BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09385.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928609 jgi|Araly1|928609|scaffold_301066.1 580 6e-165
Ahg926261 jgi|Araly1|926261|scaffold_201822.1 451 5e-126
Ahg492715 jgi|Araly1|492715|fgenesh2_kg.7__2148__AT4G21605.1 412 2e-114
Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 257 1e-67
> Ahg928609 jgi|Araly1|928609|scaffold_301066.1
Length=1002
Score = 580 bits (314), Expect = 6e-165
Identities = 475/548 (87%), Gaps = 30/548 (5%)
Strand=Plus/Plus
Query 629 GGA-GTTTTTG-CAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTACAGAAGCGTA 686
||| ||||||| | |||||||||||||||||||||||| || ||||||| |||||||
Sbjct 472 GGAGGTTTTTGATACATCCCTAGCGAGGAGATATTTGGA--CTTGAAGTACAAAAGCGTA 529
Query 687 GAGTATGAAGGAACTGTCTATGTAAAGTCTGAGGCAAAGGATGTGACTTACAAGCT-GCA 745
|||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| ||
Sbjct 530 GAGTATGAAGGATCTGTCTATGTGAAGTATGAGGCAAAGGATGCGACTTACAAGCTGGC- 588
Query 746 TAAAGGTAGATGGCGAACAGCAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATT 805
|||||||||||||||||| |||||| |||||||||||||||| ||| | || ||||||
Sbjct 589 TAAAGGTAGATGGCGAACGGCAGACTTAGCGATAAATAAAGGATGG-G--GTACTTCATC 645
Query 806 ATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGATAGAAGAATCGAATG 865
||| |||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||
Sbjct 646 ATCTCATTATTGTGTGATAGAGAACGTGTTCTACCGCTATAATAATAGAAGGATCGAATG 705
Query 866 GTATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAAATTGCGTAGTTT 925
|| ||||||||| |||||||| |||||||||||||||||| |||||||||||| || |||
Sbjct 706 GTGTGACTCCGACAAAAGATTGTGGACAACTTTGAAAGGTTTGGAAAAATTGCTTA-TTT 764
Query 926 TTCTCGTGTAAACTTGGTGAATTATGGTGGGAAAATGGCAGTTGTGTCGGTAGAGTATGT 985
||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 765 --CTCATGTAAACTTGGTGAATTATGGTGGGAAAATGGCTGTTGTGTGGGTAGAGTATGC 822
Query 986 GTTCGGTAAGAAGGA-G--GC-A--AAAATTTGGTGGGCGGAAATTGCGATTGAAAAACG 1039
|| |||||||||||| | | | ||||||||||| |||||||||||||||||||||||
Sbjct 823 GTACGGTAAGAAGGATGAAGAGACGAAAATTTGGTGTGCGGAAATTGCGATTGAAAAACG 882
Query 1040 TC-A-AACG-GGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAACCAA 1096
| | || | || ||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 883 -CGAGAA-GAGG-GAGATTTGGGGAATGGTAAAGTGGTTTGACATTGTGTTTAGAACCAA 939
Query 1097 TGACAAGTCATAT-AGTTTAGAGCGTGCTCTTGCTACTACCATTTGATGGCTATGAATCA 1155
