BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09480.1
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478268 jgi|Araly1|478268|fgenesh2_kg.3__969__AT3G09480.1 747 0.0
Ahg939636 jgi|Araly1|939636|scaffold_600180.1 379 1e-104
Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266 296 1e-79
Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1 243 2e-63
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 222 2e-57
> Ahg478268 jgi|Araly1|478268|fgenesh2_kg.3__969__AT3G09480.1
Length=546
Score = 747 bits (404), Expect = 0.0
Identities = 513/562 (91%), Gaps = 21/562 (4%)
Strand=Plus/Plus
Query 32 TCCGAATTTTATCCAAAGCAATGGCACCGAAGGCAGAGAAGAAACCGTCggagaaagc-a 90
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 1 TCCGAATTTTATCGAAATCAATGGCACCGAAGGCAGAGAAGAAACCGGCGGAG-AAGCAA 59
Query 91 ccaaaggcagataagaagatcacgaaagaaggaggaagcgagaggaagaagaagactaag 150
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 CCAAAGGCAGAGAAGAAGATTACGAAAGAAGGAGGAAGCGAGAGGAAGAAGAAGACTAAG 119
Query 151 aagagcacagagaCGTACAAGATCTACCTATTCAAGGTGTTGAAACAAGTTCATCCTGAT 210
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AAGAGCACAGAGACGTACAAGATCTACCTATTCAAGGTGTTGAAACAGGTTCATCCTGAT 179
Query 211 ATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGACACCTTCGAG 270
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 ATTGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGATACCTTCGAG 239
Query 271 AAAATTGCTCTGGAATCGTCGCGATTGGCTAGGTATAACAAGAAACCGACGATCACGTCC 330
||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 240 AAAATCGCTCAGGAATCGTCAAAATTGGCTAGGTATAACAAGAAGCCGACGATCACGTCC 299
Query 331 CGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTAGCGAAGCACGCTGTT 390
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTATCGAAGCACGCTGTT 359
Query 391 TCTGAGGGTACCAAAGCCGTCACCAAATTCACCAGTTCTTAGATTAGGTTCtt-ttttt- 448
||||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||||
Sbjct 360 TCTGAGGGTACCAAAGCCGTCACAAAATTCACCAGCTCTTAGAT-AGATTCTTCTTTTTT 418
Query 449 --CTCTTCGATTTTATTTTCGGTTAATATGTTCACCAGTTGATTTCAAAGATATAATTTT 506
||||| | |||||||||||||| |||| || | |||||||| ||||||||||||||||
Sbjct 419 TTCTCTTTGGTTTTATTTTCGGTTTATATTTTTATCAGTTGATCTCAAAGATATAATTTT 478
Query 507 CGGCAGTCTCTTCGATATTTTCTATGATTGATTTTACGTTATGATGCTATTGAAATTAGG 566
||||||||||| | ||| |||| || |||||| ||||||| ||||||||||
Sbjct 479 CGGCAGTCTCT---A-ATT------GATT--TT--ACGTTACGATGCTACTGAAATTAGG 524
Query 567 GTTTACAAATCTTTGGGTATAA 588
|||| |||||||||||||||||
Sbjct 525 GTTTCCAAATCTTTGGGTATAA 546
> Ahg939636 jgi|Araly1|939636|scaffold_600180.1
Length=439
Score = 379 bits (205), Expect = 1e-104
Identities = 344/408 (84%), Gaps = 22/408 (5%)
Strand=Plus/Plus
Query 51 AATGGCACCGAAGGCAGAGAAGAAACCGTCggag--a--a--agcaccaaaggcagataa 104
|||||||||||||||||||||||||||| ||||| | | |||||||||||| || ||
Sbjct 20 AATGGCACCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAAAGGCGGAGAA 79
Query 105 gaagatcacgaaagaaggagg-a--agcgag-------ag--gaagaagaagactaagaa 152
||||||| ||||||||||||| | |||||| || |||||||||||| |||||
Sbjct 80 GAAGATCGCGAAAGAAGGAGGAACGAGCGAGATTATTAAGAAGAAGAAGAAGACGAAGAA 139
Query 153 gagcacagagaCGTACAAGATCTACCTATTCAAGGTGTTGAAACAAGTTCATCCTGATAT 212
|||||| |||||||||||||||||| | |||||||| |||||||| |||||||| |||||
Sbjct 140 GAGCACGGAGACGTACAAGATCTACATCTTCAAGGTATTGAAACAGGTTCATCCAGATAT 199
Query 213 CGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGACACCTTCGAGAA 272
||| |||||||| ||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 200 CGGAATCTCTGGTAAAGCAATGGGAATCATGAACAGTTTCATCAACGACATTTTTGAGAA 259
Query 273 AATTGCTCTGGAATCGTCGCGAT-TGGCTAGGTATAACAAGAAACCGACGATCACGTCCC 331
| | |||| ||||||||| || | | ||| | || || ||||||||||| |||||||| |
Sbjct 260 ACTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGAAACCGACCATCACGTCTC 318
Query 332 GGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTAGCGAAGCACGCTGTTT 391
| |||||||||||||| || || || || |||||||||||||| || ||||| ||||| |
Sbjct 319 GTGAAATCCAAACCGCTGTGAGACTTGTTTTGCCTGGTGAATTGGCTAAGCATGCTGTCT 378
Query 392 CTGAGGGTACCAAAGCCGTCACCAAATTCACCAGTTCTTA--GATTAG 437
