BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09400.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478259 jgi|Araly1|478259|fgenesh2_kg.3__960__AT3G09400.1 1236 0.0
Ahg349536 jgi|Araly1|349536|fgenesh1_pg.C_scaffold_6000129 614 9e-175
> Ahg478259 jgi|Araly1|478259|fgenesh2_kg.3__960__AT3G09400.1
Length=1968
Score = 1236 bits (669), Expect = 0.0
Identities = 779/833 (94%), Gaps = 4/833 (0%)
Strand=Plus/Plus
Query 1123 ATTAACCACAAAGACGTTCTTAGAGCTCTTCAACAAGCGTTGGAGAAAACAGAAGAATCG 1182
||| || ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 1138 ATTGACAACAAAGACGTTCTTAGAGCTCTTCAGCAAGCGTTGAAGAAAACAGAGGAATCG 1197
Query 1183 TTTGATCTGATGGTTAATGAGAATCCAGAATTAGCCTTGATGGGATCCTGCGTTCTTGTG 1242
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 TTTGATCTGATGGTTAGTGAGAATCCAGAATTAGCCTTGATGGGATCTTGCGTTCTTGTG 1257
Query 1243 ACATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTTCTT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 ACATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTT-TT 1316
Query 1303 -GCTCGAAGACCTAATGTCGAGAA-AATGAAGATGCAAAAGGAGCTTGAGAGAGTCAAAG 1360
||| ||||||| || | | || || ||| ||||||||||| ||||||||| ||||||
Sbjct 1317 AGCTAGAAGACCGGATCTTGGGATGAA-GAAAATGCAAAAGGACCTTGAGAGAATCAAAG 1375
Query 1361 AAGAAAGTCCATTAGAGACCTTGTTCATCACCGAAAGAGGACTGAGTCTTCTGGTCCCTG 1420
|||| |||||||||||||| |||||| |||| ||||||||| |||||||| |||| |||
Sbjct 1376 AAGAGAGTCCATTAGAGACATTGTTCGTCACAGAAAGAGGATTGAGTCTTTTGGTTCCTA 1435
Query 1421 TTCAGCTCAATAAGGAACATAGCACAAGTGTTGAAGAGGAAGTGAGAAGAATCAAGAAGG 1480
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1436 TTCAGCTCAATAAGGAACATAGCACAAGTGTTGATGAGGAAGTGACAAGAATCAAGAAGG 1495
Query 1481 AACATCCTGATGATATATTAGCGATAGAGAATAATAGAGTGAAAGGTTATCTCAAAGTCA 1540
|||||||||||||| ||| || ||||||||| ||||||| |||||||||||||| ||||
Sbjct 1496 AACATCCTGATGATGCATTGGCAATAGAGAATGATAGAGTAAAAGGTTATCTCAAGGTCA 1555
Query 1541 CTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAACGAGGCGCTTCTAGAGA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1556 CTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAACGAGGCGCTTCTCGAGA 1615
Query 1601 TGTTCAGAATAGACTACGTCGGAACATCGCCGTACATCACGTGCTCTCCGTCGCTACACC 1660
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1616 TGTTTAGAATAGACTACGTCGGAACATCACCGTACATCACGTGCTCTCCGTCGCTACACC 1675
Query 1661 ACCATAGACTCTCATCACGTGACAAATTCCTAATCCTCTCATCCGATGGACTATACGAAT 1720
|||| |||||| |||||||||||||||| || |||||||| ||||| ||| |||||||||
Sbjct 1676 ACCACAGACTCACATCACGTGACAAATTTCTCATCCTCTCCTCCGACGGATTATACGAAT 1735
Query 1721 ACTTCTCGAACGAGGAAGCCATCTTCGAGGTTGACTCATTCATCTCAGCCTTCCCTGAAG 1780