||| | ||||| | ||| | || || ||||||||||||| |||||||| | ||| |||
Sbjct 940 TGA---GCCATATCATTTT-GCGCATGTTCTTGCTACTACCGTTTGATGGATCTGAGTCA 995
Query 1156 TGACTCAT 1163
||| ||||
Sbjct 996 TGA-TCAT 1002
Score = 540 bits (292), Expect = 1e-152
Identities = 349/377 (93%), Gaps = 2/377 (1%)
Strand=Plus/Plus
Query 238 GCCGCACCGAGAGATGTCTTTATGTGTGTTTCCGACTATTTACCGAATCTGA-CCAACTA 296
||||||||||||| ||||||||||||||||| || |||||||||||| || | |||||||
Sbjct 111 GCCGCACCGAGAGTTGTCTTTATGTGTGTTTACGGCTATTTACCGAAACT-AGCCAACTA 169
Query 297 CGTTGGTTCACGCTCTGTCAGGGACCATTTAACTCCaaaaaaaTTTTGGTTCCGATTTCA 356
|||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 170 CGTTGGTTCACGGTCTCTCAGGGACCATTTAACTCCAAAAAAAAATTGGTTCCGATTTCA 229
Query 357 TCTCCTAATTTTCCATCTGCATCCTGGTCGGATGCTGCAATAGTCGGTCCTAACATCTAT 416
|||||||||||||||||||||| |||||||| ||||| ||||| ||| |||| ||| ||
Sbjct 230 TCTCCTAATTTTCCATCTGCATTGTGGTCGGAGGCTGCTATAGTTGGTTCTAATATCCAT 289
Query 417 GCTATTGGAGGGTTAGTAAATAAGAATTATTCGTCTAGCGTCATGGTCATGGATTGTTAT 476
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 290 GCTATTGGAGGATTAGTAAATAAGAATGCTTCGTCTAGCGTCATGGTCATGGATTGTCAT 349
Query 477 TCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGT 536
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 350 TCTCACACATGGCGTGAGGCACCAAGTATGCTTATGGCCCGTGAGTCCCACTCTGTTTGC 409
Query 537 GTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ATCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGG 469
Query 597 ATGGAGGTTTTTGATAC 613
|||||||||||||||||
Sbjct 470 ATGGAGGTTTTTGATAC 486
Score = 169 bits (91), Expect = 5e-41
Identities = 105/112 (94%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 80 AAGAAGACAGATGACAATTCTGATGCTTCCTAATGATTTGCTATTCAACTGCTTAGCCCG 139
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1 AAGAAGACGGATGACAATTCTGATGCTACCTGATGATTTGCTATTCAACTGCTTAGCCCG 60
Query 140 CATCTCAAGATTGTATTATCCAACTCTCTCGTTAGTCTCCACGAGATTCCGC 191
|||||||||||||| ||| ||||||||||| |||||||||| ||||||||||
Sbjct 61 CATCTCAAGATTGTGTTACCCAACTCTCTCTTTAGTCTCCAAGAGATTCCGC 112
> Ahg926261 jgi|Araly1|926261|scaffold_201822.1
Length=1069
Score = 451 bits (244), Expect = 5e-126
Identities = 680/879 (77%), Gaps = 76/879 (9%)
Strand=Plus/Plus
Query 332 Caaaaa-aaTTTTGGTTCCGATTTCATCTCCTAATTTTCCATCTGCATCC-TGGTCGGAT 389
|||||| |||||||| |||||||||||||||||||||||||||||| | ||||| |
Sbjct 220 CAAAAAGGATTTTGGTCCCGATTTCATCTCCTAATTTTCCATCTGCA-CGATGGTCAAAA 278
