BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09300.1
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478245 jgi|Araly1|478245|fgenesh2_kg.3__946__AT3G09300.1 2676 0.0
Ahg324883 jgi|Araly1|324883|fgenesh1_pm.C_scaffold_6000103 1328 0.0
Ahg340891 jgi|Araly1|340891|fgenesh1_pg.C_scaffold_3000654 409 4e-113
> Ahg478245 jgi|Araly1|478245|fgenesh2_kg.3__946__AT3G09300.1
Length=1721
Score = 2676 bits (1449), Expect = 0.0
Identities = 1554/1603 (97%), Gaps = 14/1603 (1%)
Strand=Plus/Plus
Query 1 AAACAAGTGACAACGAAGACC-AGCAGGTCCAGCACACGATCCTAAATCCTGTGAGCATC 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAACAAGTGACAACGAAGACCAAGCAGGTCCAGCACACGATCCTAAATCCTGT--GCATC 58
Query 60 GTCTCCATCGCTGGTCTTCCATTATTGACGAATCTCTTTGCCtttttttCTTCCTTCTTA 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 59 GTCTCCATCGCTGGTCTTCCATTATTGACGAATCTCTTTG-CTTTTTTTCTTCCTTCTTA 117
Query 120 AACAAACCCAATTCGATTTCAACGAACGCCTCTTCTCTCTCACTCTCTTT--CGATTTGT 177
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 AACAAACCCAATTCGATTTCAACGAACGCCTCTTCTCTCTCACTCTCTTTCCCGATTTGT 177
Query 178 TC-TTTGCCGGAGCTCGTAGTGTAAGCGTGATCCGCGGCGGAGAGATGGCTCCTAATGAT 236
|| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 178 TCATTTGCCGGAGCTCGTAGTGTAAGCG-GATCCGCGGCTGAGAGATGGCTCCTAATGAT 236
Query 237 CCTAAAAAAGCCGTTGGTGGCGGCGGAAGTGGTTTCTTCGCCTCTCTTGCTTCGTCGATC 296
|||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 237 CCTAAAAAAGCC---GGT---GGCGGAAGTGGTTTCTTCGCTTCTCTTGCTTCTTCGATC 290
Query 297 TCCAATTTGGGATCTGCTATGACCAAATCAGTTAATGGTTTGGTTCCCTATGAGGGACTT 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 291 TCCAATTTGGGATCTGCTATGACCAAATCAGTTAATGGTTTGGTTCCCTATGAGGGGCTT 350
Query 357 GAAGTTATCAATCCTGAAGGAAGTACAGATGATGCTGAGGAGGAAGCAAGCAGAGGAAGA 416
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 351 GAAGTTATCAATCCCGAAGGAAGTACAGATGATGCAGAGGAGGAAGCAAGCAGAGGAAGA 410
Query 417 TGGAAGCAAGAGGATCGAGATGGCTATTGGAAGATGATGCAGAAGTACATAGGATCTGAT 476
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGAAGCAAGAGGATCGAGATGGGTATTGGAAGATGATGCAGAAGTACATAGGATCTGAT 470
Query 477 GTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTTCAGAAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 471 GTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTCCAGAAA 530
Query 537 ATGGCGGAGTTGATGGAATACTCGCATCTGCTAGACATGGCAGACAAAACCGAGGACCCT 596
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 531 ATGGCAGAGTTGATGGAATACTCGCATCTCCTAGACATGGCAGACAAAACTGAGGACCCT 590
Query 597 TATTTGCGCATGGTGTATGCATCATCGTGGGCTATATCCGTGTATTATGCTTTCCAACGT 656
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 591 TATATGCGCATGGTGTATGCATCATCATGGGCTATATCCGTGTATTATGCTTTCCAACGT 650
Query 657 ACCTGGAAACCATTCAATCCAATCCTTGGTGAGACTTATGAGATGGCTAATTACAATGGT 716
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 651 ACCTGGAAACCATTCAATCCAATCCTCGGTGAGACTTATGAGATGGCTAATTACAATGGT 710
Query 717 GTTAACTTCATATCTGAACAGGTCAGCCATCACCCACCAATGAGTGCTGGTCATGCTGAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTTAACTTCATATCTGAACAGGTCAGCCATCACCCACCAATGAGTGCTGGTCATGCTGAA 770
