BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09520.1
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928623 jgi|Araly1|928623|scaffold_301080.1 2865 0.0
> Ahg928623 jgi|Araly1|928623|scaffold_301080.1
Length=1928
Score = 2865 bits (1551), Expect = 0.0
Identities = 1778/1890 (94%), Gaps = 6/1890 (0%)
Strand=Plus/Plus
Query 1 ATGATGACGAGAAAAGCAATGATAAACATTTGTTGCGTGGCCACAACGCCGTCCAAGTAT 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct 22 ATGATGACGAGAAAAGCAATGATAAACATTTGTTGCGTCGCGACAACGCCGTCGAAGCAT 81
Query 61 CCACCTCCTCCTCCTCTTACGTTAACCCCTCGCCAGAGTTTGGAATCGGCGGCTATCTAT 120
||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 82 CCACCACCTCCTCCTCTTACGTTAACGCCTCGCCAGAGTTTGGAATCCGCGGCAATCTAT 141
Query 121 GGAGTCATTGAATCCGCGGCGGATATAATCGAGAGATGGAACACTGAGACCAACACTTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GGAGTCATTGAATCCGCGGCGGATATAATCGAGAGATGGAACACTGAGACCAACACTTTC 201
Query 181 GCTAAAGTTACTTGTATGTTCTACGAGAACAAACCTGAAGCCATGATGTTCATCGAACGT 240
|| |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 202 GCAAAAGTTACTTCTATGTTCTACGAGAACAAACAAGAAGCCATGGTGTTCATCGAACGA 261
Query 241 GTGAAGGATCTTCAGAAGACGATGGACGTACTCGTGAGTGAGGATCCAAACTCTGAGAGA 300
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct 262 GTGAAGGATCTTCAGAAGACTATGGACGTACTGGTGAGTGAAGATCCAAACTCGGAGAGG 321
Query 301 CTCTTGAGATCGCATAAGCTTATGCAAATCGCTATGAAGAGGTTGCAAAAAGAGTTTTAC 360
||||||||| | ||||| |||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 322 CTCTTGAGAGCACATAAACTTATGCAGATCGCTATGAAGAGGTTACAAAAGGAGTTTTAC 381
Query 361 CAGATTCTTTCGATGAATCGTGCTTATCTTGATCCAGAATCAGTGTCCACTCGATCTTCA 420
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 382 CAGATTCTTTCGATGAATCGTGCTTATCTTGATCCAGAATCAGTCTCTACTCGTTCTTCA 441
Query 421 CTTACTTCCGCAAGATCTAGCTACTCAGATTTCCCCGACTATGTCGAAGATCTAGATACG 480
|||||||| || |||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 442 CTTACTTCAGCGAGATCTAGCTACTCCGATTTCCCCGAAGATGTTGAAGATCTAGATACA 501
Query 481 ATCATCGAACTGGAGGAGGTTTCTACCAACGTCATGACGGATTTGAAATCCATCGCTGAG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 502 ATCATCGAACTGGAGGAGGTTTCTAGCAACGTCATGACGGATTTGAAATCCATCGCTGAG 561
Query 541 TGCATGATCGGTTCTGGTTACGCTAAGGAGTGTCTAAGCATCTATAAAAGCATTAGGAAA 600
|||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| ||||
Sbjct 562 TGCATGATTGGTTCTGGTTATGCTAAGGAGTGTTTAAGCATATATAAAAGCATTA-GAAA 620
Query 601 -TCGATCATCGACGAAGGGATTTATCGTTTAGAAGTGGAGAAGACGAGTACTGGGAAGGT 659
||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 621 GTCGATAATCGACGAAGGGATCTATCGTTTAGAAGTCGAGAAGACGAGTACGGGGAAGGT 680
Query 660 GAAGAAAATGTCATGGGAAGTTATGGAGTTGAAGATCAGAAGCTGGTTAAAAGCAGTCAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GAAGAAAATGTCATGGGAAGTTATGGAGTTGAAGATCAGAAGCTGGTTAAAAGCAGTCAA 740
Query 720 AGTTTCTATGGAGACTCTTTTCAAAGGTGAGAAGATTTTGTGTGATCATGTCTTTGAATC 779
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 741 AGTTTCCATGGAGACTCTTTTCAAAGGCGAGAAGATTTTGTGTGACCATGTCTTTGAATC 800
Query 780 CTCTGACGCAATTAGAGAGTCTTGCTTTAGTGATATCTCTCGAGACGGTGCGCTTCTTCT 839
|||||| ||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 801 CTCTGATGCAATTAGAGAGTCTTGCTTTAGTGCTATCTCTCGTGATGGTGCGCTTCTTCT 860
Query 840 CTTTGGATTCCCGGAGATCATTAATACTAAAACTAGCAAGAAACACTCTCCGCCGGAGAA 899
|||||||||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||
Sbjct 861 CTTTGGATTCCCAGAGATCATTGCTACCAAAACTAGCAAGAAAAACTCGCCGCCGGAGAA 920
Query 900 AGTTTTCCGGCTGCTTGACATGTACACCGCCATCGCCGGAAACTGGCAAGCGATTGAGTC 959
