BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09330.1 Length=1575 Score E Sequences producing significant alignments: (Bits) Value Ahg903801 jgi|Araly1|903801|Al_scaffold_0003_929 1777 0.0 Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 562 3e-159 Ahg928601 jgi|Araly1|928601|scaffold_301058.1 187 2e-46 > Ahg903801 jgi|Araly1|903801|Al_scaffold_0003_929 Length=1602 Score = 1777 bits (962), Expect = 0.0 Identities = 1198/1311 (91%), Gaps = 19/1311 (1%) Strand=Plus/Plus Query 122 ACGATTCAGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTA 181 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 ACGATTCCGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTA 148 Query 182 CACCTCCTACAATCAGTTTCATTCACCGGAGAAGTTCTCAGACATCATTCACCAGTTCTG 241 |||||||||| |||||||||| || |||||||| ||||||||||||||||||| || Sbjct 149 CACCTCCTACGGTCAGTTTCATACATGGGAGAAGTACTCAGACATCATTCACCAGCTCCA 208 Query 242 TCGCTTCCTTATACAAGAGACGTC-CAACCTCTATTGCAAATTCGTTTGCGTCTTCCACA 300 |||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||| Sbjct 209 TCGCTTCCTTATACAAGAGACGTCACAA-CTCTATTATAACCTCGTTTGCGTCTTCCACA 267 Query 301 AGCAAACAACCGCTGCTCTCTGAGAAAGACGATG--T------A-TTATTCCTTTCATCT 351 ||||||||||| ||||||| ||||||||||||| | | | |||||||||| || Sbjct 268 AGCAAACAACCATTGCTCTCCGAGAAAGACGATGTCTCAGCCAAGTCATTCCTTTCACCT 327 Query 352 CAGATCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCT 411 ||| || ||||||||| ||||||| ||||||||| |||||||||| |||||||||||||| Sbjct 328 CAGCTCAGGTTATCCATCACCGATTTCTCGTATGCAGAACCAAATCTCTGCTCGTTTCCT 387 Query 412 CAATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTAC 471 ||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||| Sbjct 388 CAATCTGTTCTCAATGGAATCAATGTCCTATGTGGAGTAGGTCTACTCACAATGCCTTAC 447 Query 472 GCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTT-ATCCTTTGCTATCATCAC 530 |||||||||||||||||||||||||||||||||||||| || || ||| | ||||||||| Sbjct 448 GCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTTTTCAT-CTTCGGTATCATCAC 506 Query 531 TTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTA 590 ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| Sbjct 507 TTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTCCTGACCTCCATACCTA 566 Query 591 CCCGGACATTGGTCAAGCTGCCTTTGGATTTACCGGCCGCCTCATCATCTCCATACTTTT 650 ||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||| | Sbjct 567 CCCCGACATTGGTCAAGCCGCCTTTGGATTCACCGGCCGCATCATCATCTCCATGCTTCT 626 Query 651 GTACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATC 710 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || Sbjct 627 GTACATGGAGTTATACGCATGTTGTGTGGAGTATATAATCATGATGAGCGATAACTTGTC 686 Query 711 GAGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGAT 770 ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 687 AAGAATTTTCCCCAACATTTCATTAAACATCGTTGGAGTATCTCTAGATTCTTCTCAGAT 746 Query 771 CTTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTT 830 |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 747 CTTTGCCATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAGAGACCTTAGCTT 806 Query 831 ACTCTCCTATCTCTCAGCCGGAGGAGTCTTTGT-TTCGATCTTGCTTGCTCTTTGTCTCT 889 |||||||||||||||||||||||||||| || | |||||||||||| ||| ||||||||| Sbjct 807 ACTCTCCTATCTCTCAGCCGGAGGAGTC-TTCTCTTCGATCTTGCTGGCTTTTTGTCTCT 865 Query 890 TCTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAATCTCTTGATCTCG 949 |||||||||||||| |||||||||| ||||||||||| |||||| || |||||||||||| Sbjct 866 TCTGGGTTGGGTCGTTTGATGGAGTAGGGTTTCACACTGGTGGACAAGCTCTTGATCTCG 925 Query 950 CTAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTAC 1009 |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 926 CTAACTTACCTGTCGCTATTGGGATTTTCGGGTTTGGGTTCAGTGGTCACGCGGTTTTCC 985 Query 1010 CCAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTT 