BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09340.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903801 jgi|Araly1|903801|Al_scaffold_0003_929 1773 0.0
Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 545 3e-154
Ahg928601 jgi|Araly1|928601|scaffold_301058.1 198 9e-50
> Ahg903801 jgi|Araly1|903801|Al_scaffold_0003_929
Length=1602
Score = 1773 bits (960), Expect = 0.0
Identities = 1197/1310 (91%), Gaps = 21/1310 (2%)
Strand=Plus/Plus
Query 124 GATTCCGCTTTC-TGGCCTCAGAGTTATAGACACTCTGTGGATCTCTTGACCGGAGTTAC 182
|||||||| | | ||||||| ||||||| |||| ||||||||| ||||||||||||||||
Sbjct 91 GATTCCGC-TCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTAC 149
Query 183 ACCTCCTATGGTCAGTTTCATACAAGGGAGAAGTACTGAGACATCATTCAGTAGCTCCAT 242
|||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||
Sbjct 150 ACCTCCTACGGTCAGTTTCATACATGGGAGAAGTACTCAGACATCATTCACCAGCTCCAT 209
Query 243 CGCTTCCTTATACAAGAGACGTC-CAACCTCTATTGCAAATTCGTTTGTGTCTTCCACAA 301
||||||||||||||||||||||| ||| ||||||| || ||||||| |||||||||||
Sbjct 210 CGCTTCCTTATACAAGAGACGTCACAA-CTCTATTATAACCTCGTTTGCGTCTTCCACAA 268
Query 302 GCAAACAACCGCTGCTCTCTGAGAAAGACGATG--T------A-TCATTCCTTTCATCTC 352
|||||||||| ||||||| ||||||||||||| | | |||||||||||| |||
Sbjct 269 GCAAACAACCATTGCTCTCCGAGAAAGACGATGTCTCAGCCAAGTCATTCCTTTCACCTC 328
Query 353 AGGTCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCCC 412
|| || ||||||||| ||||||| ||||||||| |||||||||| ||||||||||||| |
Sbjct 329 AGCTCAGGTTATCCATCACCGATTTCTCGTATGCAGAACCAAATCTCTGCTCGTTTCCTC 388
Query 413 AATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTACG 472
|||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 389 AATCTGTTCTCAATGGAATCAATGTCCTATGTGGAGTAGGTCTACTCACAATGCCTTACG 448
Query 473 CGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTT-ATCCTTTGCTATCATCACT 531
||||||||||||||||||||||||||||||||||||| || || ||| | ||||||||||
Sbjct 449 CGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTTTTCAT-CTTCGGTATCATCACT 507
Query 532 TGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTAC 591
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 508 TGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTCCTGACCTCCATACCTAC 567
Query 592 CCGGACATTGGTCAAGCTGCCTTTGGATTTACAGGCCGCCTCATCATCTCCATACTTCTG 651
|| |||||||||||||| ||||||||||| || |||||| ||||||||||||| ||||||
Sbjct 568 CCCGACATTGGTCAAGCCGCCTTTGGATTCACCGGCCGCATCATCATCTCCATGCTTCTG 627
Query 652 TACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATCG 711
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 628 TACATGGAGTTATACGCATGTTGTGTGGAGTATATAATCATGATGAGCGATAACTTGTCA 687
Query 712 AGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGATC 771
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 688 AGAATTTTCCCCAACATTTCATTAAACATCGTTGGAGTATCTCTAGATTCTTCTCAGATC 747
