BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09260.1 Length=1806 Score E Sequences producing significant alignments: (Bits) Value Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1 2715 0.0 Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1 1511 0.0 Ahg952424 jgi|Araly1|952424|scaffold_7000006.1 303 2e-81 > Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1 Length=1941 Score = 2715 bits (1470), Expect = 0.0 Identities = 1644/1726 (95%), Gaps = 19/1726 (1%) Strand=Plus/Plus Query 52 ATGGTTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTCT 111 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 220 ATGGCTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTAACCATCGTCGCCTCT 279 Query 112 CCAGCAAATGCAGATGGACCTGTTTGCCCGCCGTCGAACAAACTAAGCCGGGCAAGTTTC 171 ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| Sbjct 280 CCAGCAAATGCAGATGGACCTGTATGCCCGCCTTCGACCAAACTAAGCCGGGCAAGTTTC 339 Query 172 CCTGAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAGGTCGAAGGTGCGATTAAT 231 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 340 CCTGAAGGTTTTTTATTTGGCACCGCTACTGCGGCATACCAGGTCGAAGGTGCAATTAAT 399 Query 232 GAAACTTGTCGTGGACCAGCCTTATGGGACATCTACTGTAGAAGATATCCAGAGAGGTGC 291 |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| Sbjct 400 GAAACTTGTCGTGGACCAGCTTTATGGGACATCTACTGTAGGAGATATCCTGAGAGATGC 459 Query 292 AATAACGATAACGGCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATCCAA 351 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 460 AATAACGATAACGGTGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATTCAA 519 Query 352 CTAATGAAGAATCTAAACACAGACGCCTTT-AGAATGTCTATCGCATGGCCAAGAATATT 410 ||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 520 CTAATGAAGAACCTAAACACAGACG-CTTTCAGAATGTCTATCGCATGGCCAAGAATATT 578 Query 411 TCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTCTACCACGACCT 470 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 579 TCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTTTACCATGACCT 638 Query 471 CATCGACGAGCTCATAAAAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACAC 530 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 639 CATCGACGAGCTCATAAGAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACAC 698 Query 531 TCCACAAGATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTT 590 |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 699 TCCACAAGATTTAGAAGACGAATATGGCGGATTTTTAAGCGATAGGATTGTGAAGGATTT 758 Query 591 CCGAGAGTATGCAGATTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCAC 650 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 759 CCGAGAGTATGCAGACTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCAC 818 Query 651 TTTCAATGAGCCATGGGTTTTCTCGCACGCTGGCTATGACGTAGGCAAAAAGGCACCTGG 710 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 819 TTTCAATGAGCCATGGGTTTTCTCGCACGCTGGTTATGACGTAGGCAAAAAGGCACCTGG 878 Query 711 TCGTTGCTCTTCTTACGTCAATGCTAAATGCCAAGACGGACGATCAGGATACGAGGCTTA 770 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 879 ACGTTGCTCTTCTTACGTCAATGCTAAATGCCAAGACGGACGATCAGGATACGAGGCTTA 938 Query 771 CCTTGTCACTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGAAGCTTACCGGAAATG 830 || |||||||||||||||||| |||||||||||||||| |||||||||||| | ||||| Sbjct 939 TCTCGTCACTCACAATCTCCTTCTCTCTCACGCAGAAGCCGTTGAAGCTTACAGAAAATG 998 Query 831 CGAAAAGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGGTTCGAAGCACA 890 |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 999 CGAAAAGTGTAAAGGTGGGAAGATTGGAATCGCACATAGTCCGGCTTGGTTCGAAGCACA 1058 Query 891 TGACCTTGCTGATTCACAAGACGGTGCGTCCATCGACCGTGCACTTGACTTTATTTTGGG 950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 TGACCTTGCTGATTCACAAGACGGTGCGTCCATCGACCGTGCACTTGACTTTATTTTGGG 1118 Query 951 ATGGCATCTAGACACAACTACATTTGGAGATTATCCACAGATCATGAAAGACATTGTTGG 1010 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1119 ATGGCATCTAGACACAACGACGTTTGGAGATTATCCACAGATCATGAAAGACATTGTTGG 1178 Query 1011 ACATAGATTGCCTAAATTTACAACTGAGCAGAAAGCAAAACTGAAAGCTTCTACCGATTT 1070 |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1179 ACATAGATTGCCCAAATTTACAACTGAGCAGAAAGCAAAATTGAAAGATTCTACCGATTT 1238 Query 1071 CGTTGGGCTCAACTACTATACTTCAGTGTTTTCAAACCATTTGGAGAAACCTGATCCTTC 1130 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1239 CGTTGGGCTCAACTACTATACTTCGGTGTTTTCAAACCATTTGGAGAAACCTGATCCTTC 1298 Query 1131 AAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCTAAGAATGCGCAAAATTA 1190 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1299 AAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCTAAGAATCCGCAAAATTA 1358 Query 1191 CGCCATTGGTAGCAAGCCTTTGACCGCTGCATTGAACGTTTACTCGAGAGGTTTTAGAAG 1250 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1359 CTCCATTGGTAGCAAGCCTTTGACCGCTGCATTGAACGTTTACTCGAGAGGGTTTAGAAG 1418 Query 1251 TCTGTTGAAGTACATTAAGGACAAATACGCAAATCCGGAAATTATGATCATGGAAAACGG 1310 ||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1419 TCTTTTGAAGTACATCAAGGATAAATACGCAAATCCCGAAATTATGATCATGGAAAACGG 1478 Query 1311 ATATGGAGAAGAACTAGGGGCCTCAGATTCTG-TTGCTGTTGGTACCGCTGATCATAACA 1369 ||| ||||||||||| |||||||||||||| | | |||||||||||||||||| | |||| Sbjct 1479 ATACGGAGAAGAACTTGGGGCCTCAGATTC-GATCGCTGTTGGTACCGCTGATTACAACA 1537 Query 1370 GGAAATATTATCTTCAGAGGCATCTTTTGAGTATGCAAGAAGCTGTTTGCATCGACAAAG 