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 921 AGTTTTCCGGCTGCTTGACATGTATACTGCCATCGCCGGAAACTGGCAAGCGATTGAATC 980
Query 960 TATCTTCTCGTTTGATTCGATCTCCGTCGTCAGATCTCTTGCTCTTAAATCTCTAATCTC 1019
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 981 TATCTTCTCGTTTGATTCGATCTCCGTCGTCAGATCTCTAGCACTTAAATCTCTAATCTC 1040
Query 1020 TCTCAGCGAATCAATTCGATCACTACTTGTGGAATTCGAATCCGGAATCCAGAAGGACTC 1079
|||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 1041 TCTCAGTGAATCGATTCGATCACTACTGGTGGAATTCGAATCCGGAATTCAGAACGATTC 1100
Query 1080 GTCGAAGGTGGTGGTTCCCGGCGGAGGAGTACATCCACTGACGATCTCCGTCATGGATCA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GTCGAAGGTGGTGGTTCCCGGCGGAGGAGTACATCCACTGACGATCTCCGTCATGGATCA 1160
Query 1140 CCTCTCTCTCCTCGCTGACTACAGCAACGTACTAGTCGATATCCTCGCCGGATCTCCACC 1199
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1161 TCTCTCTCTCCTCGCTGACTACAGCAACGTACTCGTTGATATCCTCGCCGGGTCTCCACC 1220
Query 1200 ACCGGACAGGTCGCTGTTACCGGAGTCTTACTTCAACGTCTCAGAATCCGACGACTCTCC 1259
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACCGGACAGATCGCTGCTACCGGAGTCTTACTTCAACGTCTCAGAATCCGACGACTCTCC 1280
Query 1260 TTCGTCGGAGCTGACGATCCGTTTCGCTTGGATCATCCTCGTCCTCCTTTGTAAAATCGA 1319
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1281 TTCGTCGGAGCTGACGATCAGATTCGCTTGGCTCATCCTCGTCCTCCTTTGTAAAATCGA 1340
Query 1320 TCGTAAATCAATTCACTACAAAGACTTCTCTATACAGTATCTCTTCCTCACCAACAATCT 1379
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 1341 TCGTAAATCAATTCACTACAAAGATTTCTCTGTACAGTATCTCTTCCTCACCAACAACCT 1400
Query 1380 CCAGCACGTGGTCTCACGTGCTCGTTCCTCAAACCTGAAGAACCTTCTCGGCGAGGATTG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1401 CCAGCACGTGGTCTCACGTGCTCGTTCCTCAAACCTGAAGAACCTTCTCGGGGAGGATTG 1460
Query 1440 GATCACGAGACATTTCGCTAAGATGAGACAATTCGCCGGCAGCTATAAGCGGCTAGCTTG 1499
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1461 GATCACGAGACATTTCGCTAAGATGAGACAATTCGCCGGGAGCTATAAGCGACTGGCTTG 1520
Query 1500 GGGACCGGTGGTTGCTACTTTACCTGAGAATCGTACGGTGGAGATGACGCCGGAGGAAGT 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1521 GGGACCGGTGGTTGCTACTTTACCTGAGAATCGTACGGTGGAGATGACGCCGGAAGAAGT 1580
Query 1560 GAAGGAGCGGTTTGAAAAATTCAGCGAGAGCTTCGAAAACGCGTATAG-TAAGCACAGTG 1618
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1581 CAAGGAGCGGTTTGAAAAATTCAGCGAGAGCTTCGAAAACGCGTAC-GCTAAACACAGTG 1639
Query 1619 TCTGCGTCGTAGCTGATCCAAATATACGAGACGAGATCAAAGTATCGATATCGAGAAAGC 1678
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1640 TCTGCGTCGTAGCTGATCCAAATCTACGAGACGAGATCAAAGTATCGATAGCGAGAAAGC 1699
Query 1679 TGGTGCCGATCTATCGCGAGTTTTACAACACGAGAGGTTCTGTTATCTTGG-GAGAAGGC 1737
|||||||||| |||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 1700 TGGTGCCGATTTATCGCGAGTTTTACAACACGAGAGGTTCTGTTATCTTGGCGGGA-GCC 1758
Query 1738 GATGGCGCGAGAAACCTGAACTCAGTTGTCCGATTTACCCCTGAAGATATTGAAAACTAT 1797
| |||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1759 GGTGGCGCCAGAAACTTGAGCTCAGTTGTCCGATTTACCCCTGAGGATATTGAAAACTAT 1818
Query 1798 TTGTCTGATTTGTTCAGAGAGAAGGGTAGTTCGGGGAATTCGTCAGCCTCTTCTCCTTCC 1857
||||||||| |||||| |||||||||| ||||||||||||| || || ||||||||||||
Sbjct 1819 TTGTCTGATATGTTCACAGAGAAGGGTGGTTCGGGGAATTCATCTGCATCTTCTCCTTCC 1878
Query 1858 TCTTGTCGGTCAAGGCAATCCATGTCCTAA 1887
||||||||||| |||||||||||||||||
Sbjct 1879 TCTTGTCGGTCTGGGCAATCCATGTCCTAA 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70885945945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5