAGACATATTCCACCTAACCATGCACTTGATCTATTCCGTGGTAAAAACTATTTGGTG 843
Query 757 CTAATGGATTCAGCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTTATCCAT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 844 CTAATGGATTCAGCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTAATCCAT 903
Query 817 CTAGCTTCCCGCTGTTTGCGCCCTGAACCAGACGAGAGGCCAAGCATAAAGTTTCTTATG 876
||||||||||||||||| || ||| ||||||||||||| ||||| |||||||||||||||
Sbjct 904 CTAGCTTCCCGCTGTTTCCGGCCTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATG 963
Query 877 TCAGCTCTTTCAAGACTTGAGAAAAGAGCTGAGTTATGGCCCAACGTCAAAGAAGAAAAC 936
|| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 964 TCTGCTCTTTCAAGACTTGAGAAACGAGCTGAGTTATGGCCCAACGTCAACGAAGAAAAC 1023
Query 937 ATCCCTACTCCATCATACACTGAACCTGCAACAAAGGAGCCATTGCCCTTGACCCCTTTC 996
|| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1024 ATTCCTACTCCATCAGACACTAAACCTGCAACAAAGGAGCCATTGCGCTTGACCCCTTTC 1083
Query 997 GGAGAAGCATGCTGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGG 1056
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1084 GGAGAAGCATGCTGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGG 1143
Query 1057 TATGGAGAGGATGATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TATGGAGAGGATGATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAA 1203
Query 1117 ATGCAAGAGAATATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTT 1176
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1204 ATGCAAGAGAATATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTT 1263
Query 1177 GAAACCGCAATCGAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACA 1236
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GAAACAGCAATCGAATTTTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACA 1323
Query 1237 GTATTAGCCAGACGGTGTCTATGTTACCTAATGAG-TGATATGTTCCGCGAGGCTCTAAG 1295
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1324 GTATTAGCCAGACGGTGTCTATGTTACCTAATGAGCT-ATATGTTCCGCGAGGCTCTAAG 1382
Query 1296 TGATGCGATGCAAACTCAGGTCGCATCGCCAGAGTTTTCGATCGCTCTCTACTTACAAGC 1355
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1383 TGATGCGATGCAAGCTCAGGTCGCATCGCCAGAGTTTTCAATCGCTCTCTACTTACAATC 1442
Query 1356 AGCTTGTCTTTTAAAGCTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTC 1415
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GGCTTGTCTTTTAAAGCTTGGAATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTC 1502
Query 1416 TTCTCTCGAAGCTTTTTAG 1434
|||||||||||||||||||
Sbjct 1503 TTCTCTCGAAGCTTTTTAG 1521
> Ahg486973 jgi|Araly1|486973|fgenesh2_kg.6__107__AT5G01060.1
Length=1497
Score = 1123 bits (608), Expect = 0.0
Identities = 1140/1392 (82%), Gaps = 55/1392 (4%)
Strand=Plus/Plus
Query 75 TTTCCTG-GAGTTCAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCC-GAC 132
||||| | |||||||| || || ||| ||||| |||| || ||||| ||||||||| ||
Sbjct 129 TTTCC-GTGAGTTCAGTTTAGAGCAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGGA- 186
Query 133 AACATCGTGTCGGAGCACAACGAGAGGGTTCCTAACATCGTCTACAAAGGCCAGCTC-AA 191
||| |||| ||||||||||| || || || |||||||||||||| || | ||| |
Sbjct 187 AACGTCGTCTCGGAGCACAATGATTCCGTACCAAACATCGTCTACAAGGGAAAACTCGGA 246
Query 192 CGACGGAAGAAAG-ATCGCCGTCAAGCGGTTTCAACGGCTTTCATGGCCTGATTCTTTAG 250
