BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09400.1 Length=1953 Score E Sequences producing significant alignments: (Bits) Value Ahg478259 jgi|Araly1|478259|fgenesh2_kg.3__960__AT3G09400.1 1236 0.0 Ahg349536 jgi|Araly1|349536|fgenesh1_pg.C_scaffold_6000129 614 9e-175 > Ahg478259 jgi|Araly1|478259|fgenesh2_kg.3__960__AT3G09400.1 Length=1968 Score = 1236 bits (669), Expect = 0.0 Identities = 779/833 (94%), Gaps = 4/833 (0%) Strand=Plus/Plus Query 1123 ATTAACCACAAAGACGTTCTTAGAGCTCTTCAACAAGCGTTGGAGAAAACAGAAGAATCG 1182 ||| || ||||||||||||||||||||||||| ||||||||| |||||||||| |||||| Sbjct 1138 ATTGACAACAAAGACGTTCTTAGAGCTCTTCAGCAAGCGTTGAAGAAAACAGAGGAATCG 1197 Query 1183 TTTGATCTGATGGTTAATGAGAATCCAGAATTAGCCTTGATGGGATCCTGCGTTCTTGTG 1242 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1198 TTTGATCTGATGGTTAGTGAGAATCCAGAATTAGCCTTGATGGGATCTTGCGTTCTTGTG 1257 Query 1243 ACATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTTCTT 1302 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1258 ACATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTT-TT 1316 Query 1303 -GCTCGAAGACCTAATGTCGAGAA-AATGAAGATGCAAAAGGAGCTTGAGAGAGTCAAAG 1360 ||| ||||||| || | | || || ||| ||||||||||| ||||||||| |||||| Sbjct 1317 AGCTAGAAGACCGGATCTTGGGATGAA-GAAAATGCAAAAGGACCTTGAGAGAATCAAAG 1375 Query 1361 AAGAAAGTCCATTAGAGACCTTGTTCATCACCGAAAGAGGACTGAGTCTTCTGGTCCCTG 1420 |||| |||||||||||||| |||||| |||| ||||||||| |||||||| |||| ||| Sbjct 1376 AAGAGAGTCCATTAGAGACATTGTTCGTCACAGAAAGAGGATTGAGTCTTTTGGTTCCTA 1435 Query 1421 TTCAGCTCAATAAGGAACATAGCACAAGTGTTGAAGAGGAAGTGAGAAGAATCAAGAAGG 1480 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 1436 TTCAGCTCAATAAGGAACATAGCACAAGTGTTGATGAGGAAGTGACAAGAATCAAGAAGG 1495 Query 1481 AACATCCTGATGATATATTAGCGATAGAGAATAATAGAGTGAAAGGTTATCTCAAAGTCA 1540 |||||||||||||| ||| || ||||||||| ||||||| |||||||||||||| |||| Sbjct 1496 AACATCCTGATGATGCATTGGCAATAGAGAATGATAGAGTAAAAGGTTATCTCAAGGTCA 1555 Query 1541 CTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAACGAGGCGCTTCTAGAGA 1600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1556 CTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGAACGAGGCGCTTCTCGAGA 1615 Query 1601 TGTTCAGAATAGACTACGTCGGAACATCGCCGTACATCACGTGCTCTCCGTCGCTACACC 1660 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1616 TGTTTAGAATAGACTACGTCGGAACATCACCGTACATCACGTGCTCTCCGTCGCTACACC 1675 Query 1661 ACCATAGACTCTCATCACGTGACAAATTCCTAATCCTCTCATCCGATGGACTATACGAAT 1720 |||| |||||| |||||||||||||||| || |||||||| ||||| ||| ||||||||| Sbjct 1676 ACCACAGACTCACATCACGTGACAAATTTCTCATCCTCTCCTCCGACGGATTATACGAAT 1735 Query 1721 ACTTCTCGAACGAGGAAGCCATCTTCGAGGTTGACTCATTCATCTCAGCCTTCCCTGAAG 1780 