BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09410.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478262 jgi|Araly1|478262|fgenesh2_kg.3__963__AT3G09410.1 2259 0.0
Ahg478260 jgi|Araly1|478260|fgenesh2_kg.3__961__AT3G09410.2 732 0.0
Ahg928614 jgi|Araly1|928614|scaffold_301071.1 444 1e-123
> Ahg478262 jgi|Araly1|478262|fgenesh2_kg.3__963__AT3G09410.1
Length=1400
Score = 2259 bits (1223), Expect = 0.0
Identities = 1344/1403 (96%), Gaps = 6/1403 (0%)
Strand=Plus/Plus
Query 27 TCTTCTTCAATGGCGATTCCAAGGTTTAGCTCTCTGTTACGGTGTAGAAAATGGGCTAAA 86
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTCTTCAATGGCGATTCCAAGGTTTAGCTCTCTGTTACGGTGTAGAAAATGGGCTAAG 60
Query 87 AGTGACTGGCTTGTCGCTTCTATAGGATGCGTATTGATCGtttttttCCTCTCTTTCTTC 146
||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 61 AGTGACTGGCTTGTCGCTTCTATCGGATTCGTATTGATCGTGTTTTTCCTCTCTTTCTTC 120
Query 147 TTCGATCCCACTTCAGACTCTGTCCCCTCCGTTGACCGATCTCGGCCAATCATA-TCTCC 205
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 121 ATCGATCCCACTTCAGACTCTGTCCCCTCCGTTGACCGATCTCGGCCAATCATATTC-CC 179
Query 206 TAGCGATCTGGTCAAGCTGAAGTTGTCGAGTGTAGCTAAAGAGAGAGGAGCTTTTTGTTT 265
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 TAGCGATCTGGTCAAACTGAAGTTGTCGAGTATAGCTAAAGAGAGAGGAGCTTTTTGTTT 239
Query 266 GGATGGAAGCTTGCCTGGGTACCACTTTCATGAGGGTTCTGGATCTGGCTCCCAAAGCTG 325
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GGATGGAAGCTTGCCTGGGTACCATTTTCATGAGGGTTCTGGATCTGGCTCCCAAAGCTG 299
Query 326 GCTTGTTCATTTGGAGGGTGGAGGCTGGTGCAACACAGTTGCGTCATGTTCTGCTCGAGC 385
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 GCTTGTTCATTTGGAGGGTGGAGGCTGGTGCAACACAGCTGCGTCATGTTCTGCTCGAGC 359
Query 386 ATTGACTAAATTAGGTTCTTCCAACTACTTTGAACAAGAAGTGGCCTTTCAAGGTGTTTT 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTGACTAAATTAGGTTCTTCCAACTACTTTGAACAAGAAGTGGCCTTTCAAGGTGTTTT 419
Query 446 AAGTAGTGACCCATCTCAAAATCCTGAATTCTTTAACTGGAACAAGGTTGCGATAAGGTA 505
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGCAGTGACCCATCTCAAAATCCTGAATTCTTTAACTGGAACAAGGTTGCGATAAGGTA 479
Query 506 CTGTGATGGTGCTTCTTTTTCTGGACGCCCTGAAGCTGAATTCAAGAATGGCACACGGCT 565
||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 480 CTGTGATGGTGCTTCTTTTGCTGGACACCCTGAAGCTGAATTCAAGAATGAAACACGGCT 539
Query 566 TTTCTTCCGGGGCCAGCTTATTTGGGAGGCTATTATTGATGAACTTTTGTCAATGGGCAT 625
|||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 540 TTTCTTCCGGGGTCAGCTCATTTGGGAGGCTATTATTGATGAACTGTTGTCGATGGGCAT 599
Query 626 GTCAGATGCCAAACAGGCCATACTTACAGGATGTTCTGCCGGTGGCTTGGCAAGTCTTAT 685
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GTCAGATGCGAAACAGGCCATACTTACAGGATGTTCTGCTGGTGGCTTGGCAAGTCTTAT 659
Query 686 ACATTGTGACTACTTTCGAGATCATCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGA 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACATTGTGACTACTTTCGAGATCATCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGA 719
Query 746 TGGAGGCTACTTTCTCAACGTGCCTGATGTCCTTGGAAACCCAACAATGAGGTCTTTCTA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGAGGCTACTTTCTCAACGTGCCTGATGTCCTTGGAAACCCAACAATGAGGTCTTTCTA 779
Query 806 TCATGATGTTGTTAATTTGCAGGGCGTAGAGAAGAGCTTGGATCAGAAATGTGTAGCCAA 865
