BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09320.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478246 jgi|Araly1|478246|fgenesh2_kg.3__947__AT3G09320.1 2108 0.0
> Ahg478246 jgi|Araly1|478246|fgenesh2_kg.3__947__AT3G09320.1
Length=1351
Score = 2108 bits (1141), Expect = 0.0
Identities = 1272/1334 (95%), Gaps = 14/1334 (1%)
Strand=Plus/Plus
Query 64 AAATAATTTAAATTAAAAATCCACTCGCCGGAGACGCCGTCGTTTCGACGCCGGTGCT-C 122
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 20 AAATAATTTAAATTAAAAATCCACTCGCCGGAGACGCCGTCGTCTCGACGCCGGTGCTCC 79
Query 123 CaaaaaaaaTATGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTT 182
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CAAAAAAAAAATGAAACGGAAAGGAGTCGGATTCTCTCTCCCCGTCACGGTGGTGATGTT 139
Query 183 GGTGATCGGTTTCATCTACTTTGCCTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCT 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 140 GGTGATCGGTTTCATCTACTTTGCTTCGGTTTTCACTTTCATCGATCGGTGGTTCAGCCT 199
Query 243 CACTTCGTCTCCCGGAATCGCTAACGCCGCCGCT-TTCACCGCTTTGGCTCTGATGTGTA 301
|||||| ||||||||||| || |||||||||| | ||||||||||||||||||||||||
Sbjct 200 CACTTCATCTCCCGGAATAGCCAACGCCGCCG-TGTTCACCGCTTTGGCTCTGATGTGTG 258
Query 302 TATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TATACAATTACTCCATCGCGGTTTTCAGGGATCCGGGTCGGGTTCCACTCAATTACATGC 318
Query 362 CGGATGTTGAAGATCCGGAGAGTCCTGTTCATGAGATTAAGCGAAAGGGAGGAGATTTGA 421
| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 319 CAGATGTTGAAGATCCGGAGAGTCCTGTTCACGAGATTAAGCGCAAGGGAGGAGATTTGA 378
Query 422 GGTACTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCA 481
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GATATTGCCAAAAGTGTTCACATTTCAAACCTCCGCGAGCTCACCATTGTCGAGTTTGCA 438
Query 482 AAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGCGTAGGACACA 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 439 AAAGATGTGTGCTTAGAATGGACCACCATTGTATCTGGATCAACAACTGTGTAGGACACA 498
Query 542 CTAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATATTCTC 601
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 499 CCAACTACAAGGTCTTCTTTGTCTTTGTTGTCTATGCGGTGACTGCATGTGTATACTCCC 558
Query 602 TGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TGGTTTTACTTGTGGGAAGCCTTACTGTTGAACCTCAAGATGAAGAGGAAGAGATGGGAA 618
Query 662 GCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTAAGCATCGCGT 721
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 619 GCTATTTAAGAACTATATATGTAATTTCAGCTTTTCTTCTTATCCCATTGAGCATTGCGT 678
Query 722 TAGGTGTTCTTCTGGGGTGGCACATCTACCTCATTTTACAAAACAAGACGACTATTGAGT 781
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 679 TAGGTGTTCTTCTCGGGTGGCACATCTACCTCATTTTACAAAACAAAACGACTATCGAGT 738
Query 782 ACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 ACCATGAAGGAGTGAGAGCTATGTGGTTAGCAGAGAAAGGTGGGCAAGTCTATAAGCATC 798
Query 842 CATATGACATCGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTT 901
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CATATGACATTGGCGCATATGAAAACCTAACCTTGATTTTGGGTCCGAACATACTTTCTT 858
Query 902 GGCTCTGCCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATT 961
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GGCTCTGTCCTACATCAAGGCATATCGGTTCTGGTGTGCGTTTTCGTACAGCTTTTGATT 918
Query 962 CAATCCCTGA-TTCATCTGAAACAAAACATTAGCCAAGACCCAAATCATGTATACCTTT- 1019
|||||||| | ||| ||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 919 CAATCCCT-ACTTCTTCTGAAACAAAACCTTAGCCAAGACCCAAATCATGTATTCCTCTC 977
Query 1020 TT-CTGGGGAGTTCCACCGAAAAGGCAGCAGATTTTGAACTTCACAGCACACTGGCTCGT 1078
|| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||| ||
Sbjct 978 TTACTGGGGAGTTCCATCGAAAAGGCTGCAGATTTTTAACTTCACAGCACTCTGGCTTGT 1037
Query 1079 CCTTTTTCAAGCATTTTAGGCGCCTCAGCTTAAAACCAAGACTGGCCCGTAATCAGTACT 1138
|| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1038 CCGTTTTCAAGCATTTTAGCCGCCTCAGCTTAAAACCAAGACTAGCCCGTAATCAGTAGT 1097
Query 1139 AGACTCTGCTTGGCAAGGTTCTCCCTCTCGCATCCTTGT-AACTGGATTAAGAGCATCCA 1197
|||||||||||| |||||||||| |||||||||| |||| |||||||| ||||||||||
Sbjct 1098 AGACTCTGCTTGACAAGGTTCTCTCTCTCGCATCATTGTTAACTGGATCAAGAGCATCCG 1157
Query 1198 TTTGTGAAAAATATGGTATCGGTTAGGTATTTTCCTTGTTTTTCTTTGGATTCCTCA-AA 1256
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1158 TTTGTGAAAATTATGGTATCGGTTAGGTATTTTCCTTGTTTTTCTTTGGATTCCTCACAA 1217
Query 1257 A--A---GGAAGTTAGGTTGTGGATACAGAACTCAGAAGCTGATTATGCTTATTATACAT 1311
| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1218 AGGAAAAGGAAGGTAGGTTGTGGATACAGAACTCAGAAGCTGATTATGGTTATTATACAT 1277
Query 1312 ACCACTTAACAGGCGAAAAGACATCATTGTACGATAATTTAAGGCTTTCATATTTTGTTA 1371
||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1278 ACCACTTAACAGGTGAAAAGACATCATTGTAAGATAATTAAAGGCTTTCATATTTTGTTA 1337
Query 1372 TCAGATTCAGACAC 1385
||||| ||||||||
Sbjct 1338 TCAGAATCAGACAC 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5