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1736 ACTTCTCGAACGAGGAAGCCATCTTCGAGGTCGACTCATTCATATCAGCCTTCCCTGAAG 1795 Query 1781 GCGATCCTGCTCAACATCTCATTCAAGAAGTCCTCCTTAGAGCTGCCAAGAAATATGGTA 1840 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1796 GCGATCCTGCTCAACATCTCATTCAAGAAGTCCTCCTTAGAGCCGCCAAGAAATATGGCA 1855 Query 1841 TGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGTCGGAGGTATCATGACGATG 1900 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1856 TGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCGCCGGAGGTATCATGATGATG 1915 Query 1901 TTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGATCTTCCATGTGA 1953 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 TTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAGATCTTCCATGTGA 1968 Score = 1170 bits (633), Expect = 0.0 Identities = 982/1143 (86%), Gaps = 53/1143 (5%) Strand=Plus/Plus Query 1 ATGGGAAATGGAGTCGCGAGTTTTAGTGGCTGTTGCGCCGGAACCACCGCCGGAGAAATT 60 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATGGGAAACAGAGTCGCGAGTTTTAGTGGCTGTTGCGCCGGAACCACCGCCGGAAAAATT 60 Query 61 TCCGGTCGATACGTA-ACCGGAGTAGGACTGGTTCAAGAAAACCTCGGCCACTCTTTCTG 119 ||| ||||| ||| | ||||| |||||| |||||||||||||||||||||||||||| Sbjct 61 TCCAGTCGAAACG-ATGTTGGAGTCGGACTGATTCAAGAAAACCTCGGCCACTCTTTCTG 119 Query 120 CTACGTTCGTCCAGTTCTCACCGGATCAAAATCTTCTTTCCCGCCGGAACCGCCCCTCCG 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTACGTTCGTCCAGTTCTCACCGGATCAAAATCTTCTTTCCCGCCGGAACCGCCCCTCCA 179 Query 180 ACCCGACCCGATACCCGGAACCACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTTAG 239 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 180 ACCGGACCCGATACCCGGAACCACCACCACTTTTCGTTCAATCTCCGGCGCCTCCGTTAG 239 Query 240 CGCCAATACTTCAACCGCGCTCTCAACTTCT-CTGTCAACAGATACGTCTGGAATAGCCT 298 ||||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||| Sbjct 240 CGCCAATACTTCAACGGCGCTTTCAGCTTCTTC-GTCAACAGACGCGTCTGGATTAGCCT 298 Query 299 CCGCGTTCGAGAGTTCCAATAGATTCGCTTCCTTGCCTCTCCAGCCTGTACCACGTAGTC 358 | ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||| Sbjct 299 CTGCGTTCGAGAGCTCCAATAGATTCGCCTCCTTGCCACTCCAGCCTGTGCCACGCGGTC 358 Query 359 CTATTAAGAAATCGGATCACGGGTCGGGTCTATTCGAACGCCGGTTCTTATCCGGTCCGA 418 | || || ||| ||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 359 CGATAAAAAAACCGGTTCACGTGTCGGGTCAATTCGAACGCCGGTTCTTATCCGGTCCGA 418 Query 419 TTGAAAGCGGTTTGGTTTCAGGGAAGAAGACCAAGGAGAAAGCAAAACTGAAGAAAAGTG 478 | |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 419 TCGAAAGCGGGTTGGTTTCAGGGAAGAAGAAGAAGGAGAAAGCAAAACTGAAGAAAAGTG 478 Query 479 GAAGCAAATCCTTTACGAAACCAAAAC-TGAAGAA-AAGTGA---A-AG-CAAAATC-TT 530 |||||||||| ||||||| |||||||| | || || || | | | ||||| | || Sbjct 479 GAAGCAAATCATTTACGATACCAAAACCT-AACAATAAATTTCTTACATTCAAAAACGTT 