Query 390 GCTGCAATAGTCGGTCCTAACATCTA-TGCTATTGGAGGGTTAGTAA-ATAA---G--AA 442
| ||| || |||||||| ||||| | | || || || || | || |||| | ||
Sbjct 279 GTTGCGGCGGTTGGTCCTAATATCTACTCC-ATCGGCGGATTGG-AACATAACATGTCAA 336
Query 443 TTA----TTCGTCTAGCGTCATGGTCATGGATTGTTATTCTCACACATGGCGTGAGGCAC 498
|| |||||||| |||||||| |||||| ||| ||||||||||||| ||||||| |
Sbjct 337 GTAAGGCTTCGTCTAACGTCATGGCCATGGACTGTCGTTCTCACACATGGTGTGAGGCCC 396
Query 499 CAAGTATGCATGTGGCCCGTTTGTCCCACTCTGTTTGTGTCCAT-GATGGGAAAATATAT 557
|||| ||||||||||||||| | ||| |||||||| | || | |||||||||||||||
Sbjct 397 CAAGCATGCATGTGGCCCGTGAATTCCATTCTGTTTGCG-CCTTTGATGGGAAAATATAT 455
Query 558 GTAACAGGAGGTTGCAAAAATCTTGATTCAACGAATTGGATGGAG-GTTTTTGATACGCA 616
||||| |||| | ||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 456 GTAACGGGAGCAAACGAAAATCTTGATTCAACGAATTGGATGG-GTGTTTTTGATACAAA 514
Query 617 GACCCAAACTTGGGAGTTTTTGCAGATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTA 676
|||| ||||||||||| ||| ||||||||| || ||||| ||| ||| ||| |||
Sbjct 515 CACCCGAACTTGGGAGTATTTACAGATCCCTGGCAAGGAGCTATGCAGAGCCTCTCAGTT 574
Query 677 CAGAA-GCGTA-GAGTATGAAGGAAC-TGTCTATGTAAAGTCTGAGGCAAAGGATGTGAC 733
|||| ||||| | |||||||||||| | | ||||| | ||| ||| |||| |||| ||
Sbjct 575 -AGAAAGCGTATG-GTATGAAGGAACCT-TGTATGTGAGGTCCGAGAAAAAGAATGTAAC 631
Query 734 TTACAAGCTGCATAAAGGTAGATGGCGAACAGC-AGAC-ATAGCGATAAATAAAGGGTGG 791
||||||||||||||||||||||||| ||| || ||| || || || ||| | || |||
Sbjct 632 TTACAAGCTGCATAAAGGTAGATGGAGAA-AGGTAGATTAT-GCTATGAATTATGGATGG 689
Query 792 TGATGTC-CTTCATTATCCCATTATTGTGTGATAGAGAACGTGTTCTACCGTTATACTGA 850
| ||| || ||| ||| |||||||||||||||||||||||| |||| | || ||
Sbjct 690 -G--GTCGCT-CATCATC---TTATTGTGTGATAGAGAACGTGTTTTACCATAATTTTGG 742
Query 851 TAGAA-GA-ATCGAATGGTATGACTCCGAAAAAAGATTATGGACAACTT-TGAAAGGTGT 907
|| | || || | |||| ||||||| ||||||||| ||||| || || |||| ||| |
Sbjct 743 TACTACGATAT--ATTGGTTTGACTCCCAAAAAAGATCATGGAAAA-TTCTGAAGGGTTT 799
Query 908 GGAAAAATTGCGTA-GT-T-TTT-C--TC---GTGT-AA--ACTTGGTGAATTATGGTGG 955
||||| ||| ||| || | ||| | | | | || |||||||| ||||||||||
Sbjct 800 GGAAAGTTTGTGTAAGTCTCTTTGCAATAAAAGCGCCAAGTACTTGGTGGATTATGGTGG 859
Query 956 GAAAATGGCAGTTGTGTCGGTA-GAGTATGTGT-TCGGTAAGA-----AG-GAGGCAAAA 1007
|||||| || ||| ||| || | || ||||||| || ||| || ||| ||
Sbjct 860 GAAAATTGCGGTTTTGT-GGCAAGATTATGTGTCTCTC-AAGTTCCCTAGAGAGACATCG 917
Query 1008 ATTTGGTGGGCGGAAATTGCGATTGAAAAACGTC-AAA-CGGGAGAGATTTGGGGAATGC 1065