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1736 ACTTCTCGAACGAGGAAGCCATCTTCGAGGTCGACTCATTCATATCAGCCTTCCCTGAAG 1795
Query 1781 GCGATCCTGCTCAACATCTCATTCAAGAAGTCCTCCTTAGAGCTGCCAAGAAATATGGTA 1840
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1796 GCGATCCTGCTCAACATCTCATTCAAGAAGTCCTCCTTAGAGCCGCCAAGAAATATGGCA 1855
Query 1841 TGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGTCGGAGGTATCATGACGATG 1900
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1856 TGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGCCGGAGGTATCATGATGATG 1915
Query 1901 TTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGATCTTCCATGTGA 1953
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGATCTTCCATGTGA 1968
Score = 1170 bits (633), Expect = 0.0
Identities = 982/1143 (86%), Gaps = 53/1143 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAATGGAGTCGCGAGTTTTAGTGGCTGTTGCGCCGGAACCACCGCCGGAGAAATT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGAAACAGAGTCGCGAGTTTTAGTGGCTGTTGCGCCGGAACCACCGCCGGAAAAATT 60
Query 61 TCCGGTCGATACGTA-ACCGGAGTAGGACTGGTTCAAGAAAACCTCGGCCACTCTTTCTG 119
||| ||||| ||| | ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 TCCAGTCGAAACG-ATGTTGGAGTCGGACTGATTCAAGAAAACCTCGGCCACTCTTTCTG 119
Query 120 CTACGTTCGTCCAGTTCTCACCGGATCAAAATCTTCTTTCCCGCCGGAACCGCCCCTCCG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTACGTTCGTCCAGTTCTCACCGGATCAAAATCTTCTTTCCCGCCGGAACCGCCCCTCCA 179
Query 180 ACCCGACCCGATACCCGGAACCACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTTAG 239
||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 180 ACCGGACCCGATACCCGGAACCACCACCACTTTTCGTTCAATCTCCGGCGCCTCCGTTAG 239
Query 240 CGCCAATACTTCAACCGCGCTCTCAACTTCT-CTGTCAACAGATACGTCTGGAATAGCCT 298
||||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| ||||||
Sbjct 240 CGCCAATACTTCAACGGCGCTTTCAGCTTCTTC-GTCAACAGACGCGTCTGGATTAGCCT 298
Query 299 CCGCGTTCGAGAGTTCCAATAGATTCGCTTCCTTGCCTCTCCAGCCTGTACCACGTAGTC 358
| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct 299 CTGCGTTCGAGAGCTCCAATAGATTCGCCTCCTTGCCACTCCAGCCTGTGCCACGCGGTC 358
Query 359 CTATTAAGAAATCGGATCACGGGTCGGGTCTATTCGAACGCCGGTTCTTATCCGGTCCGA 418
| || || ||| ||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 359 CGATAAAAAAACCGGTTCACGTGTCGGGTCAATTCGAACGCCGGTTCTTATCCGGTCCGA 418
Query 419 TTGAAAGCGGTTTGGTTTCAGGGAAGAAGACCAAGGAGAAAGCAAAACTGAAGAAAAGTG 478
| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TCGAAAGCGGGTTGGTTTCAGGGAAGAAGAAGAAGGAGAAAGCAAAACTGAAGAAAAGTG 478
Query 479 GAAGCAAATCCTTTACGAAACCAAAAC-TGAAGAA-AAGTGA---A-AG-CAAAATC-TT 530
|||||||||| ||||||| |||||||| | || || || | | | ||||| | ||
Sbjct 479 GAAGCAAATCATTTACGATACCAAAACCT-AACAATAAATTTCTTACATTCAAAAACGTT 537