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 780 TCATGATGTTGTTAATTTGCAGGGTGTAGATAAGAGCTTGGATCAGAAATGTGAAGCCAA 839
Query 866 AACGGAGCCATCTAAGTGTATGTTTCCTCAAGAATTCCTGAAAAACATAAGAACTCCGGT 925
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 840 AACAGAGCCATCTAAGTGTATGTTTCCTCAAGAATTCATTAAAAACATAAGAACTCCAGT 899
Query 926 ATTTCTTGTCAATCCAGCCTACGATTTTTGGCAGATTCAACATGTCTTGGTACCAACTTC 985
||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 900 ATTTCTTGTGAACCCAGCCTACGATTTTTGGCAGATTCAAAATGTCTTGGTACCAATTTC 959
Query 986 TGCGGATCCAGATAAAAGTTGGGCAAAGTGCAGACTCAATATTAAGGAATGTGATGCCGA 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGCGGATCCAGATAAAAGTTGGGCAAAGTGCAGACTCAATATTAAGGAATGTGATGCCGC 1019
Query 1046 ACAGATTAAAGTTCTACACGGTTTTCGCAGTTCTATGATG-ACTGCAATTGGGGAATTTC 1104
|||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1020 ACAGATGAAAGTTCTACACGGTTTTCGCAGTTCTATGATGGA-TGCGATTGGGGAATTTC 1078
Query 1105 ATCAGAACAAAGATGGTGGGATGTTCATAGATTCCTGCTATGCTCATTGCCAGACAGTCA 1164
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATCAGAACAAAGATGGTGGCATGTTCATAGATTCCTGCTATGCTCATTGCCAGACAGTCA 1138
Query 1165 TGTCCGTGACATGGCACTCCCTGACCTCACCAAGAATCGAAAATAAGACAATTGCAGAGT 1224
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1139 TGTCAGTGACATGGCACTCCCCAACCTCACCAAGAATCGAAAATAAGACAATCGCAGAAT 1198
Query 1225 CTGTAGGTGACTGGTACTTCAACAGAAAACCGGTGAAGCTAATCGATTGTCCATACCCGT 1284
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 1199 CTGTAGGTGACTGGTACTTCAACCGAAAACCGGTGAAGCTAATCGATTGTCCTTACCCAT 1258
Query 1285 GCAATCCTTCTTGTTACAACATGAATTTCACATGAACTTGCCTTATA-TCCTCATTTTAC 1343
||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||
Sbjct 1259 GCAATCCTTCTTGTTACAACATGAATTTCACCTGAAGTTGCCTTATACTC-TCATTTTAC 1317
Query 1344 CACTTCCTCTGCTTGTGGACTTTTTCGATTCTCCAGAAGCTTCTTCAGCAAGGGAGCAGT 1403
|| | ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 1318 CAATCCCTCTGCTTGTGGACTTTTTCGATTCTCCAGAAGCTTATTCATCGAGGGAGCAGT 1377
Query 1404 CACTTCCTCAAAATTCTCAATCC 1426
| ||||||||||| ||||||||
Sbjct 1378 CGTTTCCTCAAAATCCTCAATCC 1400
> Ahg478260 jgi|Araly1|478260|fgenesh2_kg.3__961__AT3G09410.2
Length=1122
Score = 732 bits (396), Expect = 0.0
Identities = 623/730 (85%), Gaps = 26/730 (4%)
Strand=Plus/Plus
Query 580 AGCTTATTTGGGAGGCTATTATTGATGAACTT-TTGTCAATGGGCATGTCAGATGCCAAA 638
|||| ||||||||| | ||||| |||||| || ||||| |||||||||||| |||| |||
Sbjct 407 AGCTCATTTGGGAGACAATTATGGATGAA-TTGTTGTCGATGGGCATGTCACATGCGAAA 465
Query 639 CAGGCCATACTTACAGGATGTTCTGCCGGTGGCTTGGCAAGTCTTATACATTGTGACTAC 698
|| || || || |||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 466 CATGCAATTCTCACAGGATGTTCTGCAGGTGGCTTGGCTACTCTTATACATTGTGACTAC 525
Query 699 TTTCGAGATCATCTTCCAAAAGATGCAGCTGTCAAATGTGTTTCTGATGGAGGCTACT-T 757
|||||||| ||||| || || |||||| |||| ||||||||||| ||||||||||| | |
Sbjct 526 TTTCGAGACCATCTGCCTAACGATGCAACTGTTAAATGTGTTTCCGATGGAGGCTA-TAT 584
Query 758 TCTCAACGTGCCTGATGTCCTTGGAAACCCAACAATGAGG-TCTTTCTATCATGATGTTG 816
||||||| |||||||||| |||||||||||||||||| || ||||||| |||||||||||
Sbjct 585 TCTCAACTTGCCTGATGTGCTTGGAAACCCAACAATG-GGATCTTTCTTTCATGATGTTG 643
Query 817 TTAATTTGCAGGGCGTAGAGAAGAGCTTGGATCAGAAATGTGTAGCCAAAACGGAGCCAT 876
||| ||||| ||||||| | ||||||||||||||| ||||||||||||| ||| ||||