1069 ||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||| Sbjct 986 CCAACATTTACTCGTCCATGAAAGACCCATCCAAGTTTCCTTTGGTGCTCCTCACTAGTT 1045 Query 1070 TTGGTTTCTGCGTATTCTTTTACATTGTCGTAGCGATTTGCGGCTACAGTATGTTTGGTG 1129 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1046 TTGGTTTCTGCGTATTCTTTTACATTGTCGTGGCGATTTGCGGCTACAGTATGTTTGGTG 1105 Query 1130 AGGCCATTCAATCACAGTTTACACTAAACATGCCACAGCAGTACACAG-CATCTAAAATC 1188 | ||||||||||| ||||||||||||||||||||||| |||| ||| | |||| |||||| Sbjct 1106 AAGCCATTCAATCTCAGTTTACACTAAACATGCCACAACAGTTCAC-GTCATCCAAAATC 1164 Query 1189 GCAGTTTGGACAGCGGTGGTAGTACCGATGACCAAATACGCGTTAGCTCTCACACCAATT 1248 |||||||||||||| ||| || |||||||||||||||||||||| |||||||||| ||| Sbjct 1165 GCAGTTTGGACAGCAGTGATAACACCGATGACCAAATACGCGTTATCTCTCACACCGATT 1224 Query 1249 GTGCTAGGTCTAGAAGAACTTATGCTGCCATCAGAGAAGATGAGATCGTATGGAGTATCT 1308 || || || ||||||||||||| | | | ||| | ||||||||||| |||||||||||| Sbjct 1225 GTATTAAGTTTAGAAGAACTTATACCGTCTTCAAAAAAGATGAGATCATATGGAGTATCT 1284 Query 1309 ATCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTC 1368 || ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 ATGTTTGTTAGAACGATTCTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTC 1344 Query 1369 TTCGCGATCATGGGGGCTTTGATGGGA--TCATTCCTCGCAATGCTTGTCG 1417 ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1345 TTCGCGATCATGGGGGCTTTGATGGGAGATCATTCCTCGCAATGCTTGTCG 1395 Score = 248 bits (134), Expect = 9e-65 Identities = 148/155 (95%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 1419 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCA 1478 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1446 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTGTCTTGAAGGGTAGATTGAGTAAGACACA 1505 Query 1479 AATTGGAATATGCGTATTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1538 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1506 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1565 Query 1539 CTCCGCCATTGGAAGATTAGTAGGAAAACTGGATT 1573 ||| ||||||||||||||||||||| || || ||| Sbjct 1566 CTCAGCCATTGGAAGATTAGTAGGAGAATTGAATT 1600 > Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 Length=1937 Score = 562 bits (304), Expect = 3e-159 Identities = 916/1205 (76%), Gaps = 68/1205 (6%) Strand=Plus/Plus Query 388 GAACCAAATTTCTGCTCGTTTC-CTCAATCTGTTCTAAATGGAATCAATGTCCTTTGTGG 446 ||||| || ||||||| ||| ||||||| || || || |||| |||||| || ||||| Sbjct 602 GAACCTAACCTCTGCTC-CTTCTCTCAATCCGTCCTCAACGGAACCAATGTACTGTGTGG 660 Query 447 AATA-AGTCTACTCACAATGCCTTACGCGGTGAAAGAAGGAGGATGGCTCGGGCTTT-GT 504 | || || || | ||||||||||| || | |||||| | |||||||| || ||| || Sbjct 661 ATTAGGGT-TAATAACAATGCCTTATGCTATAAAAGAAAGTGGATGGCT-TGG-TTTGGT 717 Query 505 -ATACTCTTATCCTTTGCTA-TCATCACTTGCTACACCGGTATCCTCCTCAA-ACGATGT 561 |||||||| | ||| | | |||||||||||||||| ||| | ||| | || | ||||| Sbjct 718 AATACTCTTGTTCTTCG-GAGTCATCACTTGCTACACAGGTGTTCTCATGAAGA-GATGT 775 Query 562 CTTGAGAGCTCTTCTGATCTCCGTACCTACCCGGACATTGGTCAAGCTGCCTTTGGATTT 621 || || || ||| ||| ||| | || ||||| || || |||||||| ||||||||| | Sbjct 776 CTAGAAAGTTCTCCTGGTCTTCAAACTTACCCCGATATCGGTCAAGCCGCCTTTGGAATC 835 Query 622 ACCGGCCGCCTCATCATCTCCATACTTTTGTACATGGAGTTATACGTATG-TTGTGTGGA 680 ||||| ||| ||||||| ||||| ||| | ||| ||||||| |||| | | ||||||||| Sbjct 836 ACCGGTCGCTTCATCATATCCATTCTTCTATACGTGGAGTTGTACGCA-GCTTGTGTGGA 894 Query 681 GTATATAATCATGATGAGCGATAATTTATCGA-GAGTTTTCCCCAACATTACATTAAACA 739 || ||||||||||||||||| || ||||| | || | ||||| ||| || || | | || Sbjct 895 ATACATAATCATGATGAGCGACAACTTATC-AGGACTATTCCCAAACGTTTCACTGAGCA 953 Query 740 TCG-TT---GGAGTATCTCTAGATTCTCCTCAGATCTTTGCTATATCAGCTACTCTTATT 795 | | || ||| |||||||||||||||||||||||||||| || | | | |||||| || Sbjct 954 TTGCTTCAGGGA-TATCTCTAGATTCTCCTCAGATCTTTGCAATCTTAACCACTCTTCTT 1012 