BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09470.1
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317751 jgi|Araly1|317751|fgenesh1_pm.C_scaffold_3000767 1995 0.0
> Ahg317751 jgi|Araly1|317751|fgenesh1_pm.C_scaffold_3000767
Length=1314
Score = 1995 bits (1080), Expect = 0.0
Identities = 1189/1243 (96%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 104 ATGGAATCTCGAAACGACGAGGAGGCGCCGTTGATCTCTGCCTCTGGTGAGGATCGGAAA 163
||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1 ATGGATTCTCGAAACGACGAGGAGGCGCCGTTGGTCTCAGCCTCTGGTGAGGATCGGAAG 60
Query 164 GTCAGAGCTGGAAAGTGCTACACAAGGGATGTTCATATCCTCAGCATCTCCTTTCTGC-T 222
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 61 GTCAGAGCTGGAAAGAGCTACACAAGAGATGTTCATATCCTCAGCATCTCCTTTCT-CTT 119
Query 223 AATCTTCCTCGCTTACGGTGCTGCTCAGAACCTCGAAACTACCGTAAATAAGGATTTGGG 282
|||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 120 AATCTTCCTCGCCTATGGTGCTGCTCAGAACCTTGAAACTACCGTTAATAAGGATTTGGG 179
Query 283 AACAATCTCTCTGGGGATATTGTATGTGTCCTTCATGTTTTGCTCCATGGTTGCATCTTT 342
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACAATATCTCTAGGGATATTATATGTGTCCTTCATGTTTTGCTCCATGGTTGCATCTTT 239
Query 343 GGTTGTCCGGTTAATGGGATCAAAGAATGCTCTGGTTTTAGGAACTACTGGGTATTGGCT 402
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GGTTGTCCGGTTAATGGGATCAAAGAATGCTCTGGTTTTAGGAACTACTGGCTATTGGCT 299
Query 403 CTTTGTTGCTGCTAATCTGAAGCCATCATGGTTTACTATGGTACCAGCCTCTTTATACCT 462
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CTTTGTCGCTGCCAATCTGAAGCCATCATGGTTTACTATGGTACCGGCCTCTTTATACCT 359
Query 463 TGGATTTGCAGCTTCAATAATATGGGTTGGTCAGGGAACATACCTTACATCAATTGCGAG 522
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 360 TGGATTTGCAGCTTCAATAATATGGGTTGGCCAGGGAACGTACCTTACTTCAATTGCGAG 419
Query 523 AAGCCATGCTACAGATCATGGCCTGCATGAAGGTTCGGTAATAGGTGTCTTCAATGGGGA 582
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 AAGCCATGCTAAAGATCATGGCCTGCATGAAGGTTCGGTAATCGGTGTCTTCAATGGGGA 479
Query 583 ATTTTGGGCTATGTTTGCCTGCCACCAGCTGTTTGGGAATCTCATCACACTTGCATTACT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 ATTTTGGGCTATGTTTGCCTGCCACCAGCTGTTTGGGAATCTCATCACACTTGCATTGCT 539
Query 643 GAAAGATGGAAAGGAAGGAAGCACCAGTGGCACTACCTTATTGATGTTGGTGTTTCTCTT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAAAGATGGAAAGGAAGGAAGCACCAGTGGCACTACCTTATTGATGTTGGTGTTTCTCTT 599
Query 703 CAGTATGACATTAGGAACAATACTTATGTTCTTCATTCGGAAAATTGATGGAGAAGATGG 762
|||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 600 CAGTATGACATTAGGAACAATACTAATGTTCTTCATTCGGGAAATTGACGGAGAAGATGG 659
Query 763 AAAAGGACCTGTGGGTTCTCCTGTGGGCTTAGTTGATTCCTTGGCATCTCTTCCAAGGAT 822
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 660 AAAAGGACCTGTGGGTTCTCCTGTGGGCTTACTTGATTCCTTGATTTCTCTTCCAAGGAT 719
Query 823 GATAATTACTCCTTTGCTCGACATACGGATGCTACTGATTGTCCCACTCCTTGCATATTC 882
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GATAATCACTCCTTTGCTCAACATACGGATGCTACTGATTGTCCCACTCCTTGCATACTC 779
Query 883 AGGATTGCAACAAGCATTTGTTTGGGCTGAGTTTACAAAGGAAATTGTTACGCCGGCGAT 942
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 AGGATTGCAACAAGCATTTGTTTGGGCTGAGTTTACAAAGGAAATTGTTACACCGGCGAT 839
Query 943 TGGTGTCTCAGGTGTTGGTGGGGCGATGGCAGTCTACGGAGCTCTTGATGCAGTTTGTTC 1002
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGGTGTCTCAGGTGTCGGTGGGGCGATGGCAGTCTACGGAGCTCTTGATGCAGTTTGTTC 899
Query 1003 AATGACTGCTGGAAGGTTTACCTCTGGTTTGTCATCGATCACCTTCATAGTTTCTGGTGG 1062
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 900 AATGACGGCTGGAAGGTTTACCTCTGGTTTGTCATCAATCACCTTCATAGTTTCCGGTGG 959
Query 1063 AGCTGTTGCTCAAGCTTCTGTGTTTCTCTGGCTTCTTCTCGGGTACAGGCAAACTAGCGG 1122
|||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 960 AGCTGTAGCTCAAGCTTCGGTGTTTCTCTGGCTTCTTCTTGGGTACAGGCAAACGAGCGG 1019
Query 1123 AGTACTTGGCACAGCTTACCCACTTATAATGGCGGCCATATTAGGAATTGGTGATGGAAT 1182
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 1020 AGTACTTGGCACAGCTTACCCACTCATAATGGCGGCGATATTAGGAATTGGTGACGGGAT 1079
Query 1183 ATTAAATACTCAAATCAGTGCTCTTCTCGCATTACTCTTCAAACATGACACGGAAGGAGC 1242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 ATTAAATACTCAAATCAGTGCTCTTCTCGCATTACTCTTCAAGCATGACACGGAAGGAGC 1139
Query 1243 ATTTGCGCAGCTAAAAGTATGGCAGAGCGCAGCAATAGCGATAGTGTTCTTCCTAAGCCC 1302
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 GTTTGCACAGCTAAAAGTATGGCAGAGCGCAGCAATAGCAATAGTGTTCTTCCTAAGCCC 1199
Query 1303 GTACATATCACTGCAAGCAATGCTCATAGTGATGCTGGTTATG 1345
||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1200 GTACATATCGCTGCAAGCAATGCTCATAGTGATGCTTGTTATG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5