Query 772 TTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTA 831
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 748 TTTGCCATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAGAGACCTTAGCTTA 807
Query 832 CTCTCCTATCTCTCAGCCGGAGGAGTCTTTGT-TTCGATCTTGCTTGCTCTTTGTCTCTT 890
||||||||||||||||||||||||||| || | |||||||||||| ||| ||||||||||
Sbjct 808 CTCTCCTATCTCTCAGCCGGAGGAGTC-TTCTCTTCGATCTTGCTGGCTTTTTGTCTCTT 866
Query 891 CTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAAGCTCTTGATCTCGC 950
||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 867 CTGGGTTGGGTCGTTTGATGGAGTAGGGTTTCACACTGGTGGACAAGCTCTTGATCTCGC 926
Query 951 TAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTACC 1010
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 927 TAACTTACCTGTCGCTATTGGGATTTTCGGGTTTGGGTTCAGTGGTCACGCGGTTTTCCC 986
Query 1011 CAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTTT 1070
|| ||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 987 CAACATTTACTCGTCCATGAAAGACCCATCCAAGTTTCCTTTGGTGCTCCTCACTAGTTT 1046
Query 1071 TGGTTTCTGCGTATTCTTTTACATTGCCGTGGCGATTTGCGGCTACAGTATGTTTGGTGA 1130
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1047 TGGTTTCTGCGTATTCTTTTACATTGTCGTGGCGATTTGCGGCTACAGTATGTTTGGTGA 1106
Query 1131 GGCCATTCAATCGCAGTTTACACTAAACATGCCACAACAGTACACAG-CATCTAAAATCG 1189
||||||||||| |||||||||||||||||||||||||||| ||| | |||| |||||||
Sbjct 1107 AGCCATTCAATCTCAGTTTACACTAAACATGCCACAACAGTTCAC-GTCATCCAAAATCG 1165
Query 1190 CAGTTTGGACAGCGGTGGTAGTACCAATGACCAAATACGCGTTAGCTCTCACACCGATTG 1249
||||||||||||| ||| || ||| |||||||||||||||||| |||||||||||||||
Sbjct 1166 CAGTTTGGACAGCAGTGATAACACCGATGACCAAATACGCGTTATCTCTCACACCGATTG 1225
Query 1250 TGCTAGGTTTAGAAGAACTTATGCCGCCATCAGAGAAGATGAGATCGTATGGAGTATCTA 1309
| || |||||||||||||||| ||| | ||| | ||||||||||| |||||||||||||
Sbjct 1226 TATTAAGTTTAGAAGAACTTATACCGTCTTCAAAAAAGATGAGATCATATGGAGTATCTA 1285
Query 1310 TCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCT 1369
| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TGTTTGTTAGAACGATTCTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCT 1345
Query 1370 TCGCGATCATGGGGGCTTTGATGGGA--TCATTCCTCGCAACGCTTGTCG 1417
|||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1346 TCGCGATCATGGGGGCTTTGATGGGAGATCATTCCTCGCAATGCTTGTCG 1395
Score = 270 bits (146), Expect = 2e-71
Identities = 152/155 (98%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 1419 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCA 1478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1446 TTTTATCTTTCCTTGTCTTTGTTATCTCAGTGTCTTGAAGGGTAGATTGAGTAAGACACA 1505
Query 1479 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTA 1565
Query 1539 CTCCGCCATTGGAAGATTAGTAGGAGAATTGAATT 1573
