BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09370.2
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 2276 0.0
> Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839
Length=3738
Score = 2276 bits (1232), Expect = 0.0
Identities = 1421/1508 (94%), Gaps = 29/1508 (2%)
Strand=Plus/Plus
Query 213 GATGGATCTTCAGGAAGAAACAGGTGAAGTGAAAATTGAGGATCAGTGTGTAGAAAATAA 272
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1851 GATGGATCTTCAGGAAGAAGCAGGTGAAGTGAAAATTGAGGATCAGTGTGTAGAAAACAA 1910
Query 273 GCAATCAACACCTGCTTCGTGCTCTTCTGTATCTGAAGGCAGTGCTGGTAGTTCCCACAA 332
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1911 GCAATCAACACCTGCTTCGTGCTCTTCTGTATCTGAAGGTAGTGCTGGTAGTTCTCACAA 1970
Query 333 GTCACCTACAATTGCAAG---TCCTGCCACAGTATCACCTACTCATAGGTACCTCGGGAG 389
|||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||
Sbjct 1971 GTCACCTACAATTGCAAGTCCTCCTGCCACAGTTTCACCAACTCATAGATACCTCGGGAG 2030
Query 390 GACGAGTGGCCCTATAAGGCGAGCCAAAGGTGGGTGGACTCCGGAAGAGGATGAGACATT 449
|||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 2031 GACGAGTGGCCCTATAAGGCGAGCGAAAGGTGGATGGACTCCGGCAGAGGATGAGACATT 2090
Query 450 GAGACAAGCAGTTGACACGTTTAAAGGCAAGAGCTGGAAGAACATAGCGAAATCTTTCCC 509
||||| |||||||| ||||| |||||| |||||||||||||| |||||||||| ||||||
Sbjct 2091 GAGACGAGCAGTTGGCACGTATAAAGGGAAGAGCTGGAAGAATATAGCGAAATTTTTCCC 2150
Query 510 TGATAGAACTGAAGTTCAATGCCTGCATCGGTGGCAGAAAGTTCTAAATCCAGACCTTAT 569
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2151 TGATAGAACTGAAGTTCAATGCCTGCACCGGTGGCAGAAAGTTCTAAATCCAGACCTTAT 2210
Query 570 TAAGGGACCTTGGACACATGAGGAGGATGAGAAAATCGTTGAACTGGTTGAAAAATACGG 629
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2211 TAAGGGACCTTGGACACAAGAGGAGGATGAGAAAATCGTTGAACTCGTTGAAAAATACGG 2270
Query 630 GCCTGCGAAATGGTCTATTATCGCACAGTCTTTACCAGGTCGAATTGGGAAGCAATGCCG 689
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2271 GCCTGCGAAATGGTCTGTTATCGCACAGTCTTTACCAGGTCGAATTGGGAAGCAATGTCG 2330
Query 690 AGAGAGGTGGCATAACCATTTGAATCCTGATATTAACAAGGATGCTTGGACCACAGAGGA 749
||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2331 AGAAAGGTGGCACAACCATTTGAATCCTGATATTAACAAGGATGCTTGGACCTCAGAGGA 2390
Query 750 AGAAGTAGCTCTCATGAATGCTCATCGAAGCCACGGAAACAAATGGGCTGAAATTGCTAA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 AGAAGTAGCTCTCATGAATGCTCATCGAAGCCACGGAAACAAATGGGCTGAAATTGCTAA 2450
Query 810 GGTCTTACCCGGCAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCATTGAAAAA 869
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2451 GGTCTTACCTGGCAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCACTGAAAAA 2510
Query 870 GAAGTCAGAATTCTACTTATTGACTGGTAGGTTACCACCACCAACAACAACAAGGAATGG 929
||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 2511 GAAGTCAGAATTCTACTCAATGACTGGTAGGTTACCACCACCAACAACAGCAAAGAACGG 2570