Sbjct 644 TTACCCTGCAGCGCGTAGATAGGAGCTTGGATCAGAATTGTGTAGCCAAAATGGAACCAT 703
Query 877 CTAAGTGTATGTTTCCTCAAGAATTC-CTGAAAAACATAAGAACTCCGGTATTTCTTGTC 935
|||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 704 CTAAGTGTCTGTTTCCTCAAGAA-TCGCTTAAAAACATAAGAACTCCGGTATTTCTTGTC 762
Query 936 AATC-CAGCCTACGATTTTTGGCAGATTCAACATGT-CTTGGTACCA-ACTTCTGCGGAT 992
|| | |||||||||||| |||||| |||||| ||| || ||||||| | | || || ||
Sbjct 763 AA-CACAGCCTACGATTATTGGCAAATTCAAAATGGACT-GGTACCAGAGT-CTCCGAAT 819
Query 993 CCAGATAAAAGTTGGGCAAAGTGCAGACTCAATATTAAGGAATGTGATGCCGAACAGATT 1052
|||| |||| ||||| | || |||||||||||| ||||||||||||||| ||| ||
Sbjct 820 TTAGATGAAAGATGGGCGATTTGTAGACTCAATATTCAGGAATGTGATGCCGCACAAATG 879
Query 1053 AAAGTTCTACACGGTTTTCGCAGTTCTATGAT-GACTGCAATTGGGGAATTTCATCAGAA 1111
||||||||||| |||||||| | ||| |||| || ||| || || ||||||||| || |
Sbjct 880 AAAGTTCTACATGGTTTTCGGAATTCCCTGATCGA-TGCGATCGGAGAATTTCATGAGGA 938
Query 1112 CAAAGATGGTGGGATGTTCATAGATTCCTGCTATGCTCATTGCCAGACA-GTCATGTCCG 1170
|||||| ||||||||||| ||| |||| ||| || |||||||||||| | | | | |
Sbjct 939 CAAAGAGGGTGGGATGTTTATAAATTCGTGCAATTCTCATTGCCAGATAAG--A-GA--G 993
Query 1171 TGACATGGCACTCCCTGACCTCACCAAGAATCGAAAATAAGACAATTGCAGAGTCTGTAG 1230
| |||||||||||| |||||| ||||||||||||||||||| || |||||||||||||
Sbjct 994 T--CATGGCACTCCCCAACCTCAACAAGAATCGAAAATAAGACGATCGCAGAGTCTGTAG 1051
Query 1231 GTGACTGGTACTTCAACAGAAAACCGGTGAAGCTAATCGATTGTCCATACCCGTGCAAT- 1289
|||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1052 GTGATTGGTACTACAACCGAAAACCAGTGAAGCTAATCGATTGTCCATACCCGTGCAATA 1111
Query 1290 CCTTCTTGTT 1299
||| ||||||
Sbjct 1112 CCT-CTTGTT 1120
> Ahg928614 jgi|Araly1|928614|scaffold_301071.1
Length=1375
Score = 444 bits (240), Expect = 1e-123
Identities = 343/391 (88%), Gaps = 14/391 (4%)
Strand=Plus/Plus
Query 257 TTTTTGTTTGGATGGAAGCTTGCCTGGGTACCACTTTCATGAGGGTTCTGGATCTGGCTC 316
|||||| |||||||||||||||||||| || ||||||||| ||||||| |||||||||||
Sbjct 248 TTTTTGCTTGGATGGAAGCTTGCCTGGTTATCACTTTCATAAGGGTTCAGGATCTGGCTC 307
Query 317 CCAAAGCTGGCTTGTTCATT--TGGAGGGTGGAGGCTGGTGCAACAC-AGTTGCGTCATG 373
| ||||||||||| || || | ||||||||||||||||| || || | | | ||||||
Sbjct 308 CAAAAGCTGGCTTCTT--TTCCTAGAGGGTGGAGGCTGGTGTAATACTA-TAGAGTCATG 364
Query 374 TTCTGCTCGAGCATTGACTAAATTAGGTTCTTCCAACTACTTTGAACA-AGAAGTGGCCT 432
|||| |||||||| |||||| ||||||||||||| || ||||||||| | |||||||||
Sbjct 365 TTCTTCTCGAGCAATGACTAGCTTAGGTTCTTCCAGCTTCTTTGAACATA-AAGTGGCCT 423
Query 433 TTCAAGGTGTTTTAAGTAGTGACCCATCTCAAAATCCTGAATTCTTTAACTGGAACAAG- 491
|||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct 424 TTCAAGGTGTTTTAAGCAGTGACCCATCTCAAAATCCAGACTTCTTTAACTGGAA-TAGA 482
Query 492 GTTGC-GATAAGGTACTGTGATGGTGCTTCTTTTTCTGGACGCCCTGAAGCTGAATTCAA 550
||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 483 GTT-CTGATAAGGTACTGTGATGGTGCTTCTTTTGCTGGACACCCTGAAGCTGAATTCAA 541
Query 551 GAATG-GCACACGGCTTTTCTTCCGGGGCCAGCTTATTTGGGAGGCTATTATTGATGAAC 609
||||| | || ||||||||||| || |||||||| ||||||||||| ||||| |||||||
Sbjct 542 GAATGAG-ACGCGGCTTTTCTTTCGCGGCCAGCTCATTTGGGAGGCAATTATGGATGAAC 600
Query 610 TTTTGTCAATGGGCATGTCAGATGCCAAACA 640
| ||||| |||||||||||| |||| |||||
Sbjct 601 TGTTGTCGATGGGCATGTCACATGCGAAACA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5