Query 777 AATGAGCATTTTACGTATGATTGTACTTCAAAACTGAAAACAAAATTTTTGGGCAATTCC 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 771 AATGAGCATTTTACGTATGATTGTACTTCAAAACTGAAAACAAAATTTCTGGGAAATTCC 830
Query 837 ATTGACGTTTACCCAGTAGGAAGGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ATTGACGTTTACCCAGTAGGAAGGACACGGGTGACACTTAAAAGAGATGGAGTTGTTCTT 890
Query 897 GACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GACTTGGTACCTCCTCTGACCAAAGTTCACAACCTAATCTTTGGACGAACTTGGGTCGAT 950
Query 957 TCGCCTGGGGAAATGATCATGACAAATCAGACCACCGGTGACAAAGTCGTGCTTTACTTT 1016
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 951 TCGCCTGGGGAAATGATCATGACAAACCTGACCACCGGTGACAAAGTTGTGCTTTACTTT 1010
Query 1017 CAACCATGTGGCTGGTTCGGATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CAACCATGTGGCTGGTTCGGATCTGGTCGATATGAAGTGGATGGATATGTCTATAACGCC 1070
Query 1077 TCTGAGGAGCCTAAGATACTCATGACTGGCAAATGGAACGAGTCCATGAGTTATCAGCCG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCTGAGGAGCCTAAGATACTCATGACTGGCAAATGGAACGAGTCCATGAGTTATCAGCCG 1130
Query 1137 TGTGATGGTGAAGGTGAACCTCTCCCAGGCACCGAACTGAAAGAGGTATGGAAACTCGCT 1196
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGTGACGGTGAAGGTGAACCTCTCCCAGGCACCGAACTGAAAGAGGTATGGAAACTCGCT 1190
Query 1197 GATGTGCCAAAGGATGACAAATATCAATACACTCACTTTGCTCACAAGATTAATAGCTTC 1256
||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct 1191 GATGTTCCAAAGGATGACAAATACCAATACACACACTTTGCTCACAAGATCAATAGTTTC 1250
Query 1257 GACACTGCCCCGAAAAAGCTGTTGCCCTCTGATTCACGGTTACGACCTGATAGATACGCA 1316
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1251 GACACTGCCCCGAAAAAGCTGTTGCCGTCTGATTCACGGTTACGACCTGATAGATACGCA 1310
Query 1317 CTTGAGATGGGCGACATGTCCAAATCAGGCTATgagaagagcagcatggaagagagacag 1376
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1311 CTTGAGATGGGCGACATGTCCAAATCAGGCAATGAGAAAAGCAGCATGGAAGAGAGACAG 1370
Query 1377 agagctgaaaagagaacccgcgaagagaaagGCCAAGCCTTTACTCCAAAATGGTTCGAT 1436
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1371 AGAGCTGAAAAGAGAACCCGCGAAGAGAAAGGCCAAGGCTTTACTCCTAAATGGTTCGAT 1430
Query 1437 GTAACGGAAGAAGTCACTGCTACACCATGGGGTGATCTGGAAGTTTACCAATTCAATGGA 1496
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1431 GTAACGGAAGAAGTCACTGCTACACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGA 1490
Query 1497 AAGTACTCGGAACATCGTGCAGCTGCGGATAACTCTGAAGATAACACCGACCCTAAGTCG 1556
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1491 AAGTACTCGGAGCATCGTGCAGCTGCCGATAACTCTGAAGATAACACTGACCCTAAGTCG 1550
Query 1557 ATCCAATTCAACCCATGGCAATTCCAAGATCTGTCTACTTAAA 1599
||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1551 ATCCAATTCAACCCATGGCAATTTCAAGATCTGTCTACTTAAA 1593
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1776 TTCGTCGTCATAGTTATCTTCTTCTTCTT 1804
|||||||||||||||||||||||||||||
Sbjct 1693 TTCGTCGTCATAGTTATCTTCTTCTTCTT 1721
> Ahg324883 jgi|Araly1|324883|fgenesh1_pm.C_scaffold_6000103
Length=1362
Score = 1328 bits (719), Expect = 0.0
Identities = 1141/1345 (85%), Gaps = 28/1345 (2%)
Strand=Plus/Plus
Query 267 GGTTTCTTCGCCTCTCTTGCTTCGTCGATCTCCAATTTGGGATCTGCTATGACCAAATCA 326
||||||||||||||||||||||| || ||| ||||||| ||||| || |||| |||||||
Sbjct 31 GGTTTCTTCGCCTCTCTTGCTTCATCCATCACCAATTTCGGATCGGCCATGAGCAAATCA 90
