BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09330.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903801 jgi|Araly1|903801|Al_scaffold_0003_929 1777 0.0
Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 562 3e-159
Ahg928601 jgi|Araly1|928601|scaffold_301058.1 187 2e-46
> Ahg903801 jgi|Araly1|903801|Al_scaffold_0003_929
Length=1602
Score = 1777 bits (962), Expect = 0.0
Identities = 1198/1311 (91%), Gaps = 19/1311 (1%)
Strand=Plus/Plus
Query 122 ACGATTCAGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTA 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ACGATTCCGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTA 148
Query 182 CACCTCCTACAATCAGTTTCATTCACCGGAGAAGTTCTCAGACATCATTCACCAGTTCTG 241
|||||||||| |||||||||| || |||||||| ||||||||||||||||||| ||
Sbjct 149 CACCTCCTACGGTCAGTTTCATACATGGGAGAAGTACTCAGACATCATTCACCAGCTCCA 208
Query 242 TCGCTTCCTTATACAAGAGACGTC-CAACCTCTATTGCAAATTCGTTTGCGTCTTCCACA 300
|||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 209 TCGCTTCCTTATACAAGAGACGTCACAA-CTCTATTATAACCTCGTTTGCGTCTTCCACA 267
Query 301 AGCAAACAACCGCTGCTCTCTGAGAAAGACGATG--T------A-TTATTCCTTTCATCT 351
||||||||||| ||||||| ||||||||||||| | | | |||||||||| ||
Sbjct 268 AGCAAACAACCATTGCTCTCCGAGAAAGACGATGTCTCAGCCAAGTCATTCCTTTCACCT 327
Query 352 CAGATCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCT 411
||| || ||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 328 CAGCTCAGGTTATCCATCACCGATTTCTCGTATGCAGAACCAAATCTCTGCTCGTTTCCT 387
Query 412 CAATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTAC 471
||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 388 CAATCTGTTCTCAATGGAATCAATGTCCTATGTGGAGTAGGTCTACTCACAATGCCTTAC 447
Query 472 GCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTT-ATCCTTTGCTATCATCAC 530
|||||||||||||||||||||||||||||||||||||| || || ||| | |||||||||
Sbjct 448 GCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTTTTCAT-CTTCGGTATCATCAC 506
Query 531 TTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTA 590
||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 507 TTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTCCTGACCTCCATACCTA 566
Query 591 CCCGGACATTGGTCAAGCTGCCTTTGGATTTACCGGCCGCCTCATCATCTCCATACTTTT 650
||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||| |
Sbjct 567 CCCCGACATTGGTCAAGCCGCCTTTGGATTCACCGGCCGCATCATCATCTCCATGCTTCT 626
Query 651 GTACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATC 710
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 627 GTACATGGAGTTATACGCATGTTGTGTGGAGTATATAATCATGATGAGCGATAACTTGTC 686
Query 711 GAGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGAT 770
||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 687 AAGAATTTTCCCCAACATTTCATTAAACATCGTTGGAGTATCTCTAGATTCTTCTCAGAT 746
Query 771 CTTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTT 830
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 747 CTTTGCCATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAGAGACCTTAGCTT 806
Query 831 ACTCTCCTATCTCTCAGCCGGAGGAGTCTTTGT-TTCGATCTTGCTTGCTCTTTGTCTCT 889
|||||||||||||||||||||||||||| || | |||||||||||| ||| |||||||||
Sbjct 807 ACTCTCCTATCTCTCAGCCGGAGGAGTC-TTCTCTTCGATCTTGCTGGCTTTTTGTCTCT 865
Query 890 TCTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAATCTCTTGATCTCG 949
|||||||||||||| |||||||||| ||||||||||| |||||| || ||||||||||||
Sbjct 866 TCTGGGTTGGGTCGTTTGATGGAGTAGGGTTTCACACTGGTGGACAAGCTCTTGATCTCG 925
Query 950 CTAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTAC 1009
|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 926 CTAACTTACCTGTCGCTATTGGGATTTTCGGGTTTGGGTTCAGTGGTCACGCGGTTTTCC 985
