BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09390.1

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928610 jgi|Araly1|928610|scaffold_301067.1                        634    0.0  


> Ahg928610 jgi|Araly1|928610|scaffold_301067.1
Length=552

 Score =  634 bits (343),  Expect = 0.0
 Identities = 462/513 (90%), Gaps = 34/513 (7%)
 Strand=Plus/Plus

Query  22   TTTGAATTTTCTCGAGAAAAATGTCTTGCTGTGGAGGAAACTGCGGATGTGGATCTGGCT  81
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  58   TTTGAATTTTCTCGAGAAAAATGTCTTGCTGTGGAGGAAACTGCGGTTGTGGATCTGGCT  117

Query  82   GCAAGTGCGGCAACGGTTGTGGAGGTTGCAAAATGTACCCTGACTTGGGATTCTCCGGCG  141
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  GCAAGTGCGGCAACGGATGTGGAGGTTGCAAAATGTACCCTGACTTGGGATTCTCCGGCG  177

Query  142  AGACAACCACAACTGAGACTTTTGTCTTGGGCGTTGCACCGGCGATGAAGAATCAGTACG  201
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  178  AGACGACCACAACTGAGACTTTTGTCTTGGGCGTTGCACCGGCGATGAAGAATCAATACG  237

Query  202  AGGCTTCAGGGGAGAGTAACAACGCTGAGAACGATGCTTGCAAGTGTGGATCTGACTGCA  261
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  AGGCTTCAGGCGAGAGTAACAACGCTGAGAACGATGCTTGCAAGTGTGGATCTGACTGCA  297

Query  262  AGTGTGATCCTTGCACCTGCAAGTGAAGAAGCCTTTTTAA---ATAAG---CAGAGATAA  315
            ||||||| ||||||||||| || ||||||  |||||||||   |||||   |||||||||
Sbjct  298  AGTGTGACCCTTGCACCTGTAAATGAAGAC-CCTTTTTAATTTATAAGAAGCAGAGATAA  356

Query  316  TCGAGTCTCTTTAATTAATTAAGTTATTCAATAAGTAAACCATATATAGGATGGTGTTTT  375
            |||||||| || | |||||||||||||| ||||||||| || | || |   ||||||| |
Sbjct  357  TCGAGTCT-TT-ATTTAATTAAGTTATTTAATAAGTAA-CC-T-TA-A---TGGTGTTCT  407

Query  376  TAGGTTTGGTTTATGTGTAATAATGGCT------T-CAGCTTATCTTTTAGCCGATCATT  428
             ||| |||||||||||||||||||||||      | ||||||||||||||||||| || |
Sbjct  408  -AGGATTGGTTTATGTGTAATAATGGCTGCAGCCTGCAGCTTATCTTTTAGCCGA-CAAT  465

Query  429  -GTCTTTTGTGTTTGTTTTGATCA-TATCTTTTAGATGTCTAGCAACTCTGCCATGTGAT  486
             ||||||||||| ||||||||||| ||||||||||||||||  |   |  ||||||||||
Sbjct  466  AGTCTTTTGTGTGTGTTTTGATCAATATCTTTTAGATGTCT--C---T--GCCATGTGAT  518

Query  487  GAGTTTGTACTTCCAGTGGAATGATAATAATAT  519
            ||||||||||||||||| ||||||||| |||||
Sbjct  519  GAGTTTGTACTTCCAGTTGAATGATAAAAATAT  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19611972746


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5