BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09290.1
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952419 jgi|Araly1|952419|scaffold_7000001.1 785 0.0
Ahg928595 jgi|Araly1|928595|scaffold_301052.1 785 0.0
> Ahg952419 jgi|Araly1|952419|scaffold_7000001.1
Length=565
Score = 785 bits (425), Expect = 0.0
Identities = 495/527 (94%), Gaps = 12/527 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 80
Query 61 AGTCATCAAGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGTCATCAGGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 140
Query 121 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 200
Query 181 AGGGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTCGTCGCCGAGAGT 240
|| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 201 AGAGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTTGTTGCTGAGAGT 260
Query 241 GATGCATCCGAAGTTGTGTCTCTAGACCTTAATGaacaacaacaacaacaaGGAGAAGCT 300
||| |||| |||||||| |||||||||||||||||||||||||||||||||| | | |||
Sbjct 261 GATTCATCAGAAGTTGTCTCTCTAGACCTTAATGAACAACAACAACAACAAG-A-A-GCT 317
Query 301 TTGACATGTGATGATCACGAT---CAA--T-A-T--GTTGATAACGATATAAGTCCTAAA 351
||||||||||||||||||||| ||| | | | ||||| || ||| |||||||||||
Sbjct 318 TTGACATGTGATGATCACGATGATCAAGATCAATATGTTGAGAAAGATTTAAGTCCTAAA 377
Query 352 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCATGGAAAGGTC 411
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 378 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCGTGGAAAGGGC 437
Query 412 ACGGAGGCTAGCATAGATGGTTCGAGTTCGAGTCATCATCGTGATATTGAAGTATTGGAT 471
||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 438 ACGGAGGTTAGCATAGATGGTTCGAGTTCGAGACATCATCGTGAGATTGAAGGATTGGAT 497
Query 472 CTCGAGCTTCGGTTAGGCCAAAGCGTCGTAAAGAAGAAGACAACATA 518
|| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 498 CTGGAGCTTCGGTTAGGCCAAAGCGTCGTGGAGAAGAAGACAACATA 544
> Ahg928595 jgi|Araly1|928595|scaffold_301052.1
Length=565
Score = 785 bits (425), Expect = 0.0
Identities = 495/527 (94%), Gaps = 12/527 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 80
Query 61 AGTCATCAAGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGTCATCAGGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 140
Query 121 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 200
Query 181 AGGGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTCGTCGCCGAGAGT 240
|| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 201 AGAGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTTGTTGCTGAGAGT 260
Query 241 GATGCATCCGAAGTTGTGTCTCTAGACCTTAATGaacaacaacaacaacaaGGAGAAGCT 300
||| |||| |||||||| |||||||||||||||||||||||||||||||||| | | |||
Sbjct 261 GATTCATCAGAAGTTGTCTCTCTAGACCTTAATGAACAACAACAACAACAAG-A-A-GCT 317
Query 301 TTGACATGTGATGATCACGAT---CAA--T-A-T--GTTGATAACGATATAAGTCCTAAA 351
||||||||||||||||||||| ||| | | | ||||| || ||| |||||||||||
Sbjct 318 TTGACATGTGATGATCACGATGATCAAGATCAATATGTTGAGAAAGATTTAAGTCCTAAA 377
Query 352 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCATGGAAAGGTC 411
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 378 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCGTGGAAAGGGC 437
Query 412 ACGGAGGCTAGCATAGATGGTTCGAGTTCGAGTCATCATCGTGATATTGAAGTATTGGAT 471
||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 438 ACGGAGGTTAGCATAGATGGTTCGAGTTCGAGACATCATCGTGAGATTGAAGGATTGGAT 497
Query 472 CTCGAGCTTCGGTTAGGCCAAAGCGTCGTAAAGAAGAAGACAACATA 518
|| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 498 CTGGAGCTTCGGTTAGGCCAAAGCGTCGTGGAGAAGAAGACAACATA 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18887016555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5