|||| || ||||||||||||||||||||||| || ||||| ||||||
Sbjct 379 CTGAAGGAACCAAAGCCGTCACCAAATTCACAAGCTCTTAAAGATTAG 426
> Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266
Length=294
Score = 296 bits (160), Expect = 1e-79
Identities = 246/288 (85%), Gaps = 4/288 (1%)
Strand=Plus/Plus
Query 138 gaagaaga-ctaagaagagca-cagagaCGTACAAGATCTACCTATTCAAGGTGTTGAAA 195
|||||| | | ||||||| || | |||||||||||||||||| | |||||||| |||||
Sbjct 3 GAAGAA-ATCGAAGAAGAACATC-GAGACGTACAAGATCTACATCTTCAAGGTTTTGAAG 60
Query 196 CAAGTTCATCCTGATATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATC 255
||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 CAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATC 120
Query 256 AACGACACCTTCGAGAAAATTGCTCTGGAATCGTCGCGATTGGCTAGGTATAACAAGAAA 315
||||||| |||||||||| | |||| |||||| ||||||||||||||||| ||||||||
Sbjct 121 AACGACATCTTCGAGAAACTCGCTCAGGAATCATCGCGATTGGCTAGGTACAACAAGAAG 180
Query 316 CCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTA 375
||||||||||| || |||||||| || || || || || || ||||||||||| ||| |
Sbjct 181 CCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAACTC 240
Query 376 GCGAAGCACGCTGTTTCTGAGGGTACCAAAGCCGTCACCAAATTCACC 423
|||| |||||||||||||| || || || || || || |||||||||
Sbjct 241 TCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCACC 288
> Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1
Length=526
Score = 243 bits (131), Expect = 2e-63
Identities = 252/310 (81%), Gaps = 10/310 (3%)
Strand=Plus/Plus
Query 131 agaggaagaagaaga-ctaagaagagc-acagagaCGTACAAGATCTACCTATTCAAGGT 188
||| ||||||| ||| ||||||||| | | |||||||||||||||||| | ||||||||
Sbjct 144 AGAAGAAGAAG-AGATCTAAGAAGAACGTC-GAGACGTACAAGATCTACATCTTCAAGGT 201
Query 189 GTTGAAACAAGTTCATCCTGATATCGGGATCTCTGGAAAAGCCATGGGAATCATGAACAG 248
|||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||
Sbjct 202 GTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAACAG 261
Query 249 TTTCATCAACGACACCTTCGAGAAAATTGCTC-TGGAATCGTCGC-GATTGGCTAGGTAT 306
|||||||||||| | ||| |||||| ||||| || | || ||| | ||| | |||||
Sbjct 262 TTTCATCAACGATATCTTTGAGAAACTTGCTGGTG-AGTCTTCGAAGCTTG-CGAGGTAC 319
Query 307 AACAAGAAACCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCT 366
|||||||| |||||||| || || |||| || || || || || || || |||||||||
Sbjct 320 AACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGTTGCCT 379
Query 367 GGTGAATTAGCGAAGCACGCTGTTTCTGA-GGGTACCAAAGCCGTCACCAAATTCACCAG 425
||||| || || || || ||||||||||| ||| || || || || || || || || ||
Sbjct 380 GGTGAGTTGGCAAAACATGCTGTTTCTGAAGGG-ACTAAGGCGGTTACGAAGTTTACGAG 438
Query 426 TTCTTAGATT 435
| ||||||||
Sbjct 439 TACTTAGATT 448
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 222 bits (120), Expect = 2e-57
Identities = 249/309 (81%), Gaps = 17/309 (6%)
Strand=Plus/Plus
Query 135 gaagaagaagactaagaagag-cacagagaCGTACAAGATCTACCTATTCAAGGTGT-TG 192
|||||||| || |||||||| | ||||| |||||||||||| | |||||||| | ||
Sbjct 229 GAAGAAGATGAAGAAGAAGAGTGTC-GAGACTTACAAGATCTACATCTTCAAGGT-TCTG 286
Query 193 AAACAAGTTCATCCTGATATCGGGATCTCTG-GAAAAGCCATGGGAATCATGAACAGTTT 251
|| ||||||||||| ||||| || || || | | ||||| ||||||||||||||||||||
Sbjct 287 AAGCAAGTTCATCCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAACAGTTT 345
Query 252 CATCAACGACACCTTCGAGAAAATTG-C-TCTGGAATCGTCGC-GATTGGCTAGGTATAA 308
||||||||| | |||||||||| ||| | || |||||||||| | ||| | ||||||||
Sbjct 346 CATCAACGATATCTTCGAGAAA-TTGGCATC-GGAATCGTCGAAGCTTG-CGAGGTATAA 402
Query 309 CAAGAAACCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTG-TTGCCTG 367
||||| |||||||| || || |||| || || || || || || || || || ||||
Sbjct 403 TAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTG 461
Query 368 GTGAA-TTAGCGAAGCACGCTGTTTCTGAGGGTACCAAAGCCGTCACCAAATTCACCAGT 426
|||| || ||||| ||||||||||||||||| || || || || ||||||||||||||
Sbjct 462 GTGAGCTT-GCGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAGC 520
Query 427 TCTTAGATT 435
|||| ||||
Sbjct 521 TCTT-GATT 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22225660611
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5