Query 930 TGTTCCTGATAGTGTAACCAAACGTTCATCGT-CTGCTCAGAAAAGGGTTTTTGGTTCAG 988
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 2571 TGTTCCTGATAGTGTAACTAAACGTTCATCGTCCT-CTCAGAAAAGGGTTTTTGGTTCAG 2629
Query 989 TTGCTCAAACCTCATCAGTAACTACAGATG-TAAACAATCTCGCTGAAGACGGAAATGGC 1047
|| ||||||||||||||| ||||||||| | |||||||| || ||||||| ||||||||
Sbjct 2630 TTACTCAAACCTCATCAGGAACTACAGA-GAAAAACAATCCCGATGAAGACAGAAATGGC 2688
Query 1048 CAAATAAACTCAT-CTGTTCCTGTCGAAGAAGTAGTAGCTGCTTCACGAATGACTAGTCT 1106
||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 2689 CAAATAAACTC-TACTGTTCCGGTCGAAGAAGTAGTAGCTGCTTCACGAATGACTGGTGT 2747
Query 1107 TAATGAGTATGCTCGTTCTCCTCAGTTGCCTAACCCAGAGCCATTGCCAGAGAATGGTGG 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2748 TAATGAGTATGCTCGTTCTCCTCAGTTGCCTAACCCAGAGCCATTGCCAGAGAATGGTGG 2807
Query 1167 AGCTGCAAATAATGGTTATCATCTGTACTACACGCCTCAAATAGACTATTACAGGGCGTC 1226
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2808 AGCTGCAAATAATGGTTATCATCTGTACTACACGCCTCAAATAGAGTATTACATGGCGTC 2867
Query 1227 AGAAGTGGATACGCAGCGTATGTATGGGAATGAATGTGGTTGCAGTCCAAGCGCATCACC 1286
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2868 AGAAGTGGATACGCAGCGTATGAATGGGTATGAATGTGGTTGCAGTCCAAGCGCATCACC 2927
Query 1287 AGTTAGCTTCTTCACTCCACCGCCGTGTAGGAATGTGCACAGTAACGGTTCGACTCCAAG 1346
|||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||||||||
Sbjct 2928 AGTTAGCTTCTTCACTCCACCGCCATGTAGAAATGCGTACAGTAACGGTTCAACTCCAAG 2987
Query 1347 AAGTCCTGAATCTTACCTGAGAGAAGCTGGTAGAACTTACCCAAACACACCATCCATATT 1406
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 2988 AAGTCCTGAATCTTACCTGAGAGAAGCTGCTAGAACTTACCCAAACACACCATCCATTTT 3047
Query 1407 CAGGAAAAGACGACCCAGGGTTGTTGTTCAGGATAACAACAACGCCAAGAAAACAGATGA 1466
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 3048 CAGGAAAAGACGACCCAGGGTTGTTGTTGAGGATAACAACAATGCCGAGAAAACAGATGA 3107
Query 1467 AGCTAAAGAGGTTGATCAAAAGGTGAATGATGGTAAGGATAGTTCAGA--G----A--T- 1517
|||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 3108 AGCTAAAGAGGTTGATCAAAAGGTGAATGATGGTAAGGATAGTTCAGAAAGCCCTAACTG 3167
Query 1518 TCAA-A-AT--AA-----TGGATCAAATGCTTACAATCTATCTCCTCCATATCGGATAAG 1568
| || | || || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 3168 TGAAGAGATTCAAAAGAATGGATCAAATGCTTACAATCTATCTCCTCCGTATCGGATAAG 3227
Query 1569 ATCGAAAAGGACAGCAGTTTTCAAATCAAGACAGCTTGAGTTTATATCTAG-AGAGGAAG 1627
||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3228 ATCGAAAAGAACAGCAGTTTTCAAATCAAGACAGCTTGAGTTTATATCT-GCAGAGGAAG 3286
Query 1628 AGAAAGCTGATGATGAAACCAAATCATCTGAGAAAGATATGTTGATTGATGGAGATTCTC 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3287 AGAAAGCTGATGATGAAACCAAATCATCTGAGAAAGATATGTTGATTGATGGAGATTCTC 3346
Query 1688 AACTCCTA 1695
||||||||
Sbjct 3347 AACTCCTA 3354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5