BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09260.1
Length=1806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1 2715 0.0
Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1 1511 0.0
Ahg952424 jgi|Araly1|952424|scaffold_7000006.1 303 2e-81
> Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1
Length=1941
Score = 2715 bits (1470), Expect = 0.0
Identities = 1644/1726 (95%), Gaps = 19/1726 (1%)
Strand=Plus/Plus
Query 52 ATGGTTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTCT 111
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 220 ATGGCTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTAACCATCGTCGCCTCT 279
Query 112 CCAGCAAATGCAGATGGACCTGTTTGCCCGCCGTCGAACAAACTAAGCCGGGCAAGTTTC 171
||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 280 CCAGCAAATGCAGATGGACCTGTATGCCCGCCTTCGACCAAACTAAGCCGGGCAAGTTTC 339
Query 172 CCTGAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAGGTCGAAGGTGCGATTAAT 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 340 CCTGAAGGTTTTTTATTTGGCACCGCTACTGCGGCATACCAGGTCGAAGGTGCAATTAAT 399
Query 232 GAAACTTGTCGTGGACCAGCCTTATGGGACATCTACTGTAGAAGATATCCAGAGAGGTGC 291
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||
Sbjct 400 GAAACTTGTCGTGGACCAGCTTTATGGGACATCTACTGTAGGAGATATCCTGAGAGATGC 459
Query 292 AATAACGATAACGGCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATCCAA 351
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 460 AATAACGATAACGGTGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATTCAA 519
Query 352 CTAATGAAGAATCTAAACACAGACGCCTTT-AGAATGTCTATCGCATGGCCAAGAATATT 410
||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 520 CTAATGAAGAACCTAAACACAGACG-CTTTCAGAATGTCTATCGCATGGCCAAGAATATT 578
Query 411 TCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTCTACCACGACCT 470
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 579 TCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTTTACCATGACCT 638
Query 471 CATCGACGAGCTCATAAAAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACAC 530
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CATCGACGAGCTCATAAGAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACAC 698
Query 531 TCCACAAGATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTT 590
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 699 TCCACAAGATTTAGAAGACGAATATGGCGGATTTTTAAGCGATAGGATTGTGAAGGATTT 758
Query 591 CCGAGAGTATGCAGATTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCAC 650
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 CCGAGAGTATGCAGACTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCAC 818
Query 651 TTTCAATGAGCCATGGGTTTTCTCGCACGCTGGCTATGACGTAGGCAAAAAGGCACCTGG 710
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 819 TTTCAATGAGCCATGGGTTTTCTCGCACGCTGGTTATGACGTAGGCAAAAAGGCACCTGG 878
Query 711 TCGTTGCTCTTCTTACGTCAATGCTAAATGCCAAGACGGACGATCAGGATACGAGGCTTA 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 ACGTTGCTCTTCTTACGTCAATGCTAAATGCCAAGACGGACGATCAGGATACGAGGCTTA 938
Query 771 CCTTGTCACTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGAAGCTTACCGGAAATG 830
|| |||||||||||||||||| |||||||||||||||| |||||||||||| | |||||