Query 531 TACATTCAAAAAC-GTTTTC-ACCAACTTATCTTGTTCGAAGAAGAGTGTGATT-AAGCC 587
| || | || | | | || | |||||||||||||||||||||||| ||||| || ||
Sbjct 538 TTCA--CGAAT-CTGGTATCTAACAACTTATCTTGTTCGAAGAAGAGCGTGATCGAA-CC 593
Query 588 AATCAACGGTTTCGATTCATTCGATGGATCATCAGATACTGATC--GTTACATACCTGAG 645
|||||| || ||||||||| || | |||||||||| | |||| | || | ||||||
Sbjct 594 GATCAACTATTCCGATTCATTTGACGAATCATCAGATTCCGATCAAGGTAGA--CCTGAG 651
Query 646 ATCAACTCCTTAAGCACGATTGTGAGCAGCCATGAGAAACCTAGAATCAAAGAAGAAGAA 705
| ||| | || | |||||||| | |||||||| ||||| |||| || | |||||||||
Sbjct 652 AACAATTACTCAGGCACGATTCTAAGCAGCCACGAGAACCCTAAAACC---GAAGAAGAA 708
Query 706 GATAAGACTGAGTCTGCTTTAGAGGAGCCAAAGATACAATGGGCACAGGGGAAAGCAGGT 765
| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 709 -A-AA-ACTGAGTCTGCTTTAGATGAGCCAAAGATTCAATGGGCGCAGGGGAAAGCAGGG 765
Query 766 GAAGATCGAGTACACGTCATCCTCTCCGAGGAAAACGGTTGGCTTTTCGTCGGAATTTAC 825
||||||||||| |||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 766 GAAGATCGAGTTCACGTCATCCTCTCGGAAGAAAACGGTTGGCTTTTCGTCGGGATATAC 825
Query 826 GACGGATTCAGCGGTCCAGATCCACCGGATTATCTTATCAAAAATCTCTACACTGCCGTG 885
|||||||||| |||||| ||| | |||||||||||| |||| ||||||||||| || |||
Sbjct 826 GACGGATTCAACGGTCCTGATGCGCCGGATTATCTTCTCAACAATCTCTACACCGCTGTG 885
Query 886 CTCAGAGAGCTCAAAGGGTTACTATGGATCGACAAAGGTGAATCATATAATAGAAACGGC 945
||| |||||||||||| ||| | ||||| |||||| | | | | | || | |
Sbjct 886 CTCGGAGAGCTCAAAGAGTTGCAATGGAACGACAA-G-T-A-TGA-AT--------C--C 930
Query 946 GAGTCCAACATCGAGAAACAGAGTACAGTCGAGCATGCATCCGATTCGGATCAAGAAAAC 1005
|| | | | | | ||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 931 GAAT--ATC-T--ACAAA-AGAGTTCGGTCGAGCATGCATCCGATTCGGATCAAGAAAAC 984
Query 1006 TGCCCTGTGATGAATGGAAACGAT-GTTGCTTGTGGATCAAGAAACATTACGAGTGACGT 1064
|||| || ||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 985 TGCCATGCGATGAATGGAAAC-ATTGTTGCTTGTGGATCAAGAAACATAACGAGTGACGT 1043
Query 1065 GAAGAAGTTGCAATGGAGGTGCGAGTGGGAGCATAACTCAAGCAACAAGTCTAATAATAT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GAAGAAGTTGCAATGGAGGTGCGAGTGGGAGCATAACTCAAGCAACAAGTCTAATAATAT 1103
Query 1125 TAA 1127
|||
Sbjct 1104 TAA 1106
> Ahg349536 jgi|Araly1|349536|fgenesh1_pg.C_scaffold_6000129
Length=2028
Score = 614 bits (332), Expect = 9e-175
Identities = 646/793 (81%), Gaps = 39/793 (5%)
Strand=Plus/Plus
Query 1185 TGATCTGATGGTTAATGAGAATCCAGAATTAGCCTTGATGGGATCCTGCGTTCTTGTGAC 1244
||||| |||||||| ||||||||||||||||| |||||||| || || ||||| |||||
Sbjct 1251 TGATCAAATGGTTAAAGAGAATCCAGAATTAGCATTGATGGGTTCTTGTGTTCTCGTGAC 1310
Query 1245 ATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTTCTT-- 1302