||| |||||||||||||||||||||||||||||||
Sbjct 1566 CTCAGCCATTGGAAGATTAGTAGGAGAATTGAATT 1600
> Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1
Length=1937
Score = 545 bits (295), Expect = 3e-154
Identities = 910/1202 (76%), Gaps = 62/1202 (5%)
Strand=Plus/Plus
Query 388 GAACCAAATTTCTGCTCGTTTC-CCCAATCTGTTCTAAATGGAATCAATGTCCTTTGTGG 446
||||| || ||||||| ||| | ||||| || || || |||| |||||| || |||||
Sbjct 602 GAACCTAACCTCTGCTC-CTTCTCTCAATCCGTCCTCAACGGAACCAATGTACTGTGTGG 660
Query 447 AATA-AGTCTACTCACAATGCCTTACGCGGTGAAAGAAGGAGGATGGCTCGGGCTTT-GT 504
| || || || | ||||||||||| || | |||||| | |||||||| || ||| ||
Sbjct 661 ATTAGGGT-TAATAACAATGCCTTATGCTATAAAAGAAAGTGGATGGCT-TGG-TTTGGT 717
Query 505 -ATACTCTTATCCTTTGCTA-TCATCACTTGCTACACCGGTATCCTCCTCAA-ACGATGT 561
|||||||| | ||| | | |||||||||||||||| ||| | ||| | || | |||||
Sbjct 718 AATACTCTTGTTCTTCG-GAGTCATCACTTGCTACACAGGTGTTCTCATGAAGA-GATGT 775
Query 562 CTTGAGAGCTCTTCTGATCTCCGTACCTACCCGGACATTGGTCAAGCTGCCTTTGGATTT 621
|| || || ||| ||| ||| | || ||||| || || |||||||| ||||||||| |
Sbjct 776 CTAGAAAGTTCTCCTGGTCTTCAAACTTACCCCGATATCGGTCAAGCCGCCTTTGGAATC 835
Query 622 ACAGGCCGCCTCATCATCTCCATACTTCTGTACATGGAGTTATACGTATG-TTGTGTGGA 680
|| || ||| ||||||| ||||| ||||| ||| ||||||| |||| | | |||||||||
Sbjct 836 ACCGGTCGCTTCATCATATCCATTCTTCTATACGTGGAGTTGTACGCA-GCTTGTGTGGA 894
Query 681 GTATATAATCATGATGAGCGATAATTTATCGA-GAGTTTTCCCCAACATTACATTAAACA 739
|| ||||||||||||||||| || ||||| | || | ||||| ||| || || | | ||
Sbjct 895 ATACATAATCATGATGAGCGACAACTTATC-AGGACTATTCCCAAACGTTTCACTGAGCA 953
Query 740 TCG-TT---GGAGTATCTCTAGATTCTCCTCAGATCTTTGCTATATCAGCTACTCTTATT 795
| | || ||| |||||||||||||||||||||||||||| || | | | |||||| ||
Sbjct 954 TTGCTTCAGGGA-TATCTCTAGATTCTCCTCAGATCTTTGCAATCTTAACCACTCTTCTT 1012
Query 796 GTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTACTCTCCTATCTCTCAGCCGGAGGA 855
|||||||| ||||| ||||| ||||| |||||||| || || || || |||| ||||||
Sbjct 1013 GTTCTTCCAACAGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTTTCAGTTGGAGGA 1072
Query 856 GTCTTTGTTTCGATCTTGCTTGCTCTTTGTCTCTTCTGGGTTGGGTCGGTTGATGGAGTC 915
||||| | || ||||| || | ||| || || |||||||| || | |||||||||| |
Sbjct 1073 GTCTTGGCGTCAATCTTACTCGGTCTCTGCCTTTTCTGGGTCGGTTTGGTTGATGGAATA 1132
Query 916 GGGTTTCACACGGGTGGAAAAGCTCTT-GATCTC-GCTAACTTACCCGTCGCTATTGGGA 973
||||| || | ||| || | || ||||| | ||||||||| ||| |||| ||||
Sbjct 1133 GGGTTCCATGCAACAGGACGAGTT-TTCGATCTTAG-TAACTTACCTGTCACTATAGGGA 1190
Query 974 TATTCGGGTTTGGGTTCAGT-GG-TCACGCAGTTTTACCCAGCATTTACTCTTCCATGAA 1031
| ||||||||||| || | | || ||| | ||||| |||| || || |||||||||||
Sbjct 1191 TTTTCGGGTTTGG-TT-ACTCGGGTCATTCGGTTTTTCCCAATATCTATTCTTCCATGAA 1248
Query 1032 AGAACCATCCAAG-TTTCCT-TTGGTGCTTC-TCAT-TAGTTTTGGTTTCTGCGTATTCT 1087
|| || || ||| |||||| ||| | ||| |||| | | ||| |||||||| |||