Query 796 GTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTACTCTCCTATCTCTCAGCCGGAGGA 855 |||||||| ||||| ||||| ||||| |||||||| || || || || |||| |||||| Sbjct 1013 GTTCTTCCAACAGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTTTCAGTTGGAGGA 1072 Query 856 GTCTTTGTTTCGATCTTGCTTGCTCTTTGTCTCTTCTGGGTTGGGTCGGTTGATGGAGTC 915 ||||| | || ||||| || | ||| || || |||||||| || | |||||||||| | Sbjct 1073 GTCTTGGCGTCAATCTTACTCGGTCTCTGCCTTTTCTGGGTCGGTTTGGTTGATGGAATA 1132 Query 916 GGGTTTCA--CA-CGGGTGGAAAATCTCTTGATCTC-GCTAACTTACCCGTCGCTATTGG 971 ||||| || || | || || | || ||||| | ||||||||| ||| |||| || Sbjct 1133 GGGTTCCATGCAACAGGACGAGTTT-TC--GATCTTAG-TAACTTACCTGTCACTATAGG 1188 Query 972 GATATTCGGGTTTGGGTTCAGT-GG-TCACGCAGTTTTACCCAGCATTTACTCTTCCATG 1029 ||| ||||||||||| || | | || ||| | ||||| |||| || || ||||||||| Sbjct 1189 GATTTTCGGGTTTGG-TT-ACTCGGGTCATTCGGTTTTTCCCAATATCTATTCTTCCATG 1246 Query 1030 AAAGAACCATCCAAG-TTTCCT-TTGGTGCTTC-TCAT-TAGTTTTGGTTTCTGCGTATT 1085 || || || || ||| |||||| ||| | ||| |||| | | ||| |||||||| | Sbjct 1247 AAGGATCCTTC-AAGGTTTCCTCTTG-T-CTTAGTCATCT-GCTTTAGTTTCTGCACGGT 1302 Query 1086 CTTTTACATTG-TCGTAGCGATTTGCGGCTACAGTATGTTTGGTGAGGCCATTC-AATCA 1143 ||| ||||| | | || ||| | |||||||||| |||||||| || || | || ||||| Sbjct 1303 CTTGTACATAGCT-GTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGC-AGTCGAATCA 1360 Query 1144 CAGTTTACACTAAACATGCCACAGCAGTACACAGCATCTAAAATCGCAGTTTGGACAGCG 1203 || || ||| ||||||||||| | || | | |||||||| ||||||| ||||||||| Sbjct 1361 CAATTCACATTAAACATGCCAAAACAATTCTTTCCATCTAAAGTCGCAGTCTGGACAGCG 1420 Query 1204 GTGGT-AGTACCGATGACCAAATACGCGTTAGCT-CTCACACCAATTGTGCT-AGGTCTA 1260 || | | ||| ||||| |||||||||||| | | ||| ||||| || | || ||| Sbjct 1421 GTCATCAC-ACCAATGACAAAATACGCGTTAACAAC-CACCCCAATCGTTATGAG-TCTC 1477 Query 1261 GAAGAACTTATGCTGCCATCAGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAA- 1319 |||||||| || | ||| ||| ||||||| ||| |||| ||||| || || ||| | Sbjct 1478 GAAGAACTCAT--T-CCAACAGCTAAGATGAAATCACATGGTGTATCGATATT-ATTCAG 1533 Query 1320 AAC-GATTTTAGTT-CTCTCTACTTTGGTTGTCGCACTTACA-TTCCCATTCTTCGCGAT 1376 ||| | | |||| | |||||||||||| || || ||| || |||| ||||||||||| Sbjct 1534 AACAGCCCT-AGTTAC-CTCTACTTTGGTGGTTGCTCTTTCAGTTCCT-TTCTTCGCGAT 1590 Query 1377 CATGGGGGCTTTGATGGGATCATTCCTCGCAATGCTTGTCGATTTTATCTTTCCTTGTCT 1436 | ||| || | || ||||| ||||| ||||||||||| | | ||||||| || ||||| Sbjct 1591 CGTGGCAGCACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCT 1650 Query 1437 TTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCAAATTGGAATATGCGTATT 1496 ||||||||||||||| | ||||||| ||| || || || ||||||||| ||||| |||| Sbjct 1651 ATGTTATCTCAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATT 1710 Query 1497 CATCATAATCT-CTGGCATTG-TAAGCGGTTGCTGCGGGACGTACTCCGCCAT-TGGAAG 1553 ||| ||| ||| | || ||| | || ||||| || || || ||||| || || | ||| Sbjct 1711 CATTATACTCTTCGGG--TTGGTGAGTGGTTGTTGTGGTACTTACTCGGCTATCTC-AAG 1767 Query 1554 ATTAG 1558 ||||| Sbjct 1768 ATTAG 1772 > Ahg928601 jgi|Araly1|928601|scaffold_301058.1 Length=216 Score = 187 bits (101), Expect = 2e-46 Identities = 142/162 (88%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 1212 ACCGATGACCAAATACGCGTTAGCTCTCACACCAATTGTGCTAGGTCTAGAAGAACTTAT 1271 ||||||||||||||| |||||| |||||||||| ||||| || || ||||||||||||| Sbjct 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79 Query 1272 GCTGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330 | | | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| ||| Sbjct 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138 Query 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372 |||||| ||||||||||||||||||||||||||||||||||| Sbjct 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59001789505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5