Sbjct 939 TCTCGTCACTCACAATCTCCTTCTCTCTCACGCAGAAGCCGTTGAAGCTTACAGAAAATG 998
Query 831 CGAAAAGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGGTTCGAAGCACA 890
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 999 CGAAAAGTGTAAAGGTGGGAAGATTGGAATCGCACATAGTCCGGCTTGGTTCGAAGCACA 1058
Query 891 TGACCTTGCTGATTCACAAGACGGTGCGTCCATCGACCGTGCACTTGACTTTATTTTGGG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TGACCTTGCTGATTCACAAGACGGTGCGTCCATCGACCGTGCACTTGACTTTATTTTGGG 1118
Query 951 ATGGCATCTAGACACAACTACATTTGGAGATTATCCACAGATCATGAAAGACATTGTTGG 1010
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATGGCATCTAGACACAACGACGTTTGGAGATTATCCACAGATCATGAAAGACATTGTTGG 1178
Query 1011 ACATAGATTGCCTAAATTTACAACTGAGCAGAAAGCAAAACTGAAAGCTTCTACCGATTT 1070
|||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1179 ACATAGATTGCCCAAATTTACAACTGAGCAGAAAGCAAAATTGAAAGATTCTACCGATTT 1238
Query 1071 CGTTGGGCTCAACTACTATACTTCAGTGTTTTCAAACCATTTGGAGAAACCTGATCCTTC 1130
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1239 CGTTGGGCTCAACTACTATACTTCGGTGTTTTCAAACCATTTGGAGAAACCTGATCCTTC 1298
Query 1131 AAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCTAAGAATGCGCAAAATTA 1190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1299 AAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCTAAGAATCCGCAAAATTA 1358
Query 1191 CGCCATTGGTAGCAAGCCTTTGACCGCTGCATTGAACGTTTACTCGAGAGGTTTTAGAAG 1250
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1359 CTCCATTGGTAGCAAGCCTTTGACCGCTGCATTGAACGTTTACTCGAGAGGGTTTAGAAG 1418
Query 1251 TCTGTTGAAGTACATTAAGGACAAATACGCAAATCCGGAAATTATGATCATGGAAAACGG 1310
||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1419 TCTTTTGAAGTACATCAAGGATAAATACGCAAATCCCGAAATTATGATCATGGAAAACGG 1478
Query 1311 ATATGGAGAAGAACTAGGGGCCTCAGATTCTG-TTGCTGTTGGTACCGCTGATCATAACA 1369
||| ||||||||||| |||||||||||||| | | |||||||||||||||||| | ||||
Sbjct 1479 ATACGGAGAAGAACTTGGGGCCTCAGATTC-GATCGCTGTTGGTACCGCTGATTACAACA 1537
Query 1370 GGAAATATTATCTTCAGAGGCATCTTTTGAGTATGCAAGAAGCTGTTTGCATCGACAAAG 1429
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 GAAAATATTATCTTCAGAGGCATCTTTTGAGTATGCAAGAAGCTGTTTGCATCGACAAAG 1597
Query 1430 TGAATGTTACAGGATACTTTGTATGGTCATTGTTGGATAACTTCGAGTGGCAAGATGGTT 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 TGAATGTTACAGGATACTTTGTATGGTCATTGTTGGATAACTTCGAGTGGCAAGATGGTT 1657
Query 1490 ACAAAAACAGATTTGGACTCTACTACGTTGATTTCAAAAATAACCTCACACGTTACGAGA 1549
| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1658 ATAAAAACAGATTCGGACTCTACTACATTGATTTCAAAAATAACCTCACACGTTACGAGA 1717
Query 1550 AAGAATCCGGCAAGTATTACAAGGATTTCCTCAGTCAAGGTGTTCGTCCATCCGCGCTCA 1609
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct 1718 AAGAATCCGGCAAGTATTACAAGGAGTTCCTCAGTCAAGGTGTTCGTCCATCAGCGATCA 1777
Query 1610 AGAAGGATGAGCTTTAAGCTAT-TT-------CTGTTTCAATGTGT-TTT--T--CCTAT 1656
|||||||||||||||||||||| || |||||||||||||| ||| | |||||
Sbjct 1778 AGAAGGATGAGCTTTAAGCTATATTTGGTTTTCTGTTTCAATGTGTCTTTAATTTCCTAT 1837
Query 1657 GTTTTACTTTGTGAGTGACCAAGATTCATGAGGTCTTGGTTCTAATAAAAAGAGTTTATT 1716