Query 1010 CCAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTT 1069
||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 986 CCAACATTTACTCGTCCATGAAAGACCCATCCAAGTTTCCTTTGGTGCTCCTCACTAGTT 1045
Query 1070 TTGGTTTCTGCGTATTCTTTTACATTGTCGTAGCGATTTGCGGCTACAGTATGTTTGGTG 1129
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1046 TTGGTTTCTGCGTATTCTTTTACATTGTCGTGGCGATTTGCGGCTACAGTATGTTTGGTG 1105
Query 1130 AGGCCATTCAATCACAGTTTACACTAAACATGCCACAGCAGTACACAG-CATCTAAAATC 1188
| ||||||||||| ||||||||||||||||||||||| |||| ||| | |||| ||||||
Sbjct 1106 AAGCCATTCAATCTCAGTTTACACTAAACATGCCACAACAGTTCAC-GTCATCCAAAATC 1164
Query 1189 GCAGTTTGGACAGCGGTGGTAGTACCGATGACCAAATACGCGTTAGCTCTCACACCAATT 1248
|||||||||||||| ||| || |||||||||||||||||||||| |||||||||| |||
Sbjct 1165 GCAGTTTGGACAGCAGTGATAACACCGATGACCAAATACGCGTTATCTCTCACACCGATT 1224
Query 1249 GTGCTAGGTCTAGAAGAACTTATGCTGCCATCAGAGAAGATGAGATCGTATGGAGTATCT 1308
|| || || ||||||||||||| | | | ||| | ||||||||||| ||||||||||||
Sbjct 1225 GTATTAAGTTTAGAAGAACTTATACCGTCTTCAAAAAAGATGAGATCATATGGAGTATCT 1284
Query 1309 ATCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTC 1368
|| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 ATGTTTGTTAGAACGATTCTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTC 1344
Query 1369 TTCGCGATCATGGGGGCTTTGATGGGA--TCATTCCTCGCAATGCTTGTCG 1417
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1345 TTCGCGATCATGGGGGCTTTGATGGGAGATCATTCCTCGCAATGCTTGTCG 1395
Score = 248 bits (134), Expect = 9e-65
Identities = 148/155 (95%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 1419 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCA 1478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1446 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTGTCTTGAAGGGTAGATTGAGTAAGACACA 1505
Query 1479 AATTGGAATATGCGTATTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1565
Query 1539 CTCCGCCATTGGAAGATTAGTAGGAAAACTGGATT 1573
||| ||||||||||||||||||||| || || |||
Sbjct 1566 CTCAGCCATTGGAAGATTAGTAGGAGAATTGAATT 1600
> Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1
Length=1937
Score = 562 bits (304), Expect = 3e-159
Identities = 916/1205 (76%), Gaps = 68/1205 (6%)
Strand=Plus/Plus
Query 388 GAACCAAATTTCTGCTCGTTTC-CTCAATCTGTTCTAAATGGAATCAATGTCCTTTGTGG 446
||||| || ||||||| ||| ||||||| || || || |||| |||||| || |||||
Sbjct 602 GAACCTAACCTCTGCTC-CTTCTCTCAATCCGTCCTCAACGGAACCAATGTACTGTGTGG 660
Query 447 AATA-AGTCTACTCACAATGCCTTACGCGGTGAAAGAAGGAGGATGGCTCGGGCTTT-GT 504
| || || || | ||||||||||| || | |||||| | |||||||| || ||| ||
Sbjct 661 ATTAGGGT-TAATAACAATGCCTTATGCTATAAAAGAAAGTGGATGGCT-TGG-TTTGGT 717
Query 505 -ATACTCTTATCCTTTGCTA-TCATCACTTGCTACACCGGTATCCTCCTCAA-ACGATGT 561
|||||||| | ||| | | |||||||||||||||| ||| | ||| | || | |||||
Sbjct 718 AATACTCTTGTTCTTCG-GAGTCATCACTTGCTACACAGGTGTTCTCATGAAGA-GATGT 775
Query 562 CTTGAGAGCTCTTCTGATCTCCGTACCTACCCGGACATTGGTCAAGCTGCCTTTGGATTT 621
|| || || ||| ||| ||| | || ||||| || || |||||||| ||||||||| |
Sbjct 776 CTAGAAAGTTCTCCTGGTCTTCAAACTTACCCCGATATCGGTCAAGCCGCCTTTGGAATC 835
Query 622 ACCGGCCGCCTCATCATCTCCATACTTTTGTACATGGAGTTATACGTATG-TTGTGTGGA 680
||||| ||| ||||||| ||||| ||| | ||| ||||||| |||| | | |||||||||
Sbjct 836 ACCGGTCGCTTCATCATATCCATTCTTCTATACGTGGAGTTGTACGCA-GCTTGTGTGGA 894
Query 681 GTATATAATCATGATGAGCGATAATTTATCGA-GAGTTTTCCCCAACATTACATTAAACA 739
|| ||||||||||||||||| || ||||| | || | ||||| ||| || || | | ||
Sbjct 895 ATACATAATCATGATGAGCGACAACTTATC-AGGACTATTCCCAAACGTTTCACTGAGCA 953
Query 740 TCG-TT---GGAGTATCTCTAGATTCTCCTCAGATCTTTGCTATATCAGCTACTCTTATT 795
| | || ||| |||||||||||||||||||||||||||| || | | | |||||| ||
Sbjct 954 TTGCTTCAGGGA-TATCTCTAGATTCTCCTCAGATCTTTGCAATCTTAACCACTCTTCTT 1012