|||||||| ||||||||||||||||||||||| | ||| ||| ||||||||||| ||||
Sbjct 918 ATTTGGTGTGCGGAAATTGCGATTGAAAAACG-CGAAAACGGC-GAGATTTGGGGGATGC 975
Query 1066 TAGAGTGGCTTGACATTGTGTTTAGAACCAATGA-CAAGTCATATAGTTTAGAGCGTGCT 1124
|||||||| |||||||||| |||| |||| || | | | || || | ||||| || ||||
Sbjct 976 TAGAGTGGGTTGACATTGTCTTTACAACCGATAATCCA-TC-TA-A-TTTAGTGCATGCT 1031
Query 1125 CTTGCTACTACCATTTGATGGCTATGAATCATGACTCAT 1163
||| |||||||| ||||||| ||||| |||||| ||||
Sbjct 1032 CTTACTACTACCGTTTGATGAATATGAGTCATGA-TCAT 1069
> Ahg492715 jgi|Araly1|492715|fgenesh2_kg.7__2148__AT4G21605.1
Length=679
Score = 412 bits (223), Expect = 2e-114
Identities = 555/706 (79%), Gaps = 59/706 (8%)
Strand=Plus/Plus
Query 465 ATGGATTGTTATTCTCACACATGGCGTGAGGCACCAAGTATGCATGTGGCCCGTTTGTCC 524
||||||||| | ||||||||||| ||||||| ||||| ||||| || |||||| ||| |
Sbjct 1 ATGGATTGTCGTACTCACACATGGGGTGAGGCCCCAAGAATGCAGGTAGCCCGTGTGTTC 60
Query 525 CACTCTGTTTGTGTCCATGATGGGAAAATATATGTAACAGGAGGTTGCAAAAATCTTGAT 584
|| ||| ||| ||| |||||| ||||||||||||| |||||| || || ||| |||
Sbjct 61 CAATCTACTTGCGTCTTTGATGGAAAAATATATGTAATAGGAGGCCGCGGAACTCTCGAT 120
Query 585 TCAACGAATTGGATGGAGGTTTTTGATACGCAGACCCAAACTTGGGAGTTTTTGCAGA-T 643
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||| | |
Sbjct 121 TCAACGAAATGGATGGAGGTTTTTGATACAAAAACCCAAACTTGGGAGTTTTTGCA-ATT 179
Query 644 CCCTAGCGAGGAG-ATATTTG-G-AGGCTCA-AAGTACAGA-AGCGTAGAGTATGAAGGA 698
||||||||||||| | || || | ||||| | |||||| || ||| ||| ||||||||||
Sbjct 180 CCCTAGCGAGGAGAAGATATGCGAAGGCT-ATAAGTAC-GAGAGCATAGTGTATGAAGGA 237
Query 699 ACTGTCTATGTAAAGTCTGA-G-GCAAAGGATGTGACTTACAAGCTGCATAAAGGTAGAT 756
|| |||||||||| |||| | | |||| ||||||||||||||||||||||||||||||
Sbjct 238 ACCGTCTATGTAAGGTCTCATGATCAAA--ATGTGACTTACAAGCTGCATAAAGGTAGAT 295
Query 757 GGCGAACAG-CAGACATAGCGATAAATAAAGGGTGGTGATGTCCTTCATTATCCCATTAT 815
|| | || ||||| ||||||| ||||| || ||| | || | | ||| ||| || |
Sbjct 296 GGATAG-AGGCAGACTTAGCGATGAATAATGGATGGAGTTG-C-T-CATCATCT--TT-T 348
Query 816 TGTGTGATAGAGAACGTGTTCTACCGTTATACT-GATA-G--AA-G--A--ATCGAATGG 866
|||||||||||||||||||||||| ||| || | || | | || | | ||||| |||
Sbjct 349 TGTGTGATAGAGAACGTGTTCTACTGTTGTAATAGAAATGGTAACGGTATGATCGATTGG 408
Query 867 TATGACTCCGAAAAAAGATTATGGACAACTTTGAAAGGTGTGGAAAA-ATTGCGTAGTTT 925
|||||||| ||||||| | |||||||||||||||| || || ||||| ||||| || |
Sbjct 409 TATGACTCTGAAAAAAAAGTATGGACAACTTTGAAGGG-GTTGAAAAGATTGCCTAAACT 467