||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1838 GTTTTTCTTTGTGATTGACCAAGATTCATGAGGTCTTGGTTATAATAAAA-GAGTTTATT 1896
Query 1717 TTTCTTCTCATTTTTCATTGTCTACATGATTTGCCAGATCTACAAG 1762
|| ||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct 1897 TT-CTTTTCATTTTTCAATGTCTACATGATTTGCCAGATATACAAG 1941
Score = 327 bits (177), Expect = 1e-88
Identities = 206/219 (94%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 1 AGAACCATCCTAAACATTTTTTCTTGAATAAAATC----AG--AATTACAAACAAAAATG 54
|||||||||||||||||||| ||||||| |||||| || |||||||||||||||||
Sbjct 1 AGAACCATCCTAAACATTTTATCTTGAAGAAAATCAGAAAGTTAATTACAAACAAAAATG 60
Query 55 GTTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTCTCCA 114
| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCTTTGCAAAAGCTTCCTCTCGTTGGGCTGCTTTTGCTCCTAACCATCGTCGCCTCTCCA 120
Query 115 GCAAATGCAGATGGACCTGTTTGCCCGCCGTCGAACAAACTAAGCCGGGCAAGTTTCCCT 174
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 121 GCAAATGCAGATGGACCTGTTTGCCCGCCGTCGACCAAACTAAGTCGGGCAAGTTTCCCT 180
Query 175 GAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAG 213
|||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAG 219
> Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1
Length=1756
Score = 1511 bits (818), Expect = 0.0
Identities = 1355/1607 (84%), Gaps = 66/1607 (4%)
Strand=Plus/Plus
Query 58 TTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTC-TCCAGC 116
||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| || | |
Sbjct 7 TTGCAAAAGTTTCCTCTCATGGGGCTGCTTTTGCTCCTAACCATCGTCGTCTCTTCGA-C 65
Query 117 AAAT-G-C--AGATGGA-CCTGTTTGCCCGCCGT-CGAACAAACTAAGCCGGGCAAGTTT 170
||| | | ||| || |||||||||||| | | || |||||||||||| ||||||||
Sbjct 66 -AATAGCCGTCGAT-GATCCTGTTTGCCCGAC-TACGTCCAAACTAAGCCGAGCAAGTTT 122
Query 171 CCCTGAA-GGTTTTTTATTTGGCACGGCTACTGCGGCATACCAGGTCGAAGGTGCGATTA 229
|||| || |||||||| ||||||||||||||||| || | ||||| |||||||| ||||
Sbjct 123 CCCT-AACGGTTTTTTGTTTGGCACGGCTACTGCTGCGTTTCAGGTTGAAGGTGCAATTA 181
Query 230 ATGAAACTTGTCGTGGACCAGCCT-TATGGGACATCTACTGTAGAAGATATCCAGAGAGG 288
|||||||||| |||||||| | || ||||||| |||| ||||| ||| ||||||||||
Sbjct 182 ATGAAACTTGCCGTGGACC-GGCTCTATGGGATATCTTTTGTAGGAGAAATCCAGAGAGA 240
Query 289 TGCAATAACGATAACGGCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATC 348
|| | | | | |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTAGTGGCCACAACGCCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATT 300
Query 349 CAACTAATGAAGAATCTAAACACAGACGCCTTTAGAATGTCTATCGCATGGCCAAGAATA 408
||||||||||||||||||||||||||||| || ||| | || ||| ||||| ||||||||
Sbjct 301 CAACTAATGAAGAATCTAAACACAGACGCATTCAGACTCTCAATCTCATGGTCAAGAATA 360
Query 409 TTTCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTCTACCACGAC 468
||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 361 TTTCCTCATGGAAGAAAGGAGAAGGGAGTGAGTCAATCTGGTGTGAAATTCTACCACGAT 420
Query 469 CTCATCGACGAGCTCATAAAAAATGGTATAAC-TCCATT-CGTTACTGTTTTTCACTGGG 526
||||||| |||||| |||||||||| || || ||| || ||| ||||||||||| ||||
Sbjct 421 GTCATCGATGAGCTCCTAAAAAATGGCAT-ACTTCC-TTCCGTGACTGTTTTTCATTGGG 478
Query 527 ACACTCCACAAGATTTAGAAGATGAATATGGCGGCTTT-TTAAGCGAAAGGATTGTGAAG 585
|||||||||||||||||||||| ||||||||||| ||| |||||| ||| ||||| ||