1429 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1538 GAAAATATTATCTTCAGAGGCATCTTTTGAGTATGCAAGAAGCTGTTTGCATCGACAAAG 1597 Query 1430 TGAATGTTACAGGATACTTTGTATGGTCATTGTTGGATAACTTCGAGTGGCAAGATGGTT 1489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1598 TGAATGTTACAGGATACTTTGTATGGTCATTGTTGGATAACTTCGAGTGGCAAGATGGTT 1657 Query 1490 ACAAAAACAGATTTGGACTCTACTACGTTGATTTCAAAAATAACCTCACACGTTACGAGA 1549 | ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1658 ATAAAAACAGATTCGGACTCTACTACATTGATTTCAAAAATAACCTCACACGTTACGAGA 1717 Query 1550 AAGAATCCGGCAAGTATTACAAGGATTTCCTCAGTCAAGGTGTTCGTCCATCCGCGCTCA 1609 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| Sbjct 1718 AAGAATCCGGCAAGTATTACAAGGAGTTCCTCAGTCAAGGTGTTCGTCCATCAGCGATCA 1777 Query 1610 AGAAGGATGAGCTTTAAGCTAT-TT-------CTGTTTCAATGTGT-TTT--T--CCTAT 1656 |||||||||||||||||||||| || |||||||||||||| ||| | ||||| Sbjct 1778 AGAAGGATGAGCTTTAAGCTATATTTGGTTTTCTGTTTCAATGTGTCTTTAATTTCCTAT 1837 Query 1657 GTTTTACTTTGTGAGTGACCAAGATTCATGAGGTCTTGGTTCTAATAAAAAGAGTTTATT 1716 ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1838 GTTTTTCTTTGTGATTGACCAAGATTCATGAGGTCTTGGTTATAATAAAA-GAGTTTATT 1896 Query 1717 TTTCTTCTCATTTTTCATTGTCTACATGATTTGCCAGATCTACAAG 1762 || ||| |||||||||| ||||||||||||||||||||| |||||| Sbjct 1897 TT-CTTTTCATTTTTCAATGTCTACATGATTTGCCAGATATACAAG 1941 Score = 327 bits (177), Expect = 1e-88 Identities = 206/219 (94%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 1 AGAACCATCCTAAACATTTTTTCTTGAATAAAATC----AG--AATTACAAACAAAAATG 54 |||||||||||||||||||| ||||||| |||||| || ||||||||||||||||| Sbjct 1 AGAACCATCCTAAACATTTTATCTTGAAGAAAATCAGAAAGTTAATTACAAACAAAAATG 60 Query 55 GTTTTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTCTCCA 114 | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 61 GCTTTGCAAAAGCTTCCTCTCGTTGGGCTGCTTTTGCTCCTAACCATCGTCGCCTCTCCA 120 Query 115 GCAAATGCAGATGGACCTGTTTGCCCGCCGTCGAACAAACTAAGCCGGGCAAGTTTCCCT 174 |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 121 GCAAATGCAGATGGACCTGTTTGCCCGCCGTCGACCAAACTAAGTCGGGCAAGTTTCCCT 180 Query 175 GAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAG 213 ||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAAGGTTTTTTATTTGGCACGGCTACTGCGGCATACCAG 219 > Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1 Length=1756 Score = 1511 bits (818), Expect = 0.0 Identities = 1355/1607 (84%), Gaps = 66/1607 (4%) Strand=Plus/Plus Query 58 TTGCAAAAGCTTCCTCTCATTGGGCTGCTTTTGCTCCTGACCATCGTCGCCTC-TCCAGC 116 ||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| || | | Sbjct 7 TTGCAAAAGTTTCCTCTCATGGGGCTGCTTTTGCTCCTAACCATCGTCGTCTCTTCGA-C 65 