Query 327 GTTAATGGTTTGGTTCCCTATG-AGGGACTTGAAGTTATCAATCCTGAAGGAAGTACAGA 385
|| || |||||| | |||| |||| |||||||| || ||||| || ||| |||||||
Sbjct 91 GTGAACGGTTTGATGGGTTATGAAGGG-CTTGAAGTGATTAATCCAGAGGGAGGTACAGA 149
Query 386 TGATGCTGAGGAGGAAGCAAGCAGAGGAAGATGGAAGCAAGAGGATCGAGATGGCTATTG 445
||||| |||||||||||| | ||||||||||||||||||||||| || ||||| || ||
Sbjct 150 AGATGCAGAGGAGGAAGCAGGAAGAGGAAGATGGAAGCAAGAGGAACGTGATGGTTACTG 209
Query 446 GAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGAT 505
|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 210 GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTGACTCTTCCTGTGAT 269
Query 506 TATTTTTGAACCAATGACAATGCTTCAGAAAATGGCGGAGTTGATGGAATACTCGCATCT 565
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 270 TATTTTTGAACCCATGACAATGCTGCAGAAAATGGCTGAGTTGATGGAATACTCGCATCT 329
Query 566 GCTAGACATGGCAGACAAAACCGAGGACCCTTATTTGCGCATGGTGTATGCATCATCGTG 625
|||||||||||| |||||||| || || ||||| |||| ||||| ||||||||||| ||
Sbjct 330 GCTAGACATGGCTGACAAAACTGAAGATCCTTACATGCGTATGGTATATGCATCATCATG 389
Query 626 GGCTATATCCGTGTATTATGCTTTCCAACGTACCTGGAAACCATTCAATCCAATCCTTGG 685
||||||||| ||||| ||||||| ||| ||||||||||| || ||||||||||| || ||
Sbjct 390 GGCTATATCGGTGTACTATGCTTACCAGCGTACCTGGAAGCCGTTCAATCCAATTCTCGG 449
Query 686 TGAGACTTATGAGATGGCTAATTACAATGGTGTT-AACTTCATATCTGAACAGGTCAGCC 744
||||||||| |||||| ||||| | ||||| | | || || ||| |||||||||| |||
Sbjct 450 TGAGACTTACGAGATGACTAATCATAATGG-GATCAATTTTATAGCTGAACAGGTTTGCC 508
Query 745 ATCACCCACCAATGAGTGCTGGTCATGCTGAAAATGAGCATTTTACGTATGATTGTACTT 804
||||||||||||||||||||||||| || ||||| |||||||| | || ||||| ||||
Sbjct 509 ATCACCCACCAATGAGTGCTGGTCACGCAGAAAACGAGCATTTCGCTTACGATTGCACTT 568
Query 805 CAAAACTGAAAACAAAATTTTTGGGCAATTCCATTGACGTTTACCCAGTAGGAAGGACAC 864
||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||| |
Sbjct 569 CAAAACTGAAAACGAAATTCTTGGGCAACTCAATTGACGTCTACCCAGTAGGAAGGACCC 628
Query 865 GGGTGACACTTAAAAGAGATGGAGTTGTTCTTGA-CTTGGTACCTCCTCTGACCAAAG-T 922
| |||||||||||||||||||| || |||||||| |||| ||||||| ||||| |||| |
Sbjct 629 GAGTGACACTTAAAAGAGATGGTGTGGTTCTTGATCTTG-TACCTCCCCTGAC-AAAGGT 686
Query 923 TCACAACCTAATCTTTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAA 982
||| ||||| |||||||| ||||| ||||| |||||||| || || ||| ||||||| ||
Sbjct 687 TCATAACCTTATCTTTGGTCGAACATGGGTAGATTCGCCAGGAGAGATGGTCATGACGAA 746
Query 983 TCAGACCACCGGTGACAAAGTCGTGCTTTACTTTCAACCATGTGGCTGGTTCGGATCTGG 1042
| |||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 747 CCTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGCGGCTGGTTTGGATCTGG 806
Query 1043 TCGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCCTAAGATACTCATGAC 1102
|| ||||||||||| || || || ||||| | |||| ||||| ||||| || |||||
Sbjct 807 ACGTTATGAAGTGGACGGTTACGTGTATAATTCAGCTGAAGAGCCCAAGATGCTAATGAC 866
Query 1103 TGGCAAATGGAACGAGTCCATGAGTTATCAGCCGTGTGATGGTG-AAGGTGAACCTCTCC 1161
|| ||||||||||||||| ||||||||||||| ||||||| || |||| |||||||| |
Sbjct 867 CGGTAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATG-TGGAAGGCGAACCTCTTC 925
Query 1162 CAGGCACCGAACTGAAAGAGGTATGGAAACTCGCTGATG-TGCCAAAGGATGACAAATAT 1220
|||||||||||||||| ||||||||||| |||| || | | |||||| | || |||| |
Sbjct 926 CAGGCACCGAACTGAAGGAGGTATGGAAGGTCGCGGAAGCT-CCAAAGAACGATAAAT-T 983