Sbjct 479 ACACTCCACAAGATTTAGAAGACGAATATGGCGG-TTTCTTAAGCCAAAACATTGTAAAA 537
Query 586 GATTTCCGAGAGTATGCAGATTTTGTTTTCCA-AGAATACGGTGGAAAAGTGAAACATTG 644
|||||||| || ||||||||||||||||| || |||||||||||||||||||||| | ||
Sbjct 538 GATTTCCGGGAATATGCAGATTTTGTTTT-CACAGAATACGGTGGAAAAGTGAAAAACTG 596
Query 645 GATCACTTTCAATGAGCCATGGGTTTTCTCGCACGCTGGCTATGACGTAGGCAAAAAGGC 704
|||||||||||| ||||||||||| ||| | || || || || ||||||||||| |||||
Sbjct 597 GATCACTTTCAACGAGCCATGGGTCTTCGCTCATGCAGGTTACGACGTAGGCAAGAAGGC 656
Query 705 ACCTGGTCGTTGCTCTTC-TTACG-TCAA---TGCTAAATG-CCAAGACGGACGATCAGG 758
||| || ||||| || || ||||| | || ||| || | || ||| |||||||| ||
Sbjct 657 ACCAGGACGTTGTTC-TCGTTACGTTAAAGGTTGC-GAA-GACCGAGATGGACGATCCGG 713
Query 759 ATACGAGGCTTACCTTGTCACTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGAAGC 818
|| |||||||| || |||| |||||| ||||| | | ||||||||||||| |||||||
Sbjct 714 TTATGAGGCTTATCTAGTCAGTCACAACCTCCTCAACGCTCACGCAGAAGCTGTTGAAGT 773
Query 819 TTACCGGAAATGCGAAAA-GTGTAAAGGTGGGAAGA-TCGGAATTGCACATAGTCCTGCT 876
|| || || |||| || ||||||| |||| | || |||| ||||||||||| |||
Sbjct 774 TTTCC------GCCAAAAGGT-TAAAGGTTGGAA-ATTCTGAATGGCACATAGTCCGGCT 825
Query 877 TGGTTCGAAGCACATGACCTTGCTGATTCACAA-GACGGTGCGTCCATCGACCGTGCACT 935
||||||||| ||||||||||| |||||| || ||| | | | ||| ||||| |||
Sbjct 826 TGGTTCGAACCACATGACCTTAAAGATTCA-AATGACACTCCAACTGTCGGCCGTGTACT 884
Query 936 TGACTTTATTTTGGGATGGCATCTAGACACAACTACATTTGGAGATTATCCACAGATCAT 995
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 885 TGACTTTATGTTGGGATGGCATCTAGACCCAACTACTTTTGGAGATTATCCACAAATCAT 944
Query 996 GAAAGACATTGTTGGACATAGATTGCCTAAATTTAC-AACTGAGCAGAAAGCAAAACTGA 1054
||||||| || |||| || ||||||||||||||||| || || ||| ||||||||| |||
Sbjct 945 GAAAGACCTTCTTGGCCACAGATTGCCTAAATTTACGAA-TGCGCAAAAAGCAAAATTGA 1003
Query 1055 AAGCTTCTACCGATTTCGTTGGGCTCAACTACTATACTTCAGTGTTTTCAAACCAT-TTG 1113
||| ||| ||||||||||| || || ||||||||||||||| |||||||||||| |
Sbjct 1004 AAGATTCGACCGATTTCGTAGGACTTAACTACTATACTTCAACATTTTCAAACCATAAT- 1062
Query 1114 GAGAAACCTGATCCTTCAAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCT 1173
||||| || ||||| || | |||||| |||| ||||||||||||| || | ||||| ||
Sbjct 1063 GAGAAGCCAGATCCGTCTACACCAAGTTGGAAGCAAGATTCTCTTGTTGCCTGGGAACCT 1122
Query 1174 AAGAATG-CGCAAAATTA-CGCCATTGGTAG-CAAGCCT-TTGACCGCTGCATTGAACGT 1229
||||||| || | | | |||||||||||| | ||||| || || ||||| ||| |||
Sbjct 1123 AAGAATGTCG-ACCA-CAGCGCCATTGGTAGTC-AGCCTCTT-ACTGCTGCGTTGCCCGT 1178
Query 1230 TTACTCGAGAGGTTTTAGAAGTCTGTTGAAGTACATTAAGGACAAATACGCAAATCCGGA 1289
||| | | ||||||||||||||| || |||||||| ||||| ||||||||||| || ||
Sbjct 1179 CTACGCTAAAGGTTTTAGAAGTCTTTTAAAGTACATCAAGGATAAATACGCAAACCCCGA 1238
Query 1290 AATTATGATCATGGAAAACGGATATGGAGA-AGAACTAGGGGCCTCAGATTCTGTTGCTG 1348
|||||||||||||||||| ||||||||||| | ||||| ||| | |||||| |||| |
Sbjct 1239 AATTATGATCATGGAAAATGGATATGGAGATA-AACTAAGGGACAAAGATTCGGTTGAGG 1297
Query 1349 TTGGTACCGCTGATCATAACAGGAAATATTATCTTCAGAGGCATCTTTTGAG-TATGCAA 1407
||||||| ||||||||||||||||||||||||||||||||||||||| || | |||| ||
Sbjct 1298 TTGGTACTGCTGATCATAACAGGAAATATTATCTTCAGAGGCATCTTCTG-GCTATG-AA 1355
