BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09280.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928594 jgi|Araly1|928594|scaffold_301051.1 510 2e-144
Ahg497230 jgi|Araly1|497230|fgenesh2_kg.70__2__AT3G09280.1 484 1e-136
> Ahg928594 jgi|Araly1|928594|scaffold_301051.1
Length=383
Score = 510 bits (276), Expect = 2e-144
Identities = 320/341 (94%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 1 ATGGATGCGAAACATATAGTTCTATGCTTCTTGCTAACGTACGT-CTTCTCCATGGCGGC 59
||||||| ||||| |||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 23 ATGGATGTGAAACTTATAGTTCTATGCTTCTTGCTAACGTAC-TCCTTGTCCATGGCGGC 81
Query 60 AGCCTCATCGGAAGCTGAGCCTCCGGCAACAAGGAAACTCGGCAGGCACGAATGGCCAGG 119
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 82 AGCCTCATCGGAAGCTGAGCCTCCAACAACAAGGAAACTCGGCAGGCACGATTGGCCAGG 141
Query 120 AGAGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCACCA 179
|| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 142 AGCGGAGGCAGAAGCACCAGAAGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCATCA 201
Query 180 CCATTCCACGGTGGAAAGATCGGTTGCCGGAGGTGGAGTTATTCTCGGAGGCTTAGCTAC 239
| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 202 CGATTCCACGGTGGAAAGATCGGTCGCCGGCGGTGGAGTTATTCTCGGAGGCTTAGCGAC 261
Query 240 -AACGTTTCTTGTGGTAGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATT 298
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TAA-GTTTCTTGTGGTGGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATT 320
Query 299 ATGATGAAAAGGAGACTGAGACCCCTAAAGTGTTAGTTTAA 339
|||||||||||||||||||||| ||||| ||||||||||||
Sbjct 321 ATGATGAAAAGGAGACTGAGACGCCTAAGGTGTTAGTTTAA 361
> Ahg497230 jgi|Araly1|497230|fgenesh2_kg.70__2__AT3G09280.1
Length=337
Score = 484 bits (262), Expect = 1e-136
Identities = 313/338 (93%), Gaps = 2/338 (1%)
Strand=Plus/Plus
Query 1 ATGGATGCGAAACATATAGTTCTATGCTTCTTGCTAACGTACGT-CTTCTCCATGGCGGC 59
|||||| | |||| |||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1 ATGGATACAAAACTTATAGTTCTATGCTTCTTGCTAACGTAC-TCCTTGACCATGGCGGC 59
Query 60 AGCCTCATCGGAAGCTGAGCCTCCGGCAACAAGGAAACTCGGCAGGCACGAATGGCCAGG 119
|| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct 60 AGTCTCATCGGAAGCTGAGCCTCCAACAACAAGGAAATTCGGCAGGCACGATTGGCCAGA 119
Query 120 AGAGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTACGGCGAGGCCACCA 179
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 120 AGCGGAGGCAGAAGCACCGGAGGTTTCACATTTGGAAGAGACTGTAGGGCGAGGCAACCA 179
Query 180 CCATTCCACGGTGGAAAGATCGGTTGCCGGAGGTGGAGTTATTCTCGGAGGCTTAGCTAC 239
| |||||||||||||||||||||| || || |||||||||||||| ||||||||||| ||
Sbjct 180 CGATTCCACGGTGGAAAGATCGGTCGCAGGCGGTGGAGTTATTCTTGGAGGCTTAGCGAC 239
Query 240 AACGTTTCTTGTGGTAGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATTA 299
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACGTTTCTTGTGGTGGTGTTTTGCTATATAAGGGCTACGAGGAAACACAAACCCAATTA 299
Query 300 TGATGAAAAGGAGACTGAGACCCCTAAAGTGTTAGTTT 337
||||||||||||||||||||||||||| ||||||||||
Sbjct 300 TGATGAAAAGGAGACTGAGACCCCTAAGGTGTTAGTTT 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12019010535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5