Query 117 AAAT-G-C--AGATGGA-CCTGTTTGCCCGCCGT-CGAACAAACTAAGCCGGGCAAGTTT 170 ||| | | ||| || |||||||||||| | | || |||||||||||| |||||||| Sbjct 66 -AATAGCCGTCGAT-GATCCTGTTTGCCCGAC-TACGTCCAAACTAAGCCGAGCAAGTTT 122 Query 171 CCCTGAA-GGTTTTTTATTTGGCACGGCTACTGCGGCATACCAGGTCGAAGGTGCGATTA 229 |||| || |||||||| ||||||||||||||||| || | ||||| |||||||| |||| Sbjct 123 CCCT-AACGGTTTTTTGTTTGGCACGGCTACTGCTGCGTTTCAGGTTGAAGGTGCAATTA 181 Query 230 ATGAAACTTGTCGTGGACCAGCCT-TATGGGACATCTACTGTAGAAGATATCCAGAGAGG 288 |||||||||| |||||||| | || ||||||| |||| ||||| ||| |||||||||| Sbjct 182 ATGAAACTTGCCGTGGACC-GGCTCTATGGGATATCTTTTGTAGGAGAAATCCAGAGAGA 240 Query 289 TGCAATAACGATAACGGCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATC 348 || | | | | |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGTAGTGGCCACAACGCCGATGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATT 300 Query 349 CAACTAATGAAGAATCTAAACACAGACGCCTTTAGAATGTCTATCGCATGGCCAAGAATA 408 ||||||||||||||||||||||||||||| || ||| | || ||| ||||| |||||||| Sbjct 301 CAACTAATGAAGAATCTAAACACAGACGCATTCAGACTCTCAATCTCATGGTCAAGAATA 360 Query 409 TTTCCTCATGGGAGAAAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTCTACCACGAC 468 ||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||| Sbjct 361 TTTCCTCATGGAAGAAAGGAGAAGGGAGTGAGTCAATCTGGTGTGAAATTCTACCACGAT 420 Query 469 CTCATCGACGAGCTCATAAAAAATGGTATAAC-TCCATT-CGTTACTGTTTTTCACTGGG 526 ||||||| |||||| |||||||||| || || ||| || ||| ||||||||||| |||| Sbjct 421 GTCATCGATGAGCTCCTAAAAAATGGCAT-ACTTCC-TTCCGTGACTGTTTTTCATTGGG 478 Query 527 ACACTCCACAAGATTTAGAAGATGAATATGGCGGCTTT-TTAAGCGAAAGGATTGTGAAG 585 |||||||||||||||||||||| ||||||||||| ||| |||||| ||| ||||| || Sbjct 479 ACACTCCACAAGATTTAGAAGACGAATATGGCGG-TTTCTTAAGCCAAAACATTGTAAAA 537 Query 586 GATTTCCGAGAGTATGCAGATTTTGTTTTCCA-AGAATACGGTGGAAAAGTGAAACATTG 644 |||||||| || ||||||||||||||||| || |||||||||||||||||||||| | || Sbjct 538 GATTTCCGGGAATATGCAGATTTTGTTTT-CACAGAATACGGTGGAAAAGTGAAAAACTG 596 Query 645 GATCACTTTCAATGAGCCATGGGTTTTCTCGCACGCTGGCTATGACGTAGGCAAAAAGGC 704 |||||||||||| ||||||||||| ||| | || || || || ||||||||||| ||||| Sbjct 597 GATCACTTTCAACGAGCCATGGGTCTTCGCTCATGCAGGTTACGACGTAGGCAAGAAGGC 656 Query 705 ACCTGGTCGTTGCTCTTC-TTACG-TCAA---TGCTAAATG-CCAAGACGGACGATCAGG 758 ||| || ||||| || || ||||| | || ||| || | || ||| |||||||| || Sbjct 657 ACCAGGACGTTGTTC-TCGTTACGTTAAAGGTTGC-GAA-GACCGAGATGGACGATCCGG 713 Query 759 ATACGAGGCTTACCTTGTCACTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGAAGC 818 || |||||||| || |||| |||||| ||||| | | ||||||||||||| ||||||| Sbjct 714 TTATGAGGCTTATCTAGTCAGTCACAACCTCCTCAACGCTCACGCAGAAGCTGTTGAAGT 773 Query 819 