||||| | | ||||||||||| ||||||||| | ||||| ||||||||| |||| |
Sbjct 247 -GACGGTCG-TCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCG 304
Query 251 AATTCATCGAGGAAGCACAAGCTGTAGGGAGA-TGTAGGAGTGAGCATATGGCCAATTTG 309
|||||||| | |||||||||||||| |||||| || |||||||| |||||||| ||||||
Sbjct 305 AATTCATCAATGAAGCACAAGCTGTTGGGAGATTG-AGGAGTGAACATATGGCGAATTTG 363
Query 310 ATCGGTTGTTGCTCAGAAGGTC-ACGAGAGGTTGCTTGTTGCTGAGTACATGCCTAATGA 368
||||||||||| | | | | | ||||||| || |||||||||||||| ||||||||||
Sbjct 364 ATCGGTTGTTGTTGTG-ATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATGG 422
Query 369 AACACTTGCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAGTGGGAAATGAGGTT 428
|||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 423 AACACTAGCAAAGCATCTTTTTCACTGGGAGAAAAGACCGATGAAATGGGAAATGAGGTT 482
Query 429 GAGAGTTGCGT-TACATACTGCAACAGCCTTGGAGTACTGTAATGATTGGGGAATAGATT 487
|| |||||| | | ||||| |||| ||| |||||||| ||||||||| ||||||||||
Sbjct 483 GAAAGTTGC-TCTGCATACCGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATAGATT 541
Query 488 TGTATCACGATCTTAACACC-TACA-GAATATTGTTTGACAAGGTTGGGAATCCTAGGCT 545
| || || |||||||| || |||| || || ||||||| ||| |||||||||| |||
Sbjct 542 TATACCATGATCTTAA-TCCTTACAGGATTA-TGTTTGATAAGACGGGGAATCCTAAGCT 599
Query 546 GTCTTGTTTTGGTCTCATGAAGTGTAGCCGA-GAGGGAAAGAGCTATAGTACCAACTTGG 604
||||| ||||||||||||||| ||| | | || ||||||| ||||| |||||||| |
Sbjct 600 TTCTTGCTTTGGTCTCATGAAGAATAGTC-ATGAAGGAAAGAATTATAGCACCAACTTAG 658
Query 605 CATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCACATTTA 664
||||||||||||| || ||||| || || ||||| |||||||||||||| ||| ||||||
Sbjct 659 CATTTGCTCCTCCCGAGTATTTGCGCCTTGGTACCGTGATACCGGAGAGCGTCCCATTTA 718
Query 665 GCTTCGGAACCT-TGTTACTGGATCTTATGAGCGGCAGACATATTCCACCAAACCATGCA 723
|||| |||| || ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 GCTTTGGAA-CTCTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCATGCA 777
Query 724 CTTGATCTGTTCCGTGGTAAAAACTATTTGGTGCTAATGGATTCAGCTCTGGATGGTCAA 783
|||||| ||||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 CTTGATTTGTTCAGAGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGGTCAG 837
Query 784 TTCTCTGATGAGGATAGAACAGAACTTATCCATC-TAGCTTCCCGCTGTTTGC-GCCCTG 841
||||||||||| || || |||||||| || || | ||||||| || |||||| | ||
Sbjct 838 TTCTCTGATGAAGACAGGACAGAACTAATACA-CATAGCTTCTCGATGTTTGAAGAG-TG 895
Query 842 AACCAGACGAGAGGCCAAGCATAAAGTTTCTTATGTC-AGCTCTTTCAAGACTTGAGAAA 900
|||| || ||||||||||| ||||||||||||| | | | ||||||| |||||| |||||
Sbjct 896 AACCTGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGCGA-CTCTTTCTAGACTTCAGAAA 954
Query 901 AGAGCTGAGTTATGGCCCA--AC-GTCAAAGAAGAAAACATCCCTACTCCATCATACA-- 955
|||| ||||||| || | | |||||| | || || || |||||||| |||
Sbjct 955 CGAGCCAAGTTATGTCCTATTAATGTCAAA-A-GACCT-ATGTCTCCTCCATCAAACAAT 1011
Query 956 CTGAACCTGCAA---C-AAA---G-----GAGCCATTGCCCTTGACCCCTTTCGGAGAAG 1003
||| |||| || | ||| | ||| ||||| ||||| ||||||||||| |
Sbjct 1012 CTG--CCTGAAAAGACTAAATCTGCAAAAGAGTCATTGAAGTTGACTCCTTTCGGAGATG 1069
Query 1004 CATGCTGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGGTATGGAG 1063
| || | ||||| ||||||||| |||| || ||||| || |||||||| ||||||| ||
Sbjct 1070 CGTGTTCGAGAGCAGATCTAAGTAGTATACATGAACTGCTAGAGAAACTTGGGTATGAAG 1129
