BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09490.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341089 jgi|Araly1|341089|fgenesh1_pg.C_scaffold_3000852 854 0.0
> Ahg341089 jgi|Araly1|341089|fgenesh1_pg.C_scaffold_3000852
Length=1302
Score = 854 bits (462), Expect = 0.0
Identities = 647/732 (88%), Gaps = 29/732 (4%)
Strand=Plus/Plus
Query 290 CCTCACCGCAGCCGCAGCTCTGTTCTCAGCATCGTTTTACTTCGTCAACAAACGCGCCGC 349
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 117 CCTCACCGCAGCCGCAGCTCTGTTCTCAGCATCCTTTTACTTCGTCTACAAACCCGCCGC 176
Query 350 GATGACTCCAGTTGCTGTGGTAGAGACGACACTCGAGAAGCACCTCGAGACACAATCAAA 409
|| |||||| ||||||||||| ||| | ||| | | ||||||| || ||||||
Sbjct 177 GACGACTCCGGTTGCTGTGGT--AGA-G------GAG-A-C-TCTCGAGATACTATCAAA 224
Query 410 CGATGTGAATGCTTTATCATTGCTGACGGAAATCAAATTTAAGTCCGATAAACATGAGCA 469
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 225 CGATGTGAAAGCTTTATCATTGCTGACGGAGATCAAATTTAAGTCCGATAGACATGAGCA 284
Query 470 GGCGATTGTATTTCTGGACCGTCTGATCGAGATCGAGCCATATGAACGAAAATGGCCGGC 529
||| || | | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 285 GGCAATAGAAGTTCTGGACCGTCTGATCGAGATCGAGCCCGATGAACGAAAATGGCCGGC 344
Query 530 TATGAAGGCTCGGATTCTCTCATACCACGGGAAAAGTGAATCAGCAATCGAAGCTTTCGA 589
|||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 345 TATGAAGGCTAGGATTCTCTCATACCACGGAAAAAGCGAATTGGCAATCGAAGCTTTCGA 404
Query 590 GGA-GATTCTCGAAAAGGATCCGATACGCGTCGATGCTTATCATTACTTGGTGATGGAGT 648
|| |||||| || ||||| |||||||| || || |||||||||||||||||||||||||
Sbjct 405 -GAGGATTCTTGAGAAGGACCCGATACGTGTTGACGCTTATCATTACTTGGTGATGGAGT 463
Query 649 ATTACAACTCTAAACCTAAATTAACAGAGATAGAGAAGAGGATCAACAAAGTGATTCGAA 708
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 464 ATTACAACTCTAAACCCAAATTAACAGAGCTAGAGAAGAGAATCAACAAAGTGATTCGAA 523
Query 709 GATGCAAGAAGGAGAAGAAGACGAAAGAGATTC-TCGGTTTCAGAATGTTGATCGCACAG 767
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||
Sbjct 524 GATGCAAGAAGGAGAAGAAGGCGAAAGAGATTTGT-GGTTTCAGAATGTTGATCGCGCAG 582
Query 768 ATTAGGTTTATTGAAGGAAAATCAGTTGAAGCAATTCGGATTTGTGAAGAGCTAGTGAAG 827
|| | |||||| ||||||| ||| ||||||| |||||||||||||||||| |||||||
Sbjct 583 ATCAAGTTTATCCAAGGAAACTCACTTGAAGCCATTCGGATTTGTGAAGAGTTAGTGAAA 642
Query 828 GAAGATCCA-AATGATTTCACTATATATTTGTTTCAAGGAGTCGTGTATACATTGATGAA 886
|| |||||| || ||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 643 GATGATCCAGAA-GATTTCACTATATATCTGTTTCAAGGAATCGTGTATATATTGATGAA 701
Query 887 TAAGGGAGAGGAAGCTGCGAAGCAATTTGAGCATGTTGCTAGGGTTATACCAAGGAATCA 946
||||| ||||||||||||||||||||| ||||| ||||| |||||||| || | ||||||
Sbjct 702 TAAGGAAGAGGAAGCTGCGAAGCAATTCGAGCAAGTTGCAAGGGTTATGCCGATGAATCA 761
Query 947 CCCGTCTAGAGAGACTGCCGCGAGGACCACGAACTCAAATG-AATGGAGAGTCATCGTAG 1005
||||| ||||||||||| | | |||| |||||| | ||||||||||||||||||
Sbjct 762 TCCGTCCAGAGAGACTGC-G--A---CCAC---CTCAAA-GCAATGGAGAGTCATCGTAG 811
Query 1006 CTTACGATAATG 1017
||||||||||||
Sbjct 812 CTTACGATAATG 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5