BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09430.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478263 jgi|Araly1|478263|fgenesh2_kg.3__964__AT3G09430.1 1439 0.0
Ahg887666 jgi|Araly1|887666|Al_scaffold_0614_1 948 0.0
> Ahg478263 jgi|Araly1|478263|fgenesh2_kg.3__964__AT3G09430.1
Length=1035
Score = 1439 bits (779), Expect = 0.0
Identities = 926/994 (93%), Gaps = 21/994 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTCATCGTCACGATCTCTGGTTTCTTCCTACACCTTTGATGAGAAAGACCTA 60
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGCGTCGTCATCGTCACGATCGCTGGTTTCTTCCTATACCTTTGATGATAAAGACCTA 60
Query 61 GACGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGC 120
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 GAAGACGCTGATTTATGGGCGGTCATTGATTCCGCCGCTGCTGCAGCTACTATCGCCGGC 120
Query 121 AAATCTCCGAAACCCCTT-GCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGT 179
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AAATCTCCGAAA-CCCTTAGCTATTAGGTATCCAAATTACAATTCTCCTCCTACGCCTGT 179
Query 180 TTCGTATCCTTCTCCACAGTCGAAAATTCTTCAGATCCCCAATCGTAACCCTAATCTTGG 239
|||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 180 TTCGTATCCTTCTCCACAGTCGAAGGTTCTTCAGATCCAGAATCGTGACCCTAATCTTGG 239
Query 240 CC-GAGGATTGAACGAGGAGTCTAATCGTCCGAGCAAAATGGCCAGATCTCGCATCTTGT 298
|| | || ||||| || ||||||| ||||||| ||||||||||||||||||| ||||||
Sbjct 240 CCGGCGG-TTGAATGAAGAGTCTACGCGTCCGAACAAAATGGCCAGATCTCGCGTCTTGT 298
Query 299 CTGAGGTGAAGAGTGAGACTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTCGACCC 358
|||||||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||
Sbjct 299 CTGAGGTGAAGAGTGAGAGTCCGATGGCTCTTGTTACGACGTCGCACCGAAATTTAACCC 358
Query 359 CGAATATCATCAATTCGACGAAGTTTTCTTCGCCGGAGAGTTACTTGTCGCCTGGGATTA 418
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 359 CGAATATCATCAATTCGACTAAGTTTTCTTCTCCGGAGAGTTACTTGTCGCCTGGAATTC 418
Query 419 GACAGCCTACGCCTTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGA 478
| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGCAGTCTACTCCCTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGG 478
Query 479 TTAATGAGATGCGACATAGCTTGTCCGGTAGCTTTCCTTCTGCTACTCTGTTCAAGGAGT 538
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 479 TTAATGAGATGCGACATAGCTTGTCTGGGAGCTTTCCTTCTGCTACTCTGTTCAAGGAGT 538
Query 539 ACCAGAATACAGCAATGGCGATTCTAGAGAAATCTGATTACACGATGATATCAGGGAAGG 598
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 539 ACCAGAATACAGCAATGGCGATTCTAGAAAAATCTGACTACACGATGATCTCAGGGAAGG 598
Query 599 CATACATCAAAAAGTCAGGTTGGAGGAAAATATCGTTTTACTTCAATGTGTCTTATGAAA 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CATACATTAAAAAGTCAGGTTGGAGGAAAATATCGTTTTACTTCAATGTGTCTTATGAAA 658
Query 659 TAAGAGACAAGACTATTGAATTCGACGAAAACAGAAATGTCCAGCGTGCTGAGTTCATCG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 TAAGAGACAAGACTATTGAATTCGACGAAAACAGAAATGTCCAGCGTGCTGAGTTCACCG 718
Query 719 TTCGAGCCATTATGCATGGAGGAAGATTCGCTGACGGATGGGGTTCTTGTGAGCGACGTG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCGAGCCATTATGCATGGAGGAAGATTCGCTGACGGATGGGGTTCTTGTGAGCGACGTG 778