Query 1064 AGGATGATGTGGT-GGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCAA 1122
| ||||||| ||| ||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct 1130 AAGATGATGGGGTCGGTAAC----GAGTTTTCATTCCAAATGTGGACGGGTGAAATGCAA 1185
Query 1123 GAGAATATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAACC 1182
||||||||||| ||||||||||| ||||||| ||| |||| ||| ||||||||||| |||
Sbjct 1186 GAGAATATGGACTACAAGAAGCATGGAGATGTCGCGTTTCTTGCAAAAGATTTTGATACC 1245
Query 1183 GCAATCGAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATTA 1242
|| || ||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct 1246 GCCATTGAATTCTACACAGAGTTCATGAGTGGAGCTCCTGCGGTGTCACCAACAGTATTG 1305
Query 1243 GCCAGACGGTGTCTATGTTACCTAATGAGTGATATGTTCCGCGAGGCTCTAAGTGATGCG 1302
|| ||| ||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1306 GCAAGAAGGTGTCTTTGTTACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGTGATGCG 1365
Query 1303 ATGCAAACTCAGGTCGCATCGCCAGAGTTTTCGATCGCTCTCTACTTACAAGCAGCTTGT 1362
|||||| | || || || || || || | | ||| |||| ||||||||||||||||||
Sbjct 1366 ATGCAAGCGCAAGTAGCTTCACCTGAATGGCCAATCCCTCTTTACTTACAAGCAGCTTGT 1425
Query 1363 CTTTTAAAGCTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCTC 1422
|| || ||||| | |||||| ||||||||||||||||| |||||||||| ||| ||||
Sbjct 1426 CTCTTCAAGCTAGAGATGGAAGCTGAAGCTAAAGAAGCAGTTAGACATGGTTCTGCTCTT 1485
Query 1423 GAAGCTTTTTAG 1434
|| |||| ||||
Sbjct 1486 GAGGCTTATTAG 1497
> Ahg333388 jgi|Araly1|333388|fgenesh1_pm.C_scaffold_710000001
Length=1407
Score = 1114 bits (603), Expect = 0.0
Identities = 670/703 (95%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 38 ATAATAAAGAAGAAGATGAAGGAAGTACTTGTCCTAATTTCCTGGAGTTCAGCTTGGAAC 97
||||||| ||||| |||||||||||| |||||| | ||||| ||| || ||||||||||
Sbjct 83 ATAATAACGAAGACGATGAAGGAAGTGTTTGTCCGATTTTCCGGGAATTTAGCTTGGAAC 142
Query 98 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGACAACATCGTGTCGGAGCACAACGAGA 157
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 143 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGGCAACATCGTGTCGGAGCACAACGAAA 202
Query 158 GGGTTCCTAACATCGTCTACAAAGGCCAGCTCAACGACGGAAGAAAGATCGCCGTCAAGC 217
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 203 GGGTTCCTAACATCGTCTACAAAGGGCAGCTCAACGACGGAAGAAAGATCGCTGTCAAGC 262
Query 218 GGTTTCAACGGCTTTCATGGCCTGATTCTTTAGAATTCATCGAGGAAGCACAAGCTGTAG 277
||||| || |||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 263 GGTTTAAAAGGCTTTCATGGCCTGATTCTTTCGAATTCATCGAAGAAGCACAAGCTGTTG 322
Query 278 GGAGATGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 337
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 323 GGAGATGTAGGAGTGAGCATATGGCTAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 382
Query 338 GGTTGCTTGTTGCTGAGTACATGCCTAATGAAACACTTGCTAAGCATCTCTTTCACTGGG 397
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 383 GGTTGCTCGTTGCTGAGTACATGCCTAATGGAACACTTGCTAAGCATCTCTTTCACTGGG 442
Query 398 AGAAAAGACCAATGAAGTGGGAAATGAGGTTGAGAGTTGCGTTACATACTGCAACAGCCT 457
|||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct 443 AGAAAAGACCAATGAAATGGGAAATGAGATTAAGGGTTGCGTTACATACTGCAACAGCCT 502
Query 458 TGGAGTACTGTAATGAT-TGGGGAATAGATTTGTATCACGATCTTAACACCTACAGAATA 516