Query 926 TTCTCG---TGT-AAACTTGGT-GAATTATGGTGGGAAAATGGCAGTTGT-GTCGGTAGA 979
|| | | ||| ||| |||| || ||||||||| |||||| || || || || | |
Sbjct 468 TTATGGGAATGTTAAA-TTGGCAGA-TTATGGTGGAAAAATGATGGT-GTTGT-GGAAAA 523
Query 980 GTATGTGTTCGGTAAGA-AGGAGGCAAAAATTTGGTGGGCGGAAATTGCGATTGAAAAAC 1038
| | || |||| || | | || |||| |||||||| |||||||| ||||||||||||
Sbjct 524 G-A-GT-TTCG-TATGTTATGACCCAAAGATTTGGTGTGCGGAAATCACGATTGAAAAAC 579
Query 1039 GTCAA--ACGGGAGAGATTTGGGGAATGCTAGAGTGGCTTGACATTGTGTTTAGAA-CCA 1095
| ||| | || |||||||||||| || ||||| ||| ||||| |||| | || || |||
Sbjct 580 G-CAAGGATGG-AGAGATTTGGGGGATACTAGAATGGTTTGACGTTGTATATA-AAGCCA 636
Query 1096 ATGAC-A--AGTCATATAGTTTAGAGCGTGCTCTTGCTACTACCAT 1138
||| | || | || | |||||||| |||||||| |||||||||
Sbjct 637 ATGTGGATGAG-C-TACA-TTTAGAGCATGCTCTTGTTACTACCAT 679
> Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839
Length=3738
Score = 257 bits (139), Expect = 1e-67
Identities = 296/367 (81%), Gaps = 29/367 (8%)
Strand=Plus/Plus
Query 642 ATCCCTAGCGAGGAGATATTTGGAGGCTCAAAGTACAGAAGCGTAGAGTATGAAG-GAAC 700
||||||||||||||||||| |||||||||| |||||| || ||||||||||| || ||||
Sbjct 3355 ATCCCTAGCGAGGAGATATATGGAGGCTCAGAGTACAAAATCGTAGAGTATG-AGAGAAC 3413
Query 701 TGTCTATGTAAAGTCTGAGGCAAAGGATGTGACTTACAAGCTGCATAAAGGTAGATGGCG 760
||||||||| | || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 3414 TGTCTATGTGAGGTTTGAGGCGAAGAATGTGACTTACAAGCTGCATAAAGGTAGATGGCG 3473
Query 761 AACAG-CAGACATAGCGATAAATAAAGGGTGG-T-GATGTCCTTCATTATCCCAT-T-AT 815
|| || ||||| | ||||||| | || ||| | || || ||| ||||| || | ||
Sbjct 3474 AA-AGGCAGACTTGGCGATAA-TGAATCATGGATTGAA-TC-TTCCTTATCT-ATATCAT 3528
Query 816 TGTGTGATAGAGAACGTGTTCTACCGTTATACTGATAGAAGAATCGAATGGTATGACTCC 875
| |||||||||||| || ||||||||||||| | | || || ||||| ||||||||||||
Sbjct 3529 TTTGTGATAGAGAATGTTTTCTACCGTTATAATAAAAGGAGGATCGATTGGTATGACTCC 3588
Query 876 GAAA-AAAGATTATGGACAACTTTGAAAGGTGTGGAAAAATTGCGTAG---TTT-T---- 926
||| |||||| ||||| ||||||||| ||| |||||| ||| | ||| ||| |
Sbjct 3589 -AAAGAAAGATCATGGAAAACTTTGAAGGGTTTGGAAAGATTACCTAGCACTTTATCACG 3647
Query 927 T-CT---CGTGT-AAACTTGGTGAATTATGGTGGGAAAATGGCAGTTGTGTCGGTAGAGT 981
| || ||| | ||| |||| || ||||||||| ||||||| | || ||| || |||||
Sbjct 3648 TTCTAATCGTCTTAAA-TTGGCGA-TTATGGTGGAAAAATGGTACTTTTGTGGGAAGAGT 3705
Query 982 ATGTGTT 988
|||||||
Sbjct 3706 ATGTGTT 3712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5