BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09270.1

Length=856
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903793 jgi|Araly1|903793|Al_scaffold_0003_921                    1114    0.0  


> Ahg903793 jgi|Araly1|903793|Al_scaffold_0003_921
Length=675

 Score = 1114 bits (603),  Expect = 0.0
 Identities = 652/676 (96%), Gaps = 2/676 (0%)
 Strand=Plus/Plus

Query  64   ATGAACCAAGAAGAGCACGTAAAGCTTCTGGGCTTATGGGGAAGTCCTTTTAGCAAAAGA  123
            ||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||
Sbjct  1    ATGAACCAAGAAGAGCAAGTAAAGCTTATGGGATTATGGGGAAGTCCTTTTAGTAAAAGA  60

Query  124  GTAGAGATGGTCCTAAAACTTAAGGGCATACCTTATGAGTACATTGAAGAAGATGTTTAT  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTAGAGATGGTCCTAAAACTTAAGGGCATACCTTATGAGTACATTGAAGAAGATGTTTAT  120

Query  184  GGAAACAGGAGCCCTATGCTTCTCAAGTACAACCCTATACACAAGAAGGTCCCTGTCCTC  243
            || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  GGTAACAAGAGCCCTATGCTTCTCAAGTACAACCCTATTCACAAGAAGGTCCCTGTCCTC  180

Query  244  ATCCACAATGGTAGATCGATAGCCGAATCAT-TGGTGATTGTCGAATACATCGAAGATAC  302
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  181  ATCCACAATGGTAGATCGATAGCCGAATC-TATGGTGATTGTCGAATACATCGAAGATAC  239

Query  303  GTGGAAGACAACTCACACGATCTTGCCTCAAGATCCTTATGAACGTGCCATGGCCCGGTT  362
            ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  240  GTGGAAGACAAGTCACAAGATCTTGCCTCAAGATCCTTATGAACGCGCCATGGCCCGTTT  299

Query  363  TTGGGCTAAGTATGTGGATGAAAAGGTAATGTTAGCAGTGAAGAAAGCTTGTTGGGGACC  422
            ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct  300  TTGGGCTAAGTATGTGGATGATAAGGTAATGTTAGCAGTGAAGAAGGCATGTTGGGGACC  359

Query  423  GGAGAGTGAAAGAGAAAAAGAAGTGAAAGAGGCTTATGAGGGTTTGAAATGTTTAGAAAA  482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GGAGAGTGAAAGAGAAAAAGAAGTGAAAGAGGCTTATGAGGGTTTGAAATGTTTAGAAAA  419

Query  483  GGAGCTTGGAGATAAACtttttttCGGAGGAGAGACAATTGGATTTGTCGATATAGCAGC  542
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  420  AGAGCTTGGAGATAAACTTTTTTTCGGAGGAGACACAATTGGATTTGTCGATATAGCGGC  479

Query  543  TGATTTCATAGGATATTGGTTAGGGATTTTCCAAGAAGCTTCAGGCGTCACGATCATGAC  602
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  480  TGATTTCATAGGATATTGGTTAGGGATCTTCCAAGAAGCTTCAGGCGTCACGATCATGAC  539

Query  603  CGCGGAGGAGTTTCCAAAACTTCAACGTTGGTCGGAAGATTTCGTGGGAAATAACTTTAT  662
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct  540  CGCGGAGGAGTTTCCAACACTTCAACGTTGGTCGGAAGATTTCGTGGGAAATAATTTTAT  599

Query  663  TAAGGAAGTCTTGCCCCCTAAGGAGAAGCTCGTGGCTGTTTTGAAGGCCATGTTTGGAAG  722
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  600  TAAGGAAGTTTTGCCGCCTAAGGAGAAGCTCGTGGCTGTTTTGAAGGCCATGTTTGGAAG  659

Query  723  TGTTACATCTAATTAA  738
            ||||||||||||||||
Sbjct  660  TGTTACATCTAATTAA  675



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31680144027


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5