||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 503 TGGAGTACTGTAATGATAT-GGGAATAGATTTGTATCATGATCTTAACACCTACAGAATA 561
Query 517 TTGTTTGACAAGGTTGGGAATCCTAGGCTGTCTTGTTTTGGTCTCATGAAGTGTAGCCGA 576
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 562 TTGTTTGATAAGGTTGGGAATCCTAGGCTGTCTTGTTTCGGTCTCATGAAGTGTAGCCGA 621
Query 577 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 681
Query 637 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGAACCTTGTTACTGGATCTTATGAGC 696
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 682 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGC 741
Query 697 GGCAGACATATTCCACCAAACCATGCACTTGATCTGTTCCGTG 739
||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 742 GGCAGACATATTCCACCTAACCATGCACTTGATCTATTCCGTG 784
Score = 896 bits (485), Expect = 0.0
Identities = 537/562 (96%), Gaps = 3/562 (1%)
Strand=Plus/Plus
Query 769 GCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTTATCCATCTAGCTTCCCGC 828
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 784 GCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTAATCCATCTAGCTTCCCGC 843
Query 829 TGTTTGCGCCCTGAACCAGACGAGAGGCCAAGCATAAAGTTTCTTATGTCAGCTCTTTCA 888
||||| || ||| ||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 844 TGTTTCCGGCCTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATGTCTGCTCTTTCA 903
Query 889 AGACTTGAGAAAAGAGCTGAGTTATGGCCCAACGTCAAAGAAGAAAACATCCCTACTCCA 948
|||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 904 AGACTTGAGAAACGAGCTGAGTTATGGCCCAACGTCAACGAAGAAAACATTCCTACTCCA 963
Query 949 TCATACACTGAACCTGCAACAAAGGAGCCATTGCCCTTGACCCCTTTCGGAGAAGCATGC 1008
||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 964 TCAGACACTAAACCTGCAACAAAGGAGCCATTGCGTTTGACCCCTTTCGGAGAAGCATGC 1023
Query 1009 TGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGGTATGGAGAGGAT 1068
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1024 TGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGGTATGGAGAGGAT 1083
Query 1069 GATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCAAGAGAAT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCAAGAGAAT 1143
Query 1129 ATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAACCGCAATC 1188
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1144 ATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAACAGCGATC 1203
Query 1189 GAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATTAGCCAGA 1248
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GAATTTTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATTAGCCAGA 1263
Query 1249 CGGTGTCTATGTTACCTAATGAG-TGATATGTTCCGCGAGGCTCTAAGTGATGC-GATGC 1306
||||||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||
Sbjct 1264 CGGTGTCTATGTTACCTAATGAGCT-ATATGTTCTGCGAGGCTCTAAGTGATGCTGATGC 1322
Query 1307 AAACTCAGGTCGCATCGCCAGA 1328
|| |||||||||||||||||||
Sbjct 1323 AAGCTCAGGTCGCATCGCCAGA 1344
Score = 106 bits (57), Expect = 5e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1372 CTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCTCGAAGCTTTT 1431
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1345 CTTGGAATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCTCGAAGCTTCT 1404
Query 1432 TAG 1434
|||
Sbjct 1405 TAG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5