TTACCGGAAATGCGAAAA-GTGTAAAGGTGGGAAGA-TCGGAATTGCACATAGTCCTGCT 876 || || || |||| || ||||||| |||| | || |||| ||||||||||| ||| Sbjct 774 TTTCC------GCCAAAAGGT-TAAAGGTTGGAA-ATTCTGAATGGCACATAGTCCGGCT 825 Query 877 TGGTTCGAAGCACATGACCTTGCTGATTCACAA-GACGGTGCGTCCATCGACCGTGCACT 935 ||||||||| ||||||||||| |||||| || ||| | | | ||| ||||| ||| Sbjct 826 TGGTTCGAACCACATGACCTTAAAGATTCA-AATGACACTCCAACTGTCGGCCGTGTACT 884 Query 936 TGACTTTATTTTGGGATGGCATCTAGACACAACTACATTTGGAGATTATCCACAGATCAT 995 ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||| Sbjct 885 TGACTTTATGTTGGGATGGCATCTAGACCCAACTACTTTTGGAGATTATCCACAAATCAT 944 Query 996 GAAAGACATTGTTGGACATAGATTGCCTAAATTTAC-AACTGAGCAGAAAGCAAAACTGA 1054 ||||||| || |||| || ||||||||||||||||| || || ||| ||||||||| ||| Sbjct 945 GAAAGACCTTCTTGGCCACAGATTGCCTAAATTTACGAA-TGCGCAAAAAGCAAAATTGA 1003 Query 1055 AAGCTTCTACCGATTTCGTTGGGCTCAACTACTATACTTCAGTGTTTTCAAACCAT-TTG 1113 ||| ||| ||||||||||| || || ||||||||||||||| |||||||||||| | Sbjct 1004 AAGATTCGACCGATTTCGTAGGACTTAACTACTATACTTCAACATTTTCAAACCATAAT- 1062 Query 1114 GAGAAACCTGATCCTTCAAAACCAAGATGGATGCAAGATTCTCTTATTACATGGGAGTCT 1173 ||||| || ||||| || | |||||| |||| ||||||||||||| || | ||||| || Sbjct 1063 GAGAAGCCAGATCCGTCTACACCAAGTTGGAAGCAAGATTCTCTTGTTGCCTGGGAACCT 1122 Query 1174 AAGAATG-CGCAAAATTA-CGCCATTGGTAG-CAAGCCT-TTGACCGCTGCATTGAACGT 1229 ||||||| || | | | |||||||||||| | ||||| || || ||||| ||| ||| Sbjct 1123 AAGAATGTCG-ACCA-CAGCGCCATTGGTAGTC-AGCCTCTT-ACTGCTGCGTTGCCCGT 1178 Query 1230 TTACTCGAGAGGTTTTAGAAGTCTGTTGAAGTACATTAAGGACAAATACGCAAATCCGGA 1289 ||| | | ||||||||||||||| || |||||||| ||||| ||||||||||| || || Sbjct 1179 CTACGCTAAAGGTTTTAGAAGTCTTTTAAAGTACATCAAGGATAAATACGCAAACCCCGA 1238 Query 1290 AATTATGATCATGGAAAACGGATATGGAGA-AGAACTAGGGGCCTCAGATTCTGTTGCTG 1348 |||||||||||||||||| ||||||||||| | ||||| ||| | |||||| |||| | Sbjct 1239 AATTATGATCATGGAAAATGGATATGGAGATA-AACTAAGGGACAAAGATTCGGTTGAGG 1297 Query 1349 TTGGTACCGCTGATCATAACAGGAAATATTATCTTCAGAGGCATCTTTTGAG-TATGCAA 1407 ||||||| ||||||||||||||||||||||||||||||||||||||| || | |||| || Sbjct 1298 TTGGTACTGCTGATCATAACAGGAAATATTATCTTCAGAGGCATCTTCTG-GCTATG-AA 1355 Query 1408 -GAAGCTGTTTGCATCGACAAAGTGA-ATGTTACAGGATACTTTGTATGGTCATTGTTGG 1465 || ||| ||||||||||||| |||| | ||||| ||||||||||||||||||||||||| Sbjct 1356 CGAGGCTATTTGCATCGACAAGGTGAGA-GTTACGGGATACTTTGTATGGTCATTGTTGG 1414 Query 1466 ATAACTTCGAGTGGCAAGATGGTTACAAAAACAGATTTGGACTCTACTACGTTGATTTCA 1525 ||||||| || |||||||||||||| || || ||||| |||||||| ||||| ||||||| Sbjct 1415 ATAACTTTGAATGGCAAGATGGTTATAATAATAGATTCGGACTCTATTACGTCGATTTCA 1474 Query 1526 AAAATAACCTCACACGTTACGAGAAAGAATCCGGCAAGTATTACAAGGATTTCCTCAG-T 