537 Query 531 TACATTCAAAAAC-GTTTTC-ACCAACTTATCTTGTTCGAAGAAGAGTGTGATT-AAGCC 587 | || | || | | | || | |||||||||||||||||||||||| ||||| || || Sbjct 538 TTCA--CGAAT-CTGGTATCTAACAACTTATCTTGTTCGAAGAAGAGCGTGATCGAA-CC 593 Query 588 AATCAACGGTTTCGATTCATTCGATGGATCATCAGATACTGATC--GTTACATACCTGAG 645 |||||| || ||||||||| || | |||||||||| | |||| | || | |||||| Sbjct 594 GATCAACTATTCCGATTCATTTGACGAATCATCAGATTCCGATCAAGGTAGA--CCTGAG 651 Query 646 ATCAACTCCTTAAGCACGATTGTGAGCAGCCATGAGAAACCTAGAATCAAAGAAGAAGAA 705 | ||| | || | |||||||| | |||||||| ||||| |||| || | ||||||||| Sbjct 652 AACAATTACTCAGGCACGATTCTAAGCAGCCACGAGAACCCTAAAACC---GAAGAAGAA 708 Query 706 GATAAGACTGAGTCTGCTTTAGAGGAGCCAAAGATACAATGGGCACAGGGGAAAGCAGGT 765 | || ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 709 -A-AA-ACTGAGTCTGCTTTAGATGAGCCAAAGATTCAATGGGCGCAGGGGAAAGCAGGG 765 Query 766 GAAGATCGAGTACACGTCATCCTCTCCGAGGAAAACGGTTGGCTTTTCGTCGGAATTTAC 825 ||||||||||| |||||||||||||| || ||||||||||||||||||||||| || ||| Sbjct 766 GAAGATCGAGTTCACGTCATCCTCTCGGAAGAAAACGGTTGGCTTTTCGTCGGGATATAC 825 Query 826 GACGGATTCAGCGGTCCAGATCCACCGGATTATCTTATCAAAAATCTCTACACTGCCGTG 885 |||||||||| |||||| ||| | |||||||||||| |||| ||||||||||| || ||| Sbjct 826 GACGGATTCAACGGTCCTGATGCGCCGGATTATCTTCTCAACAATCTCTACACCGCTGTG 885 Query 886 CTCAGAGAGCTCAAAGGGTTACTATGGATCGACAAAGGTGAATCATATAATAGAAACGGC 945 ||| |||||||||||| ||| | ||||| |||||| | | | | | || | | Sbjct 886 CTCGGAGAGCTCAAAGAGTTGCAATGGAACGACAA-G-T-A-TGA-AT--------C--C 930 Query 946 GAGTCCAACATCGAGAAACAGAGTACAGTCGAGCATGCATCCGATTCGGATCAAGAAAAC 1005 || | | | | | ||| ||||| | ||||||||||||||||||||||||||||||||| Sbjct 931 GAAT--ATC-T--ACAAA-AGAGTTCGGTCGAGCATGCATCCGATTCGGATCAAGAAAAC 984 Query 1006 TGCCCTGTGATGAATGGAAACGAT-GTTGCTTGTGGATCAAGAAACATTACGAGTGACGT 1064 |||| || ||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct 985 TGCCATGCGATGAATGGAAAC-ATTGTTGCTTGTGGATCAAGAAACATAACGAGTGACGT 1043 Query 1065 GAAGAAGTTGCAATGGAGGTGCGAGTGGGAGCATAACTCAAGCAACAAGTCTAATAATAT 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 GAAGAAGTTGCAATGGAGGTGCGAGTGGGAGCATAACTCAAGCAACAAGTCTAATAATAT 1103 Query 1125 TAA 1127 ||| Sbjct 1104 TAA 1106 > Ahg349536 jgi|Araly1|349536|fgenesh1_pg.C_scaffold_6000129 Length=2028 Score = 614 bits (332), Expect = 9e-175 Identities = 646/793 (81%), Gaps = 39/793 (5%) Strand=Plus/Plus Query 1185 TGATCTGATGGTTAATGAGAATCCAGAATTAGCCTTGATGGGATCCTGCGTTCTTGTGAC 1244 ||||| |||||||| ||||||||||||||||| |||||||| || || ||||| ||||| Sbjct 1251 TGATCAAATGGTTAAAGAGAATCCAGAATTAGCATTGATGGGTTCTTGTGTTCTCGTGAC 1310 Query 1245 ATTGATGAAAGGAGAAGATGTTTACGTGATGAGCGTTGGAGATAGCCGAGCGGTTCTT-- 1302 |||||||||||||||||||||||||||||||| || || ||||||||||||||| || Sbjct 1311 ATTGATGAAAGGAGAAGATGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTT-TTAG 1369 Query 1303 GCTC-GAAGACCTAATGT--CGA---GAAAATGAAGATGCAAAAGGAGCTT-GAGAGAGT 1355 || | ||| ||||||| | | | | | | |||| |||||||||| || |||||| | Sbjct 1370 GC-CGGAA-ACCTAATTTAGCCACCGGGAGA--AAGAGGCAAAAGGAG-TTGGAGAGAAT 1424 Query 1356 CAA-AGAAGAAAGTCCATTAG-AGACCTTG---TTCATCACCGAA-AGAGGACT--G-AG 1406 || |||||| ||| |||||| ||| | || | | ||| ||| | | | | Sbjct 1425 -AAGAGAAGATAGTTCATTAGAAGATAAAGAAATT-TTGA-TGAATGGAGCAATGCGTAA 1481 Query 1407 T-CTTCTGGTCCCTGTTCAGCTCAATAAGGAACATAGCACAAGTGTTGAAGAGGAAGTGA 1465 | ||| |||| ||| | || || || | ||||||||||||||| ||||||||||||||| Sbjct 1482 TACTT-TGGTTCCTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGA 1540 Query 1466 GAAGAATCAAGAAGGAACATCCTGATGAT-ATAT-TAGC-GATAGAGAATAATAGAGTGA 1522 ||||||||||||||||||||||||| ||| || | | || | |||||||| ||||||| | Sbjct 1541 GAAGAATCAAGAAGGAACATCCTGACGATGAT-TGT-GCAG-TAGAGAATGATAGAGTTA 1597 Query 1523 AAGGTTATCTCAAAGTCACTCGTGCATTTGGCGCTGGATTTCTTAAACAGCCAAAATGGA 1582 |||||||||| || ||||||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 1598 AAGGTTATCTTAAGGTCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGA 1657 Query 1583 ACGAGGCGCTTCTAGAGATGTTCAGAATAGACTACGTCGGAACATCGCCGTACATCACGT 1642 |||| || ||| ||||||||||||| || || || |||| ||||| || ||||| || | Sbjct 1658 ACGATGCACTTTTAGAGATGTTCAGGATCGATTATATCGGGACATCACCATACATTACAT 1717 Query 1643 GCTCTCCGTCGCTACACCACCATA-GACTCTCATCACGTGACAAATTCCTAATCCTCTCA 1701 | ||||| || ||| || || | | || | ||||||||||||||||||||||| || Sbjct 1718 GTTCTCCATCACTATGTCATCACAAG-CTAACGTCACGTGACAAATTCCTAATCCTATCT 1776 Query 1702 TCCGATGGACTATACGAATACTTCTCGAACGAGGAAGCCATCTTCGAGGTTGACTCATTC 1761 || |||||| | || ||||| ||||| ||| | |||||||| ||||||||||| || ||| Sbjct 1777 TCTGATGGATTGTATGAATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTC 1836 Query 1762 ATCTCAGCCTTCCCTGAAGGCGATCCTGCTCAACATCTCATTC-AAGAAGTCCTCCTTAG 1820 ||||| || || |||||||||||||| |||||||| || | || |||||||||||||| | Sbjct 1837 ATCTCTGCTTTTCCTGAAGGCGATCCAGCTCAACA-CTTAATCCAAGAAGTCCTCCTTCG 1895 Query 1821 AGCTGCCAAGAAATATGGTATGGACTTTCATGAATTGCTAGAGATACCACAAGGAGATCG 1880 |||||||| |||| ||||||||| |||||||||||| | |||||||||||||| ||||| Sbjct 1896 TGCTGCCAACAAATTTGGTATGGATTTTCATGAATTGTTGGAGATACCACAAGGTGATCG 1955 Query 1881 TCGGAGGTATCATGACGATGTTTCTGTGATTGTGATTTCACTTGAAGGAAGAATTTGGAG 1940 | ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||| Sbjct 1956 TAGGAGGTATCATGATGATGTCTCTGTGATAGTGATCTCACTTGAAGGAAGAATATGGAG 2015 Query 1941 ATCTTCCATGTGA 1953 ||| || |||||| Sbjct 2016 ATCATCAATGTGA 2028 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73399902115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5