BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09290.1 Length=519 Score E Sequences producing significant alignments: (Bits) Value Ahg952419 jgi|Araly1|952419|scaffold_7000001.1 785 0.0 Ahg928595 jgi|Araly1|928595|scaffold_301052.1 785 0.0 > Ahg952419 jgi|Araly1|952419|scaffold_7000001.1 Length=565 Score = 785 bits (425), Expect = 0.0 Identities = 495/527 (94%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 1 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 80 Query 61 AGTCATCAAGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 AGTCATCAGGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 140 Query 121 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 200 Query 181 AGGGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTCGTCGCCGAGAGT 240 || |||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 201 AGAGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTTGTTGCTGAGAGT 260 Query 241 GATGCATCCGAAGTTGTGTCTCTAGACCTTAATGaacaacaacaacaacaaGGAGAAGCT 300 ||| |||| |||||||| |||||||||||||||||||||||||||||||||| | | ||| Sbjct 261 GATTCATCAGAAGTTGTCTCTCTAGACCTTAATGAACAACAACAACAACAAG-A-A-GCT 317 Query 301 TTGACATGTGATGATCACGAT---CAA--T-A-T--GTTGATAACGATATAAGTCCTAAA 351 ||||||||||||||||||||| ||| | | | ||||| || ||| ||||||||||| Sbjct 318 TTGACATGTGATGATCACGATGATCAAGATCAATATGTTGAGAAAGATTTAAGTCCTAAA 377 Query 352 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCATGGAAAGGTC 411 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 378 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCGTGGAAAGGGC 437 Query 412 ACGGAGGCTAGCATAGATGGTTCGAGTTCGAGTCATCATCGTGATATTGAAGTATTGGAT 471 ||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||| Sbjct 438 ACGGAGGTTAGCATAGATGGTTCGAGTTCGAGACATCATCGTGAGATTGAAGGATTGGAT 497 Query 472 CTCGAGCTTCGGTTAGGCCAAAGCGTCGTAAAGAAGAAGACAACATA 518 || |||||||||||||||||||||||||| |||||||||||||||| Sbjct 498 CTGGAGCTTCGGTTAGGCCAAAGCGTCGTGGAGAAGAAGACAACATA 544 > Ahg928595 jgi|Araly1|928595|scaffold_301052.1 Length=565 Score = 785 bits (425), Expect = 0.0 Identities = 495/527 (94%), Gaps = 12/527 (2%) Strand=Plus/Plus Query 1 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGGAAAACATCAAAAACCCTAAAAACGCAGATGATTGTTCCGATAGCATATCAAAAAAC 80 Query 61 AGTCATCAAGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 AGTCATCAGGGCGTTGATGATTCCCTGAACCAGTCAAGATCTTACGTATGCAGTTTCTGC 140 Query 121 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 ATAAGGGGCTTCTCGAATGCTCAAGCACTAGGAGGGCATATGAACATCCACAGAAGAGAC 200 Query 181 AGGGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTCGTCGCCGAGAGT 240 || |||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 201 AGAGCTAAACTCAGACAAAAGCTTATGGAAGATAATAAGGATGATGTTGTTGCTGAGAGT 260 Query 241 GATGCATCCGAAGTTGTGTCTCTAGACCTTAATGaacaacaacaacaacaaGGAGAAGCT 300 ||| |||| |||||||| |||||||||||||||||||||||||||||||||| | | ||| Sbjct 261 GATTCATCAGAAGTTGTCTCTCTAGACCTTAATGAACAACAACAACAACAAG-A-A-GCT 317 Query 301 TTGACATGTGATGATCACGAT---CAA--T-A-T--GTTGATAACGATATAAGTCCTAAA 351 ||||||||||||||||||||| ||| | | | ||||| || ||| ||||||||||| Sbjct 318 TTGACATGTGATGATCACGATGATCAAGATCAATATGTTGAGAAAGATTTAAGTCCTAAA 377 Query 352 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCATGGAAAGGTC 411 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 378 CAGAAATTAGAGTTTTGGGTTCAAGAAAGCAAGCTTGATACTAATGATCGTGGAAAGGGC 437 Query 412 ACGGAGGCTAGCATAGATGGTTCGAGTTCGAGTCATCATCGTGATATTGAAGTATTGGAT 471 ||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||| Sbjct 438 ACGGAGGTTAGCATAGATGGTTCGAGTTCGAGACATCATCGTGAGATTGAAGGATTGGAT 497 Query 472 CTCGAGCTTCGGTTAGGCCAAAGCGTCGTAAAGAAGAAGACAACATA 518 || |||||||||||||||||||||||||| |||||||||||||||| Sbjct 498 CTGGAGCTTCGGTTAGGCCAAAGCGTCGTGGAGAAGAAGACAACATA 544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18887016555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5