Query 796 GTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTACTCTCCTATCTCTCAGCCGGAGGA 855
|||||||| ||||| ||||| ||||| |||||||| || || || || |||| ||||||
Sbjct 1013 GTTCTTCCAACAGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTTTCAGTTGGAGGA 1072
Query 856 GTCTTTGTTTCGATCTTGCTTGCTCTTTGTCTCTTCTGGGTTGGGTCGGTTGATGGAGTC 915
||||| | || ||||| || | ||| || || |||||||| || | |||||||||| |
Sbjct 1073 GTCTTGGCGTCAATCTTACTCGGTCTCTGCCTTTTCTGGGTCGGTTTGGTTGATGGAATA 1132
Query 916 GGGTTTCA--CA-CGGGTGGAAAATCTCTTGATCTC-GCTAACTTACCCGTCGCTATTGG 971
||||| || || | || || | || ||||| | ||||||||| ||| |||| ||
Sbjct 1133 GGGTTCCATGCAACAGGACGAGTTT-TC--GATCTTAG-TAACTTACCTGTCACTATAGG 1188
Query 972 GATATTCGGGTTTGGGTTCAGT-GG-TCACGCAGTTTTACCCAGCATTTACTCTTCCATG 1029
||| ||||||||||| || | | || ||| | ||||| |||| || || |||||||||
Sbjct 1189 GATTTTCGGGTTTGG-TT-ACTCGGGTCATTCGGTTTTTCCCAATATCTATTCTTCCATG 1246
Query 1030 AAAGAACCATCCAAG-TTTCCT-TTGGTGCTTC-TCAT-TAGTTTTGGTTTCTGCGTATT 1085
|| || || || ||| |||||| ||| | ||| |||| | | ||| |||||||| |
Sbjct 1247 AAGGATCCTTC-AAGGTTTCCTCTTG-T-CTTAGTCATCT-GCTTTAGTTTCTGCACGGT 1302
Query 1086 CTTTTACATTG-TCGTAGCGATTTGCGGCTACAGTATGTTTGGTGAGGCCATTC-AATCA 1143
||| ||||| | | || ||| | |||||||||| |||||||| || || | || |||||
Sbjct 1303 CTTGTACATAGCT-GTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGC-AGTCGAATCA 1360
Query 1144 CAGTTTACACTAAACATGCCACAGCAGTACACAGCATCTAAAATCGCAGTTTGGACAGCG 1203
|| || ||| ||||||||||| | || | | |||||||| ||||||| |||||||||
Sbjct 1361 CAATTCACATTAAACATGCCAAAACAATTCTTTCCATCTAAAGTCGCAGTCTGGACAGCG 1420
Query 1204 GTGGT-AGTACCGATGACCAAATACGCGTTAGCT-CTCACACCAATTGTGCT-AGGTCTA 1260
|| | | ||| ||||| |||||||||||| | | ||| ||||| || | || |||
Sbjct 1421 GTCATCAC-ACCAATGACAAAATACGCGTTAACAAC-CACCCCAATCGTTATGAG-TCTC 1477
Query 1261 GAAGAACTTATGCTGCCATCAGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAA- 1319
|||||||| || | ||| ||| ||||||| ||| |||| ||||| || || ||| |
Sbjct 1478 GAAGAACTCAT--T-CCAACAGCTAAGATGAAATCACATGGTGTATCGATATT-ATTCAG 1533
Query 1320 AAC-GATTTTAGTT-CTCTCTACTTTGGTTGTCGCACTTACA-TTCCCATTCTTCGCGAT 1376
||| | | |||| | |||||||||||| || || ||| || |||| |||||||||||
Sbjct 1534 AACAGCCCT-AGTTAC-CTCTACTTTGGTGGTTGCTCTTTCAGTTCCT-TTCTTCGCGAT 1590
Query 1377 CATGGGGGCTTTGATGGGATCATTCCTCGCAATGCTTGTCGATTTTATCTTTCCTTGTCT 1436
| ||| || | || ||||| ||||| ||||||||||| | | ||||||| || |||||
Sbjct 1591 CGTGGCAGCACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCT 1650
Query 1437 TTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCAAATTGGAATATGCGTATT 1496
||||||||||||||| | ||||||| ||| || || || ||||||||| ||||| ||||
Sbjct 1651 ATGTTATCTCAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATT 1710
Query 1497 CATCATAATCT-CTGGCATTG-TAAGCGGTTGCTGCGGGACGTACTCCGCCAT-TGGAAG 1553
||| ||| ||| | || ||| | || ||||| || || || ||||| || || | |||
Sbjct 1711 CATTATACTCTTCGGG--TTGGTGAGTGGTTGTTGTGGTACTTACTCGGCTATCTC-AAG 1767
Query 1554 ATTAG 1558
|||||
Sbjct 1768 ATTAG 1772
> Ahg928601 jgi|Araly1|928601|scaffold_301058.1
Length=216
Score = 187 bits (101), Expect = 2e-46
Identities = 142/162 (88%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 1212 ACCGATGACCAAATACGCGTTAGCTCTCACACCAATTGTGCTAGGTCTAGAAGAACTTAT 1271
||||||||||||||| |||||| |||||||||| ||||| || || |||||||||||||
Sbjct 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79
Query 1272 GCTGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330
| | | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| |||
Sbjct 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138
Query 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372
|||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5