Query 779 AGAAGAAATTTCTTAAACCGAATCACGATAT-CCCTAGCACAGCGGAGACCAGAGCCAAA 837
||||||||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||
Sbjct 779 AGAAGAAATTTCTCAAACCAAATCACGATATTCCC-AGCACAGCAGAGACCAGAGCCAAA 837
Query 838 AACAGGGCTTGTCAGGATCTTCTTGGAATCGGTGAATATCGAGAAAGCCCAGCTGGGCTT 897
||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 838 AACAGGGCTTGTCAGGATCTTCTTGGAATCGGTGAATATCGAGAA--CC-A-C-G----- 887
Query 898 CCACGATGATCAGACAACATCAAATGTATTTCCCGACCTTGCCAATCCCAAGCTAAACCT 957
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 888 --A---TGATCAGACAACATCAAATGTATTTCCCGACCTTGCCAACCCCAAGCTAAACCT 942
Query 958 TATCAAACCCACACCAACCGATGTCTTTTATGGG 991
|| |||||||||||||||| |||||||| |||||
Sbjct 943 TACCAAACCCACACCAACCAATGTCTTTCATGGG 976
> Ahg887666 jgi|Araly1|887666|Al_scaffold_0614_1
Length=699
Score = 948 bits (513), Expect = 0.0
Identities = 584/619 (94%), Gaps = 2/619 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTCATCGTCACGATCTCTGGTTTCTTCCTACACCTTTGATGAGAAAGACCTA 60
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGCGTCGTCATCGTCACGATCGCTGGTTTCTTCCTATACCTTTGATGATAAAGACCTA 60
Query 61 GACGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGC 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGG 120
Query 121 AAATCTCCGAAACCCCTT-GCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGT 179
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCTCCGAAA-CCCTTAGCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGT 179
Query 180 TTCGTATCCTTCTCCACAGTCGAAAATTCTTCAGATCCCCAATCGTAACCCTAATCTTGG 239
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 180 TTCGTATCCTTCTCCACAGTCGAAGGTTCTTCAGATCCAGAATCGTAACCCTAATCTTGC 239
Query 240 CCGAGGATTGAACGAGGAGTCTAATCGTCCGAGCAAAATGGCCAGATCTCGCATCTTGTC 299
|||||||||||| |||||||||| ||||||| ||||||||| ||||||||| |||||||
Sbjct 240 CCGAGGATTGAATGAGGAGTCTACGCGTCCGAACAAAATGGCTAGATCTCGCGTCTTGTC 299
Query 300 TGAGGTGAAGAGTGAGACTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTCGACCCC 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 TGAGGTGAAGAGTGAGAGTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTTGACCCC 359
Query 360 GAATATCATCAATTCGACGAAGTTTTCTTCGCCGGAGAGTTACTTGTCGCCTGGGATTAG 419
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 360 GAATATCATCAATTCGACTAAGTTTTCTTCTCCGGAGAGTTACTTGTCGCCTGGAATTCG 419
Query 420 ACAGCCTACGCCTTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGAT 479
||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 GCAGTCTACTCCCTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGGT 479
Query 480 TAATGAGATGCGACATAGCTTGTCCGGTAGCTTTCCTTCTGCTACTCTGTTCAAGGAGTA 539
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 480 TAATGAGATGCGACATAGCTTGTCTGGGAGCTTTCCTTCTGCTACTCTGTTCAAGGAGTA 539
Query 540 CCAGAATACAGCAATGGCGATTCTAGAGAAATCTGATTACACGATGATATCAGGGAAGGC 599
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 540 CCAGAATACAGCAATGGCGATTCTAGAAAAATCTGACTACACGATGATCTCAGGGAAGGC 599
Query 600 ATACATCAAAAAGTCAGGT 618
|||||| ||||||||||||
Sbjct 600 ATACATTAAAAAGTCAGGT 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5