BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09530.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928624 jgi|Araly1|928624|scaffold_301081.1 2861 0.0
> Ahg928624 jgi|Araly1|928624|scaffold_301081.1
Length=1957
Score = 2861 bits (1549), Expect = 0.0
Identities = 1798/1920 (94%), Gaps = 9/1920 (0%)
Strand=Plus/Plus
Query 1 ATGAGGAGCAAGAGCGGTTTTAGTTTCTTCTCTAAAATGACTTCTTCAAGGAAGAGGCCT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 21 ATGAGGAGCAAGAGCGGTTTTAGTTTCTTCTCTAAGATGACTTCTTCAAGGAAGAGGCCT 80
Query 61 TCTCTCTCACTACCTAGCAAGAGTCACGAGTCCA-CGGATGTTAACAAGACCATCGACAA 119
||||||||| |||||||||||||| |||||| || ||||| | |||||||||||||||||
Sbjct 81 TCTCTCTCAATACCTAGCAAGAGTTACGAGT-CATCGGATATCAACAAGACCATCGACAA 139
Query 120 TGCAGCCGAGATTATCGAGAAATGGAACACAGAGTATGTTTCC-GATAAGAAATTTTATT 178
|||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||
Sbjct 140 TGCAGCCGAGATTATCGAGAAATGGAACACCGAGTATGTTTCCTCA-AATAAATTTTATT 198
Query 179 CTCTGTTTTGCGAGAGCAAGCGAGACGCGAAGAAGTTTGTTAAACGCGTGAAGGAACTGC 238
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 199 CTCTGTTTTGCGAGAGCAAGCGAGAAGCGAAAAAGTTTGTTAAACGCGTGAAGGAACTGC 258
Query 239 AGAACGCCATGGATTTGTTGATTAGAGAAGATCCAAATTCGGAGAAACTCCTTAGAGCTC 298
||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 259 AGAACGCTATGGATATGTTGATTAGAGAAGATCCGAATTCGGAGAATCTCCTTAGAGCTC 318
Query 299 AGAATCTGATGCAGATCGCTATGAAACGACTTCAGAAAGAGTTTCTCCAGATTCTTTCAA 358
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 319 AGAATCTAATGCAGATCGCCATGAAACGACTTCAGAAAGAGTTTCTCCAGATTCTTTCGA 378
Query 359 TGAACCGTGCGCATTTGGATCCTGAATCCATCTCCTCTAGATCTCCTACATCTGTCGTAT 418
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 379 TGAACCGTGCGCATTTGGATCCTGAATCCGTCTCCTCTAGATCGCCTACATCTGTCGTAT 438
Query 419 CGAACGATGATGATGTTTGGCACGAGTCTCGTTCAGCTGGTGACTCCATCATCGAAGTTG 478
| |||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 439 CCAACGATGACGATATTTGGCACGAGTCTCGTTCAGCTAGTGATTCCATCATCGAAGTCG 498
Query 479 AGGAGGTGTCAAAGAACTCTAGGACAGAGCTGAAATCCATAGCAGATTGCATGATCGCTG 538
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 499 AGGAGGTGTCAAAGAATTCTAGGACAGAACTGAAATCCATAGCAGACTGCATGATCGCTG 558
Query 539 CGGGTTGTGCGAAAGAGTGTGCGACTACTTATAAATCCATTCGAAAATCGATAGTTGATG 598
| |||| ||| ||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 559 CAGGTTATGCAAAAGAGTGTGCGAGTACTTATAAATCTATTCGAAAATCGATAGTCGATG 618
Query 599 AATCGATTTACCGTCTCGGAGTAGAGAATATAAGCTCATCCAAGGCGAAAAAGATGCCAT 658
|||| ||||| ||||| ||||||||||| || || || ||||||||||||||||||||||
Sbjct 619 AATCCATTTATCGTCTTGGAGTAGAGAAAATCAGTTCTTCCAAGGCGAAAAAGATGCCAT 678
Query 659 GTGAGGTTGTTGAGTTGAAGATGAATAGGTGGATAGAGGCGGTTAAGGTCTCGATGAAGA 718
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 679 GTGAAGTTGTTGAGTTGAAGATGAATAGGTGGATTGAGGCGGTTAAGGTCTCGATGAAGA 738
Query 719 CTCTCTTCAATGGCGAAAAGACTCTATGCGATGAAATCTTCGAATCCTCTGTTTCTCTTA 778
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct 739 CTCTCTTCAATGGCGAAAAGAGTCTATGCGATGATATCTTTGAATCCTCTGTTTCTCTTA 798
Query 779 GAGAGTTTTGTTTCCGAGACATCTCCAAGGAAGGAGCTCTTCTTCTGTTTGGATTCCCGG 838
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GGGAGTCTTGTTTCCGAGACATCTCCAAGGAAGGAGCTCTTCTTCTGTTTGGATTCCCGG 858
