BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09380.1
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903806 jgi|Araly1|903806|Al_scaffold_0003_934 691 0.0
> Ahg903806 jgi|Araly1|903806|Al_scaffold_0003_934
Length=468
Score = 691 bits (374), Expect = 0.0
Identities = 437/467 (94%), Gaps = 6/467 (1%)
Strand=Plus/Plus
Query 1 ATGCGTTCAGGAGAGAAAAACATGGATTCTGTATTAACCAATAAGAACCCAATTATTTAT 60
|||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 1 ATGCGTTCAGGAGAGAAAAAAATGGATTCTGTATTAATCAATGAGAACCCAATTATTTAT 60
Query 61 CCGAAGAGAACACGGCGT-TATCGTACTGATCAGAGCAGTACCGATGAGTTTTCATCTAC 119
||||||||| || ||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CCGAAGAGACCAAGGCGTGT-TCGTACTGATCAGAGCAATACCGATGAGTTTTCATCTAC 119
Query 120 AAATCGTATAAGAGATATCAAAGATCCAGAGCATCCTGAA-CTTTCTTTGGAAGATCTCA 178
|||||||||||||||||||| |||||||||||||||| || |||||||| ||||| ||||
Sbjct 120 AAATCGTATAAGAGATATCAGAGATCCAGAGCATCCT-AAGCTTTCTTTAGAAGACCTCA 178
Query 179 ATGTTCTTACTGAAGAATCAGTTGAAGTTGATGATCACAAGAGTTACGTTAGAATTACAT 238
|| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ATATTCTTACAGAAGAATCAGTTGAAGTTGATGATGACAAGAGTTACGTTAGAATTACAT 238
Query 239 TCACTCCAACTCTTCCTCATTGTCACTTGCCAACCCATATTGGTCTTTGCATCTTAGTC- 297
|||||||||||||||| || |||||||||||||||| ||||||||||||| |||||| |
Sbjct 239 TCACTCCAACTCTTCCGCACTGTCACTTGCCAACCCCTATTGGTCTTTGCCTCTTAG-CA 297
Query 298 AAACTTGTGCAAAGCTTACCTGCTAGATTCAAGGTTGATGTGAGAGTAGCACCAGGGAGT 357
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAACTTGCACAAAGCCTACCTGCTAGATTCAAGGTTGATGTGAGAGTAGCACCAGGGAGT 357
Query 358 CATGATAAAGAGACGACAGTCAATAAACAACTTGGGGATAAAGAACGTGTGACTGCAGCA 417
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 358 CATGATAAAGAGAAGACAGTCAATAAACAACTTGGGGATAAAGAACGTGTGGCTGCAGGA 417
Query 418 TTAGAGAATCCCGAGTTGGTGGCTCTGCTTAATAAAATGATGCAAGT 464
||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 418 TTAGAGAATCCTGACTTGGTGGCTCTGCTTAATAAAATGATGCAAGT 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21901308086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5