|||||||||||||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 1311 ATTGATGAAAGGAGAAGATGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTT-TTAG 1369
Query 1303 GCTC-GAAGACCTAATGT--CGA---GAAAATGAAGATGCAAAAGGAGCTT-GAGAGAGT 1355
|| | ||| ||||||| | | | | | | |||| |||||||||| || |||||| |
Sbjct 1370 GC-CGGAA-ACCTAATTTAGCCACCGGGAGA--AAGAGGCAAAAGGAG-TTGGAGAGAAT 1424
Query 1356 CAA-AGAAGAAAGTCCATTAG-AGACCTTG---TTCATCACCGAA-AGAGGACT--G-AG 1406
|| |||||| ||| |||||| ||| | || | | ||| ||| | | | |
Sbjct 1425 -AAGAGAAGATAGTTCATTAGAAGATAAAGAAATT-TTGA-TGAATGGAGCAATGCGTAA 1481
Query 1407 T-CTTCTGGTCCCTGTTCAGCTCAATAAGGAACATAGCACAAGTGTTGAAGAGGAAGTGA 1465
| ||| |||| ||| | || || || | ||||||||||||||| |||||||||||||||
Sbjct 1482 TACTT-TGGTTCCTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGA 1540
Query 1466 GAAGAATCAAGAAGGAACATCCTGATGAT-ATAT-TAGC-GATAGAGAATAATAGAGTGA 1522
||||||||||||||||||||||||| ||| || | | || | |||||||| ||||||| |
Sbjct 1541 GAAGAATCAAGAAGGAACATCCTGACGATGAT-TGT-GCAG-TAGAGAATGATAGAGTTA 1597
Query 1523 AAGGTTATCTCAAAGTCACTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGA 1582
|||||||||| || ||||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 1598 AAGGTTATCTTAAGGTCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGA 1657
Query 1583 ACGAGGCGCTTCTAGAGATGTTCAGAATAGACTACGTCGGAACATCGCCGTACATCACGT 1642
|||| || ||| ||||||||||||| || || || |||| ||||| || ||||| || |
Sbjct 1658 ACGATGCACTTTTAGAGATGTTCAGGATCGATTATATCGGGACATCACCATACATTACAT 1717
Query 1643 GCTCTCCGTCGCTACACCACCATA-GACTCTCATCACGTGACAAATTCCTAATCCTCTCA 1701
| ||||| || ||| || || | | || | ||||||||||||||||||||||| ||
Sbjct 1718 GTTCTCCATCACTATGTCATCACAAG-CTAACGTCACGTGACAAATTCCTAATCCTATCT 1776
Query 1702 TCCGATGGACTATACGAATACTTCTCGAACGAGGAAGCCATCTTCGAGGTTGACTCATTC 1761
|| |||||| | || ||||| ||||| ||| | |||||||| ||||||||||| || |||
Sbjct 1777 TCTGATGGATTGTATGAATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTC 1836
Query 1762 ATCTCAGCCTTCCCTGAAGGCGATCCTGCTCAACATCTCATTC-AAGAAGTCCTCCTTAG 1820
||||| || || |||||||||||||| |||||||| || | || |||||||||||||| |
Sbjct 1837 ATCTCTGCTTTTCCTGAAGGCGATCCAGCTCAACA-CTTAATCCAAGAAGTCCTCCTTCG 1895
Query 1821 AGCTGCCAAGAAATATGGTATGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCG 1880
|||||||| |||| ||||||||| |||||||||||| | |||||||||||||| |||||
Sbjct 1896 TGCTGCCAACAAATTTGGTATGGATTTTCATGAATTGTTGGAGATACCACAAGGTGATCG 1955
Query 1881 TCGGAGGTATCATGACGATGTTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAG 1940
| ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 1956 TAGGAGGTATCATGATGATGTCTCTGTGATAGTGATCTCACTTGAAGGAAGAATATGGAG 2015
Query 1941 ATCTTCCATGTGA 1953
||| || ||||||
Sbjct 2016 ATCATCAATGTGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5