Query 1408 -GAAGCTGTTTGCATCGACAAAGTGA-ATGTTACAGGATACTTTGTATGGTCATTGTTGG 1465
|| ||| ||||||||||||| |||| | ||||| |||||||||||||||||||||||||
Sbjct 1356 CGAGGCTATTTGCATCGACAAGGTGAGA-GTTACGGGATACTTTGTATGGTCATTGTTGG 1414
Query 1466 ATAACTTCGAGTGGCAAGATGGTTACAAAAACAGATTTGGACTCTACTACGTTGATTTCA 1525
||||||| || |||||||||||||| || || ||||| |||||||| ||||| |||||||
Sbjct 1415 ATAACTTTGAATGGCAAGATGGTTATAATAATAGATTCGGACTCTATTACGTCGATTTCA 1474
Query 1526 AAAATAACCTCACACGTTACGAGAAAGAATCCGGCAAGTATTACAAGGATTTCCTCAG-T 1584
||||||||||||||||||| ||||||||||| | |||||||||||| |||||||| || |
Sbjct 1475 AAAATAACCTCACACGTTATGAGAAAGAATCAGCCAAGTATTACAAAGATTTCCT-AGCT 1533
Query 1585 CAAGGTGTTCGTCCATCCGCGCTCAAGAAGGATGAGCTTTAAGCTAT 1631
||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1534 CAAGGTGTTCGTCCATCCGCGATCAAGAGGGATGAGCTTTAAGTTAT 1580
> Ahg952424 jgi|Araly1|952424|scaffold_7000006.1
Length=609
Score = 303 bits (164), Expect = 2e-81
Identities = 435/560 (78%), Gaps = 42/560 (8%)
Strand=Plus/Plus
Query 416 ATGGGAGAAAGGAGAAAGGAGTGAGTC-AAGCTGGTGTGCAATTCTACCACGACCTCATC 474
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 47 ATGGGAGAAAGGAGAAAGGAGTGAG-CAAAGCTGGTGTCCAATTCTACCACGACCTCATC 105
Query 475 GACGAGCTCATAAAAAATGG-TATAACTCCA-TTCGTTACTGTTTTTCACTGGGACACTC 532
|||||||| || ||||| || | | | ||| || || ||||| || ||||||||||| |
Sbjct 106 GACGAGCTTATCAAAAA-GGATCTTATTCCTCTT-GTGACTGTCTTCCACTGGGACAC-C 162
Query 533 CACAAG--ATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTT 590
| |||| |||||||||| ||||| || ||||| ||||| ||| ||||| ||||||||
Sbjct 163 C-CAAGTGATTTAGAAGACGAATACGGTGGCTTCCTAAGCCAAAATATTGTAAAGGATTT 221
Query 591 CC-GAGAGTATGCAGATTTTGTTTTCCAA-GAATACGGTGGA-AAAGTGAAACATTGGAT 647
| | || || ||||| ||||| ||| || |||| |||| | ||||| ||| ||||| |
Sbjct 222 CATG-GAATACGCAGAATTTGTGTTC-AACGAATTTGGTG-ACAAAGTAAAAAATTGGGT 278
Query 648 CACTTTCAATGAGCCATGGGT-TTTC-TCGCACGCTGGCTATGACGTAGGCAAA-AAGGC 704
||||||||||||||||||||| ||| ||| | | || || || | ||| ||| || ||
Sbjct 279 CACTTTCAATGAGCCATGGGTCTTTAGTCGTGC-C-GGTTACGATG-AGGGAAAGAAAGC 335
Query 705 ACCTGGTCGTTGCTCTTCTTACGTCAATGCTAAAT--GCCAAGACGGACGATCAGGATAC 762
||| || ||||||||| ||| |||| || | | |||| ||||||||||||||
Sbjct 336 ACCAGGACGTTGCTCTAAGTACCAAAATG--AATTCTGTGAAGATGGACGATCAGGATAT 393
Query 763 GAGGCTTACCTTGTCA-CTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGA-AGCTT 820
|| |||||||| || | | || || || ||||| ||||| || ||||| ||| | | ||
Sbjct 394 GAAGCTTACCTCGTTAGC-CATAACCTACTTATATCTCATGCCGAAGCTGTTTATATTTT 452
Query 821 ACCGGAAATGCGAAA-AGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGG 879
| | |||| ||| | ||||||||||||||||||||||| ||||| || ||||||
Sbjct 453 -CAG-AAAT---AAATACAA-AAAGGTGGGAAGATCGGAATTGCGCATAGCCCGGCTTGG 506
Query 880 TTCGAAGC-ACATG-ACC-TTGC--TGATTCACAAGACGGTGCGTCCATCGACCGTGCAC 934
||||| || ||||| | || ||| ||||||| ||||| ||||| || ||| |||
Sbjct 507 TTCGA-GCCACATGCATGATTTTAATGACGCACAAGATGGTGCATCCATTGAACGTTCAC 565
Query 935 TTGACTTTATTTTGGGATGG 954
|||||||||| ||||||||
Sbjct 566 TTGACTTTATGATGGGATGG 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67800636100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5