BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09250.2
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478240 jgi|Araly1|478240|fgenesh2_kg.3__941__AT3G09250.1 1131 0.0
> Ahg478240 jgi|Araly1|478240|fgenesh2_kg.3__941__AT3G09250.1
Length=1036
Score = 1131 bits (612), Expect = 0.0
Identities = 691/730 (95%), Gaps = 2/730 (0%)
Strand=Plus/Plus
Query 50 ATCTCTTTGAATATTTCGATTCCTTGTTACCATGGCGCTTCATGGGTCTGGAGTTTTT-T 108
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1 ATCTCTTTGAATATTTTGATTCCTTGTTTCCATGGCGCTTCATGGGTCTGGA-TTTTTAT 59
Query 109 GTAAAGTTTCAAACATGGTAGAGATCACTTCTCCGTTTGGTGGTTCCATGAGGCTGCTTC 168
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 60 GCAAAGTTTCAAACATGGTAGAGATCACTTCTCTGTTTGGTGGTTCGATGAGGCTGCTTC 119
Query 169 ACTTGCCTAAATCTTATCCGATTCACTGCAACATGGTTTCAGCTAGCAATACATTTGGGT 228
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 120 ACTTGCCTAAATCTTATCCGATTCATTGCAACATGGTTTCAGCTAGCAATACATTCGGTT 179
Query 229 CAGCTCATCTCAAGCTGCAAAACAAAGAACCGTGCTCCCGTTTAAGGCCTTGTCGAGTCA 288
| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CTGGTCATCTCAAGCTTCAAAACAAAGAACCGTGCTCCCGTTTTAGGCCTTGTCGAGTCA 239
Query 289 AACGCGAAGAAAATAACCAAACTGCGGATGTTGAAAGCATTTCAATGGATGAGAACACGT 348
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 240 AACGCGAAGACAATAACCAAACTGCGGATGTTGAAAGCATTTCAGTGGATGAGACCACGT 299
Query 349 TGAAGCAAGATCTCGAGACTGCGGTCCAGGAAGAGAATTATGTGGAGGCAGCTAAAATCC 408
|||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||
Sbjct 300 TGAAGCAAGATCTCGAGATTGCGATCCAGGAAGAAAACTATGTGGAGGCAGCTAAAATCC 359
Query 409 GTGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTC 468
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTC 419
Query 469 GGTTCTACCAATCTTTCAGAAACGGGGATTTAGCTGCGATGCAATCACTATGGTCAAAAT 528
||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||
Sbjct 420 GGTTCTACCAATCTTTCAGAAACGGTGATTTAGCTGCAATGCAATCTTTGTGGTCAAAAT 479
Query 529 CAGGAAACCCGTGCTGTGTACATCCAGGGGCCAAAGGCATAACTGGTTATGATTACGTGA 588
| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 480 CCGGAAACCCGTGCTGTGTGCATCCAGGGGCCAAAGGCATTACTGGGTATGATTACGTGA 539
Query 589 TGGAAAGCTGGGAGCTTGTGTGGATGAACTATGAGTTTCCGTTACTGATTGAGCTGAAAG 648
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 TGGAAAGCTGGGAATTTGTGTGGATGAACTATGAGTTTCCGTTACAGATTGAGCTGAAAG 599
Query 649 ATGTCGAGGTTCATGTCCGAGGAGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGA 708
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 ATATTGAGGTTCATGTCCGAGGCGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGA 659
Query 709 CGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATCGATG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 CGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATAGATG 719
Query 769 GACAATGGTT 778
| ||||||||
Sbjct 720 GGCAATGGTT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5