BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09385.1 Length=1180 Score E Sequences producing significant alignments: (Bits) Value Ahg928609 jgi|Araly1|928609|scaffold_301066.1 580 6e-165 Ahg926261 jgi|Araly1|926261|scaffold_201822.1 451 5e-126 Ahg492715 jgi|Araly1|492715|fgenesh2_kg.7__2148__AT4G21605.1 412 2e-114 Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 257 1e-67 > Ahg928609 jgi|Araly1|928609|scaffold_301066.1 Length=1002 Score = 580 bits (314), Expect = 6e-165 Identities = 475/548 (87%), Gaps = 30/548 (5%) Strand=Plus/Plus Query 629 GGA-GTTTTTG-CAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTACAGAAGCGTA 686 ||| ||||||| | |||||||||||||||||||||||| || ||||||| ||||||| Sbjct 472 GGAGGTTTTTGATACATCCCTAGCGAGGAGATATTTGGA--CTTGAAGTACAAAAGCGTA 529 Query 687 GAGTATGAAGGAACTGTCTATGTAAAGTCTGAGGCAAAGGATGTGACTTACAAGCT-GCA 745 |||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| || Sbjct 530 GAGTATGAAGGATCTGTCTATGTGAAGTATGAGGCAAAGGATGCGACTTACAAGCTGGC- 588 Query 746 TAAAGGTAGATGGCGAACAGCAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATT 805 |||||||||||||||||| |||||| |||||||||||||||| ||| | || |||||| Sbjct 589 TAAAGGTAGATGGCGAACGGCAGACTTAGCGATAAATAAAGGATGG-G--GTACTTCATC 645 Query 806 ATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGATAGAAGAATCGAATG 865 ||| |||||||||||||||||||||||||||||||| |||| | ||||||| |||||||| Sbjct 646 ATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAATAGAAGGATCGAATG 705 Query 866 GTATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAAATTGCGTAGTTT 925 || ||||||||| |||||||| |||||||||||||||||| |||||||||||| || ||| Sbjct 706 GTGTGACTCCGACAAAAGATTGTGGACAACTTTGAAAGGTTTGGAAAAATTGCTTA-TTT 764 Query 926 TTCTCGTGTAAACTTGGTGAATTATGGTGGGAAAATGGCAGTTGTGTCGGTAGAGTATGT 985 ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 765 --CTCATGTAAACTTGGTGAATTATGGTGGGAAAATGGCTGTTGTGTGGGTAGAGTATGC 822 Query 986 GTTCGGTAAGAAGGA-G--GC-A--AAAATTTGGTGGGCGGAAATTGCGATTGAAAAACG 1039 || |||||||||||| | | | ||||||||||| ||||||||||||||||||||||| Sbjct 823 GTACGGTAAGAAGGATGAAGAGACGAAAATTTGGTGTGCGGAAATTGCGATTGAAAAACG 882 Query 1040 TC-A-AACG-GGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAACCAA 1096 | | || | || ||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 883 -CGAGAA-GAGG-GAGATTTGGGGAATGGTAAAGTGGTTTGACATTGTGTTTAGAACCAA 939 Query 1097 TGACAAGTCATAT-AGTTTAGAGCGTGCTCTTGCTACTACCATTTGATGGCTATGAATCA 1155 ||| | ||||| | ||| | || || ||||||||||||| |||||||| | ||| ||| Sbjct 940 TGA---GCCATATCATTTT-GCGCATGTTCTTGCTACTACCGTTTGATGGATCTGAGTCA 995 Query 1156 TGACTCAT 1163 ||| |||| Sbjct 996 TGA-TCAT 1002 Score = 540 bits (292), Expect = 1e-152 Identities = 349/377 (93%), Gaps = 2/377 (1%) Strand=Plus/Plus Query 238 GCCGCACCGAGAGATGTCTTTATGTGTGTTTCCGACTATTTACCGAATCTGA-CCAACTA 296 ||||||||||||| ||||||||||||||||| || |||||||||||| || | ||||||| Sbjct 111 GCCGCACCGAGAGTTGTCTTTATGTGTGTTTACGGCTATTTACCGAAACT-AGCCAACTA 169 Query 297 CGTTGGTTCACGCTCTGTCAGGGACCATTTAACTCCaaaaaaaTTTTGGTTCCGATTTCA 356 |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 170 