1584 ||||||||||||||||||| ||||||||||| | |||||||||||| |||||||| || | Sbjct 1475 AAAATAACCTCACACGTTATGAGAAAGAATCAGCCAAGTATTACAAAGATTTCCT-AGCT 1533 Query 1585 CAAGGTGTTCGTCCATCCGCGCTCAAGAAGGATGAGCTTTAAGCTAT 1631 ||||||||||||||||||||| |||||| |||||||||||||| ||| Sbjct 1534 CAAGGTGTTCGTCCATCCGCGATCAAGAGGGATGAGCTTTAAGTTAT 1580 > Ahg952424 jgi|Araly1|952424|scaffold_7000006.1 Length=609 Score = 303 bits (164), Expect = 2e-81 Identities = 435/560 (78%), Gaps = 42/560 (8%) Strand=Plus/Plus Query 416 ATGGGAGAAAGGAGAAAGGAGTGAGTC-AAGCTGGTGTGCAATTCTACCACGACCTCATC 474 ||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| Sbjct 47 ATGGGAGAAAGGAGAAAGGAGTGAG-CAAAGCTGGTGTCCAATTCTACCACGACCTCATC 105 Query 475 GACGAGCTCATAAAAAATGG-TATAACTCCA-TTCGTTACTGTTTTTCACTGGGACACTC 532 |||||||| || ||||| || | | | ||| || || ||||| || ||||||||||| | Sbjct 106 GACGAGCTTATCAAAAA-GGATCTTATTCCTCTT-GTGACTGTCTTCCACTGGGACAC-C 162 Query 533 CACAAG--ATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTT 590 | |||| |||||||||| ||||| || ||||| ||||| ||| ||||| |||||||| Sbjct 163 C-CAAGTGATTTAGAAGACGAATACGGTGGCTTCCTAAGCCAAAATATTGTAAAGGATTT 221 Query 591 CC-GAGAGTATGCAGATTTTGTTTTCCAA-GAATACGGTGGA-AAAGTGAAACATTGGAT 647 | | || || ||||| ||||| ||| || |||| |||| | ||||| ||| ||||| | Sbjct 222 CATG-GAATACGCAGAATTTGTGTTC-AACGAATTTGGTG-ACAAAGTAAAAAATTGGGT 278 Query 648 CACTTTCAATGAGCCATGGGT-TTTC-TCGCACGCTGGCTATGACGTAGGCAAA-AAGGC 704 ||||||||||||||||||||| ||| ||| | | || || || | ||| ||| || || Sbjct 279 CACTTTCAATGAGCCATGGGTCTTTAGTCGTGC-C-GGTTACGATG-AGGGAAAGAAAGC 335 Query 705 ACCTGGTCGTTGCTCTTCTTACGTCAATGCTAAAT--GCCAAGACGGACGATCAGGATAC 762 ||| || ||||||||| ||| |||| || | | |||| |||||||||||||| Sbjct 336 ACCAGGACGTTGCTCTAAGTACCAAAATG--AATTCTGTGAAGATGGACGATCAGGATAT 393 Query 763 GAGGCTTACCTTGTCA-CTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGA-AGCTT 820 || |||||||| || | | || || || ||||| ||||| || ||||| ||| | | || Sbjct 394 GAAGCTTACCTCGTTAGC-CATAACCTACTTATATCTCATGCCGAAGCTGTTTATATTTT 452 Query 821 ACCGGAAATGCGAAA-AGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGG 879 | | |||| ||| | ||||||||||||||||||||||| ||||| || |||||| Sbjct 453 -CAG-AAAT---AAATACAA-AAAGGTGGGAAGATCGGAATTGCGCATAGCCCGGCTTGG 506 Query 880 TTCGAAGC-ACATG-ACC-TTGC--TGATTCACAAGACGGTGCGTCCATCGACCGTGCAC 934 ||||| || ||||| | || ||| ||||||| ||||| ||||| || ||| ||| Sbjct 507 TTCGA-GCCACATGCATGATTTTAATGACGCACAAGATGGTGCATCCATTGAACGTTCAC 565 Query 935 TTGACTTTATTTTGGGATGG 954 |||||||||| |||||||| Sbjct 566 TTGACTTTATGATGGGATGG 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67800636100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5