Sbjct 1249 GGATCCTTC-AAGGTTTCCTCTTG-T-CTTAGTCATCT-GCTTTAGTTTCTGCACGGTCT 1304
Query 1088 TTTACATTGCCGTGGCGATTTGCGGCTACAGTATGTTTGGTGAGGCCATTC-AATCGCAG 1146
| ||||| || || ||| | |||||||||| |||||||| || || | || |||| ||
Sbjct 1305 TGTACATAGCTGTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGC-AGTCGAATCACAA 1363
Query 1147 TTTACACTAAACATGCCACAACAGTACACAGCATCTAAAATCGCAGTTTGGACAGCGGTG 1206
|| ||| ||||||||||| |||| | | |||||||| ||||||| |||||||||||
Sbjct 1364 TTCACATTAAACATGCCAAAACAATTCTTTCCATCTAAAGTCGCAGTCTGGACAGCGGTC 1423
Query 1207 GT-AGTACCAATGACCAAATACGCGTTAGCT-CTCACACCGATTGTGCT-AGGTTTAGAA 1263
| | ||||||||| |||||||||||| | | ||| || || || | || | | |||
Sbjct 1424 ATCAC-ACCAATGACAAAATACGCGTTAACAAC-CACCCCAATCGTTATGAG-TCTCGAA 1480
Query 1264 GAACTTATGCCGCCATCAGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAA-AAC 1322
||||| || || | ||| ||||||| ||| |||| ||||| || || ||| | |||
Sbjct 1481 GAACTCATTCCA--A-CAGCTAAGATGAAATCACATGGTGTATCGATATT-ATTCAGAAC 1536
Query 1323 -GATTTTAGTT-CTCTCTACTTTGGTTGTCGCACTTACA-TTCCCATTCTTCGCGATCAT 1379
| | |||| | |||||||||||| || || ||| || |||| |||||||||||| |
Sbjct 1537 AGCCCT-AGTTAC-CTCTACTTTGGTGGTTGCTCTTTCAGTTCCT-TTCTTCGCGATCGT 1593
Query 1380 GGGGGCTTTGATGGGATCATTCCTCGCAACGCTTGTCGATTTTATCTTTCCTTGTCTTTG 1439
|| || | || ||||| ||||| |||| |||||| | | ||||||| || ||||| ||
Sbjct 1594 GGCAGCACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCTATG 1653
Query 1440 TTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCAAATTGGAATATGCGTTTTCAT 1499
||||||||||||| | ||||||| ||| || || || ||||||||| ||||| | |||||
Sbjct 1654 TTATCTCAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATTCAT 1713
Query 1500 CATAATCT-CTGGCATTG-TAAGCGGTTGCTGCGGGACGTACTCCGCCAT-TGGAAGATT 1556
||| ||| | || ||| | || ||||| || || || ||||| || || | ||||||
Sbjct 1714 TATACTCTTCGGG--TTGGTGAGTGGTTGTTGTGGTACTTACTCGGCTATCTC-AAGATT 1770
Query 1557 AG 1558
||
Sbjct 1771 AG 1772
> Ahg928601 jgi|Araly1|928601|scaffold_301058.1
Length=216
Score = 198 bits (107), Expect = 9e-50
Identities = 144/162 (89%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 1212 ACCAATGACCAAATACGCGTTAGCTCTCACACCGATTGTGCTAGGTTTAGAAGAACTTAT 1271
||| ||||||||||| |||||| |||||||||||||||| || ||||||||||||||||
Sbjct 20 ACCGATGACCAAATATGCGTTATCTCTCACACCGATTGTATTAAGTTTAGAAGAACTTAT 79
Query 1272 GCCGCCATC-AGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAG 1330
||| | || | | ||||||||||| |||||||||||||| ||| ||| ||||||| |||
Sbjct 80 ACCGTCTTCAATA-AAGATGAGATCATATGGAGTATCTATGTTTGTTAGAACGATTCTAG 138
Query 1331 TTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 1372
|||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 TTCTCTATACTTTGGTTGTCGCACTTACATTCCCATTCTTCG 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5