CGTTGGTTCACGGTCTCTCAGGGACCATTTAACTCCAAAAAAAAATTGGTTCCGATTTCA 229 Query 357 TCTCCTAATTTTCCATCTGCATCCTGGTCGGATGCTGCAATAGTCGGTCCTAACATCTAT 416 |||||||||||||||||||||| |||||||| ||||| ||||| ||| |||| ||| || Sbjct 230 TCTCCTAATTTTCCATCTGCATTGTGGTCGGAGGCTGCTATAGTTGGTTCTAATATCCAT 289 Query 417 GCTATTGGAGGGTTAGTAAATAAGAATTATTCGTCTAGCGTCATGGTCATGGATTGTTAT 476 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 290 GCTATTGGAGGATTAGTAAATAAGAATGCTTCGTCTAGCGTCATGGTCATGGATTGTCAT 349 Query 477 TCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGT 536 ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 350 TCTCACACATGGCGTGAGGCACCAAGTATGCTTATGGCCCGTGAGTCCCACTCTGTTTGC 409 Query 537 GTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 596 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 ATCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 469 Query 597 ATGGAGGTTTTTGATAC 613 ||||||||||||||||| Sbjct 470 ATGGAGGTTTTTGATAC 486 Score = 169 bits (91), Expect = 5e-41 Identities = 105/112 (94%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 80 AAGAAGACAGATGACAATTCTGATGCTTCCTAATGATTTGCTATTCAACTGCTTAGCCCG 139 |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1 AAGAAGACGGATGACAATTCTGATGCTACCTGATGATTTGCTATTCAACTGCTTAGCCCG 60 Query 140 CATCTCAAGATTGTATTATCCAACTCTCTCGTTAGTCTCCACGAGATTCCGC 191 |||||||||||||| ||| ||||||||||| |||||||||| |||||||||| Sbjct 61 CATCTCAAGATTGTGTTACCCAACTCTCTCTTTAGTCTCCAAGAGATTCCGC 112 > Ahg926261 jgi|Araly1|926261|scaffold_201822.1 Length=1069 Score = 451 bits (244), Expect = 5e-126 Identities = 680/879 (77%), Gaps = 76/879 (9%) Strand=Plus/Plus Query 332 Caaaaa-aaTTTTGGTTCCGATTTCATCTCCTAATTTTCCATCTGCATCC-TGGTCGGAT 389 |||||| |||||||| |||||||||||||||||||||||||||||| | ||||| | Sbjct 220 CAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCATCTGCA-CGATGGTCAAAA 278 Query 390 GCTGCAATAGTCGGTCCTAACATCTA-TGCTATTGGAGGGTTAGTAA-ATAA---G--AA 442 | ||| || |||||||| ||||| | | || || || || | || |||| | || Sbjct 279 GTTGCGGCGGTTGGTCCTAATATCTACTCC-ATCGGCGGATTGG-AACATAACATGTCAA 336 Query 443 TTA----TTCGTCTAGCGTCATGGTCATGGATTGTTATTCTCACACATGGCGTGAGGCAC 498 || |||||||| |||||||| |||||| ||| ||||||||||||| ||||||| | Sbjct 337 GTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTCACACATGGTGTGAGGCCC 396 Query 499 CAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGTGTCCAT-GATGGGAAAATATAT 557 |||| ||||||||||||||| | ||| |||||||| | || | ||||||||||||||| Sbjct 397 CAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG-CCTTTGATGGGAAAATATAT 455 Query 558 GTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGGATGGAG-GTTTTTGATACGCA 616 ||||| |||| | ||||||||||||||||||||||||||| | ||||||||||| | Sbjct 456 GTAACGGGAGCAAACGAAAATCTTGATTCAACGAATTGGATGG-GTGTTTTTGATACAAA 514 Query 617 GACCCAAACTTGGGAGTTTTTGCAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTA 676 |||| ||||||||||| ||| ||||||||| || ||||| ||| ||| ||| ||| Sbjct 515 CACCCGAACTTGGGAGTATTTACAGATCCCTGGCAAGGAGCTATGCAGAGCCTCTCAGTT 574 Query 677 CAGAA-GCGTA-GAGTATGAAGGAAC-TGTCTATGTAAAGTCTGAGGCAAAGGATGTGAC 733 |||| ||||| | |||||||||||| | | ||||| | ||| ||| |||| |||| || Sbjct 575 -AGAAAGCGTATG-GTATGAAGGAACCT-TGTATGTGAGGTCCGAGAAAAAGAATGTAAC 631 Query 734 TTACAAGCTGCATAAAGGTAGATGGCGAACAGC-AGAC-ATAGCGATAAATAAAGGGTGG 791 ||||||||||||||||||||||||| ||| || ||| || || || ||| | || ||| Sbjct 632 TTACAAGCTGCATAAAGGTAGATGGAGAA-AGGTAGATTAT-GCTATGAATTATGGATGG 689 Query 792 TGATGTC-CTTCATTATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGA 850 | ||| || ||| ||| |||||||||||||||||||||||| |||| | || || Sbjct 690 -G--GTCGCT-CATCATC---TTATTGTGTGATAGAGAACGTGTTTTACCATAATTTTGG 742 Query 851 TAGAA-GA-ATCGAATGGTATGACTCCGAAAAAAGATTATGGACAACTT-TGAAAGGTGT 907 || | || || | |||| ||||||| ||||||||| ||||| || || |||| ||| | Sbjct 743 TACTACGATAT--ATTGGTTTGACTCCCAAAAAAGATCATGGAAAA-TTCTGAAGGGTTT 799 Query 908 GGAAAAATTGCGTA-GT-T-TTT-C--TC---GTGT-AA--ACTTGGTGAATTATGGTGG 955 ||||| ||| ||| || | ||| | | | | || |||||||| |||||||||| Sbjct 800 GGAAAGTTTGTGTAAGTCTCTTTGCAATAAAAGCGCCAAGTACTTGGTGGATTATGGTGG 859 Query 956 GAAAATGGCAGTTGTGTCGGTA-GAGTATGTGT-TCGGTAAGA-----AG-GAGGCAAAA 1007 |||||| || ||| ||| || | || ||||||| || ||| || ||| || Sbjct 860 GAAAATTGCGGTTTTGT-GGCAAGATTATGTGTCTCTC-AAGTTCCCTAGAGAGACATCG 917 Query 1008 ATTTGGTGGGCGGAAATTGCGATTGAAAAACGTC-AAA-CGGGAGAGATTTGGGGAATGC 1065 |||||||| ||||||||||||||||||||||| | ||| ||| ||||||||||| |||| Sbjct 918 ATTTGGTGTGCGGAAATTGCGATTGAAAAACG-CGAAAACGGC-GAGATTTGGGGGATGC 975 Query 1066 TAGAGTGGCTTGACATTGTGTTTAGAACCAATGA-CAAGTCATATAGTTTAGAGCGTGCT 1124 |||||||| |||||||||| |||| |||| || | | | || || | ||||| || |||| Sbjct 976 TAGAGTGGGTTGACATTGTCTTTACAACCGATAATCCA-TC-TA-A-TTTAGTGCATGCT 1031 Query 1125 CTTGCTACTACCATTTGATGGCTATGAATCATGACTCAT 1163 ||| |||||||| ||||||| ||||| |||||| |||| Sbjct 1032 CTTACTACTACCGTTTGATGAATATGAGTCATGA-TCAT 1069 > Ahg492715 jgi|Araly1|492715|fgenesh2_kg.7__2148__AT4G21605.1 Length=679 Score = 412 bits (223), Expect = 2e-114 Identities = 555/706 (79%), Gaps = 59/706 (8%) Strand=Plus/Plus Query 465 ATGGATTGTTATTCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCC 524 ||||||||| | ||||||||||| ||||||| ||||| ||||| || |||||| ||| | Sbjct 1 ATGGATTGTCGTACTCACACATGGGGTGAGGCCCCAAGAATGCAGGTAGCCCGTGTGTTC 60 Query 525 CACTCTGTTTGTGTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGAT 584 || ||| ||| ||| |||||| ||||||||||||| |||||| || || ||| ||| Sbjct 61 CAATCTACTTGCGTCTTTGATGGAAAAATATATGTAATAGGAGGCCGCGGAACTCTCGAT 120 Query 585 TCAACGAATTGGATGGAGGTTTTTGATACGCAGACCCAAACTTGGGAGTTTTTGCAGA-T 643 |||||||| |||||||||||||||||||| | ||||||||||||||||||||||| | | Sbjct 121 TCAACGAAATGGATGGAGGTTTTTGATACAAAAACCCAAACTTGGGAGTTTTTGCA-ATT 179 Query 644 CCCTAGCGAGGAG-ATATTTG-G-AGGCTCA-AAGTACAGA-AGCGTAGAGTATGAAGGA 698 ||||||||||||| | || || | ||||| | |||||| || ||| ||| |||||||||| Sbjct 180 CCCTAGCGAGGAGAAGATATGCGAAGGCT-ATAAGTAC-GAGAGCATAGTGTATGAAGGA 237 Query 699 ACTGTCTATGTAAAGTCTGA-G-GCAAAGGATGTGACTTACAAGCTGCATAAAGGTAGAT 756 || |||||||||| |||| | | |||| |||||||||||||||||||||||||||||| Sbjct 238 ACCGTCTATGTAAGGTCTCATGATCAAA--ATGTGACTTACAAGCTGCATAAAGGTAGAT 295 Query 757 GGCGAACAG-CAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATTATCCCATTAT 815 || | || ||||| ||||||| ||||| || ||| | || | | ||| ||| || | Sbjct 296 GGATAG-AGGCAGACTTAGCGATGAATAATGGATGGAGTTG-C-T-CATCATCT--TT-T 348 Query 816 TGTGTGATAGAGAACGTGTTCTACCGTTATACT-GATA-G--AA-G--A--ATCGAATGG 866 |||||||||||||||||||||||| ||| || | || | | || | | ||||| ||| Sbjct 349 TGTGTGATAGAGAACGTGTTCTACTGTTGTAATAGAAATGGTAACGGTATGATCGATTGG 408 Query 867 TATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAA-ATTGCGTAGTTT 925 |||||||| ||||||| | |||||||||||||||| || || ||||| ||||| || | Sbjct 409 TATGACTCTGAAAAAAAAGTATGGACAACTTTGAAGGG-GTTGAAAAGATTGCCTAAACT 467 Query 926 TTCTCG---TGT-AAACTTGGT-GAATTATGGTGGGAAAATGGCAGTTGT-GTCGGTAGA 979 || | | ||| ||| |||| || ||||||||| |||||| || || || || | | Sbjct 468 TTATGGGAATGTTAAA-TTGGCAGA-TTATGGTGGAAAAATGATGGT-GTTGT-GGAAAA 523 Query 980 GTATGTGTTCGGTAAGA-AGGAGGCAAAAATTTGGTGGGCGGAAATTGCGATTGAAAAAC 1038 | | || |||| || | | || |||| |||||||| |||||||| |||||||||||| Sbjct 524 G-A-GT-TTCG-TATGTTATGACCCAAAGATTTGGTGTGCGGAAATCACGATTGAAAAAC 579 Query 1039 GTCAA--ACGGGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAA-CCA 1095 | ||| | || |||||||||||| || ||||| ||| ||||| |||| | || || ||| Sbjct 580 G-CAAGGATGG-AGAGATTTGGGGGATACTAGAATGGTTTGACGTTGTATATA-AAGCCA 636 Query 1096 ATGAC-A--AGTCATATAGTTTAGAGCGTGCTCTTGCTACTACCAT 1138 ||| | || | || | |||||||| |||||||| ||||||||| Sbjct 637 ATGTGGATGAG-C-TACA-TTTAGAGCATGCTCTTGTTACTACCAT 679 > Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 Length=3738 Score = 257 bits (139), Expect = 1e-67 Identities = 296/367 (81%), Gaps = 29/367 (8%) Strand=Plus/Plus Query 642 ATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTACAGAAGCGTAGAGTATGAAG-GAAC 700 ||||||||||||||||||| |||||||||| |||||| || ||||||||||| || |||| Sbjct 3355 ATCCCTAGCGAGGAGATATATGGAGGCTCAGAGTACAAAATCGTAGAGTATG-AGAGAAC 3413 Query 701 TGTCTATGTAAAGTCTGAGGCAAAGGATGTGACTTACAAGCTGCATAAAGGTAGATGGCG 760 ||||||||| | || |||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 3414 TGTCTATGTGAGGTTTGAGGCGAAGAATGTGACTTACAAGCTGCATAAAGGTAGATGGCG 3473 Query 761 AACAG-CAGACATAGCGATAAATAAAGGGTGG-T-GATGTCCTTCATTATCCCAT-T-AT 815 || || ||||| | ||||||| | || ||| | || || ||| ||||| || | || Sbjct 3474 AA-AGGCAGACTTGGCGATAA-TGAATCATGGATTGAA-TC-TTCCTTATCT-ATATCAT 3528 Query 816 TGTGTGATAGAGAACGTGTTCTACCGTTATACTGATAGAAGAATCGAATGGTATGACTCC 875 | |||||||||||| || ||||||||||||| | | || || ||||| |||||||||||| Sbjct 3529 TTTGTGATAGAGAATGTTTTCTACCGTTATAATAAAAGGAGGATCGATTGGTATGACTCC 3588 Query 876 GAAA-AAAGATTATGGACAACTTTGAAAGGTGTGGAAAAATTGCGTAG---TTT-T---- 926 ||| |||||| ||||| ||||||||| ||| |||||| ||| | ||| ||| | Sbjct 3589 -AAAGAAAGATCATGGAAAACTTTGAAGGGTTTGGAAAGATTACCTAGCACTTTATCACG 3647 Query 927 T-CT---CGTGT-AAACTTGGTGAATTATGGTGGGAAAATGGCAGTTGTGTCGGTAGAGT 981 | || ||| | ||| |||| || ||||||||| ||||||| | || ||| || ||||| Sbjct 3648 TTCTAATCGTCTTAAA-TTGGCGA-TTATGGTGGAAAAATGGTACTTTTGTGGGAAGAGT 3705 Query 982 ATGTGTT 988 ||||||| Sbjct 3706 ATGTGTT 3712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44031969135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5