Query 1221 C-AATACACTCACTTT-GCTCACAAGATTAATAGCTTCGACACTGCCCCGAAAAAGCTGT 1278
| ||||||| || ||| ||||||||||| ||||| || |||||||| || ||||| ||
Sbjct 984 CCAATACACACA-TTTCGCTCACAAGATCAATAGTTTTGACACTGCTCCTAAAAATCTAC 1042
Query 1279 TGCCCTCTGATTCACGGT-TACGACCTGATAGATACGCACTTGAGATGGGCGACATGTCC 1337
|| | |||||||| || | |||| || ||||||||||| ||||||||||| || ||||||
Sbjct 1043 TGTCATCTGATTCTCG-TCTACGTCCAGATAGATACGCGCTTGAGATGGGTGATATGTCC 1101
Query 1338 AAATCAGGCTATgagaagagcagcatggaagagagacagagagctgaaaagagaacccgc 1397
||||| || | ||| ||||||||| | || || ||||| |||||||| ||||||| |||
Sbjct 1102 AAATCTGGATTTGAAAAGAGCAGCCTAGAGGATAGACAAAGAGCTGAGAAGAGAAGCCGA 1161
Query 1398 gaagagaaagGCCAA-GCCTTTACTCCAAAATGGTTCGATGTAACGGAAGAAGTCACTGC 1456
||||||||||||||| | ||| ||||||||||||| |||| ||| || ||||||||| |
Sbjct 1162 GAAGAGAAAGGCCAAAGA-TTTGCTCCAAAATGGTTTGATGAAACAGAGGAAGTCACTCC 1220
Query 1457 TACACCATGGGGTGATCTGGAAGTTTACCAATTCAATGGAAAGTACTCGGAACATCGTGC 1516
|||||||||||||||||| ||||| ||||||||||||||||||||||||| || || ||
Sbjct 1221 TACACCATGGGGTGATCTCGAAGTGTACCAATTCAATGGAAAGTACTCGGTGCACCGCGC 1280
Query 1517 -AGCTGCGGATAACTCTGAAGATAACACCG-ACCCT-AAG-TCGATCCAATTCAACCCAT 1572
| | || |||||| |||| |||| || || | | ||| | || |||||||||||| |
Sbjct 1281 CA-CAGCCGATAACCCTGAGGATA-CAACGGATG-TGAAGGT-GACCCAATTCAACCCTT 1336
Query 1573 GGCAATTCCAAGATCTGTCTACTTA 1597
|||||||||||||||| ||| ||||
Sbjct 1337 GGCAATTCCAAGATCTCTCTGCTTA 1361
> Ahg340891 jgi|Araly1|340891|fgenesh1_pg.C_scaffold_3000654
Length=939
Score = 409 bits (221), Expect = 4e-113
Identities = 345/405 (85%), Gaps = 7/405 (2%)
Strand=Plus/Plus
Query 424 AAGAGGATCGAGATGGCTATTGGAAGATGATGCAGAAGTACATAGGATCTGATGTTACAT 483
|||| || || ||||| || |||||||||||||||||||| ||||| |||||||||||||
Sbjct 530 AAGATGAACGTGATGGTTACTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACAT 589
Query 484 CAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTT-CAGAAAATGGCG 542
| |||||||| ||||||||||| ||||||||||| ||||||||| || |||||||||||
Sbjct 590 CTATGGTGACTCTTCCTGTGATCATTTTTGAACCTATGACAATG-TTGCAGAAAATGGCT 648
Query 543 GAGTTGATGGAATACTCGCATCTGCTAGACATGGCAGACAAAACCGAGGACCCTTATTTG 602
|||||||||||||||||||||||| | |||||||| |||||||| || || ||||| ||
Sbjct 649 GAGTTGATGGAATACTCGCATCTGGTGGACATGGCTGACAAAACTGAAGATCCTTACATG 708
Query 603 CGCATGGTGTATGCATCATCGTGGGCTATATCCGTGTATTATGCTTTCCAACGTACCTGG 662
| ||||| ||||||||||| |||||||| || ||||||||||||| ||| |||||||||
Sbjct 709 AGTATGGTATATGCATCATCATGGGCTATCTCTGTGTATTATGCTTACCAGCGTACCTGG 768
Query 663 AAACCATTCAATCCAATCCTTGGTGAGACTTATGAGATGGCTAATTACAATGGTG-TTAA 721
|| || ||||||||||| || ||||||||||| |||||| ||||| | ||||| | | ||
Sbjct 769 AAGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGG-GATCAA 827
Query 722 CTTCATATCTGA---ACAGGTCAGCCATCACCCACCAATGAGTGCTGGTCATGCTGAAAA 778
|| ||| |||| ||||| |||||||||||||||||||||||||||| || ||||
Sbjct 828 TTTTATAGCTGATCTGCAGGTTTGCCATCACCCACCAATGAGTGCTGGTCACGCAAAAAA 887
Query 779 TGAGCATTTTACGTATGATTGTACTTCAAAACTGAAAACAAAATT 823
|||||||| | || ||||| ||||||||||||||||| |||||
Sbjct 888 CGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATT 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5