BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09250.2 Length=892 Score E Sequences producing significant alignments: (Bits) Value Ahg478240 jgi|Araly1|478240|fgenesh2_kg.3__941__AT3G09250.1 1131 0.0 > Ahg478240 jgi|Araly1|478240|fgenesh2_kg.3__941__AT3G09250.1 Length=1036 Score = 1131 bits (612), Expect = 0.0 Identities = 691/730 (95%), Gaps = 2/730 (0%) Strand=Plus/Plus Query 50 ATCTCTTTGAATATTTCGATTCCTTGTTACCATGGCGCTTCATGGGTCTGGAGTTTTT-T 108 |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| | Sbjct 1 ATCTCTTTGAATATTTTGATTCCTTGTTTCCATGGCGCTTCATGGGTCTGGA-TTTTTAT 59 Query 109 GTAAAGTTTCAAACATGGTAGAGATCACTTCTCCGTTTGGTGGTTCCATGAGGCTGCTTC 168 | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 60 GCAAAGTTTCAAACATGGTAGAGATCACTTCTCTGTTTGGTGGTTCGATGAGGCTGCTTC 119 Query 169 ACTTGCCTAAATCTTATCCGATTCACTGCAACATGGTTTCAGCTAGCAATACATTTGGGT 228 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 120 ACTTGCCTAAATCTTATCCGATTCATTGCAACATGGTTTCAGCTAGCAATACATTCGGTT 179 Query 229 CAGCTCATCTCAAGCTGCAAAACAAAGAACCGTGCTCCCGTTTAAGGCCTTGTCGAGTCA 288 | | |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 180 CTGGTCATCTCAAGCTTCAAAACAAAGAACCGTGCTCCCGTTTTAGGCCTTGTCGAGTCA 239 Query 289 AACGCGAAGAAAATAACCAAACTGCGGATGTTGAAAGCATTTCAATGGATGAGAACACGT 348 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 240 AACGCGAAGACAATAACCAAACTGCGGATGTTGAAAGCATTTCAGTGGATGAGACCACGT 299 Query 349 TGAAGCAAGATCTCGAGACTGCGGTCCAGGAAGAGAATTATGTGGAGGCAGCTAAAATCC 408 |||||||||||||||||| |||| |||||||||| || |||||||||||||||||||||| Sbjct 300 TGAAGCAAGATCTCGAGATTGCGATCCAGGAAGAAAACTATGTGGAGGCAGCTAAAATCC 359 Query 409 GTGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTC 468 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GGGATAAACTAAAAGAGCTTCAAGAAGACAACAAAGCCTCTGTTTTATCAGCCAATTCTC 419 Query 469 GGTTCTACCAATCTTTCAGAAACGGGGATTTAGCTGCGATGCAATCACTATGGTCAAAAT 528 ||||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||| Sbjct 420 GGTTCTACCAATCTTTCAGAAACGGTGATTTAGCTGCAATGCAATCTTTGTGGTCAAAAT 479 Query 529 CAGGAAACCCGTGCTGTGTACATCCAGGGGCCAAAGGCATAACTGGTTATGATTACGTGA 588 | ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 480 CCGGAAACCCGTGCTGTGTGCATCCAGGGGCCAAAGGCATTACTGGGTATGATTACGTGA 539 Query 589 TGGAAAGCTGGGAGCTTGTGTGGATGAACTATGAGTTTCCGTTACTGATTGAGCTGAAAG 648 ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 TGGAAAGCTGGGAATTTGTGTGGATGAACTATGAGTTTCCGTTACAGATTGAGCTGAAAG 599 Query 649 ATGTCGAGGTTCATGTCCGAGGAGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGA 708 || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 600 ATATTGAGGTTCATGTCCGAGGCGAAGTAGGTTATGTAACGTGTATGGAGTTTGTGAAGA 659 Query 709 CGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATCGATG 768 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 660 CGAAAGGGAGTAGTAGTTGGGGAGCTCAGTTTGTGTCGAATGTGTTTGAACGGATAGATG 719 Query 769 GACAATGGTT 778 | |||||||| Sbjct 720 GGCAATGGTT 729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33052569039 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5