Query 839 AAACTATCACCTTAAGAGACAAGAAAAATCCACATCCGGAGAAGATTTTCCCGTTGCTAG 898
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 859 AAACCATCGCCTTAAGAGACAAGAAAAATCCAAATCCGGAGAAGATTTTCCCGTTGCTAG 918
Query 899 ATATGTATTGCACGATCACAGATAACTTGCTTGCGATTGAAGCAATCTTCTCGTTTCCAT 958
||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 919 ATATGTATTGCACGATCACCGAGAACTTGCTTGCGATTGAATCGATCTTCTCGTTTCCAT 978
Query 959 CAATTTCGAATGTTCGAACTCAAGCTCACAGCTCACTTAGCCGACTAAGCGAGTCAATTC 1018
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 979 CAATTTCGATTGTTCGAACTCAAGCTCACAGCTCACTTAGCCGACTAAGTGAGTCAATTC 1038
Query 1019 TTGCTCACTTGATGGATTTTGAATCTCAAATACGTAAAGACTCGTCCAAGACAGTGGTTC 1078
|| |||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1039 TTTCTCATTTGGTGGATTTTGAATCTGAAATCCGTAAAGACTCGTCCAAGACAGTGGTTC 1098
Query 1079 GTGGTGGAGGAGTTCATCCGATGACTATCTCCGCCATGAATCACATCTCTCGACTCGCGG 1138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1099 GTGGTGGAGGAGTTCATCCGATGACTATCTCCGCCATGAATCACATCTCCCGACTCGCGG 1158
Query 1139 AATACAGTAACGCTCTCATTAATATACTCAAGGGATCATCATCATCATCTTCCGCTAAAG 1198
||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct 1159 AATACAGTACCGCTCTCACGGATATCCTCAAGGGATCATCATCATCATCTTCGGCTAAAT 1218
Query 1199 CATTGCTTCCTAAATCTTACTTCAATGTCTCAGAATCTGAAGAATCTCCAG-TGTCGGAG 1257
||||||||||||||||||||||||||||||||||||| ||||||||||| | | || |||
Sbjct 1219 CATTGCTTCCTAAATCTTACTTCAATGTCTCAGAATCCGAAGAATCTCCGGCT-TCAGAG 1277
Query 1258 CTAAAAGCACGATTCGCGTGGATGATTCTCGTCCTCCTCTGTAAAATCGACGGCAAAGCT 1317
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1278 CTAAAAGTACGATTCGCGTGGATGATTCTCGTCCTCCTCTGTAAAATCGATGGCAAAGCT 1337
Query 1318 GAAATGTACAAGGACTTCTCAATGCAGTATCTCTTCTTAGCCAACAATCTCCAACACGTT 1377
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1338 GAGATGTACAAGGACTTCTCGATGCAGTATCTCTTCTTAGCCAACAATCTCCAACATGTT 1397
Query 1378 GTCTCACGTGCTCGATCCACGAACGTGAAGCATGTTCTCGGCAACGATTGGATAGCGAAA 1437
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 1398 GTCTCACGTGCTCGATCCACGAACGTGAAGGATGTTCTCGGCGACGATTGGATCGCGAAG 1457
Query 1438 AACTCAGAGAAAGTTAGACAGTTCGCAAGAAGCTACGAGCGGTTGGCATGGGGTCCATTG 1497
| || ||||||||||| ||||| ||||||||||| ||| || | |||||||||||||||
Sbjct 1458 CATTCCGAGAAAGTTAGGCAGTTTGCAAGAAGCTATGAGAGGCTAGCATGGGGTCCATTG 1517
Query 1498 GCGTCGATGTGTCCGGCGATTAGTACTTCGGAGGCGGTGGAGATGTCGCCCGAAGAAGCG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GCGTCGATGTGTCCGGCGATTAGTACTTCGGAGGCGGTGGAGATGTCGCCCGAAGAAGCG 1577
Query 1558 ATGATGCAATTCAAAAAGTTCAACGAGACTTTCGAGAGCACGTGCGAGGCACAGAGTGAG 1617
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1578 ATGATGCAATTCAAAAAGTTCAACGAGACTTTCGAGAACACGTGCGAGGCACAGAGTGAG 1637
Query 1618 TGCATCGTACTAGATCCGAAGCTGTTGGACGAGATGAGAATTTCGATCGGGAGAAAACTG 1677
||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1638 TGCATTGTACTTGATCCGAAACTATTGGACGAGATGAGAATTTCGATAGGGAGAAAACTG 1697
Query 1678 TTACCGGTTTACCGCGATTTTTACAACGCTCATAGAAATGCCGTTATGTTAGCGGGAACG 1737
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 TTGCCGGTTTACCGCGATTTTTACAACGCTCATAGAAATGCCGTTATGTTAGCGGGAACG 1757
Query 1738 GAAGGCCAGTGGAATGTCCGATATAACCCTGAAGATATTGGAAACCACTTGTCGGAGCTG 1797
||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 1758 GAAGGTGAGTGGAATGTCCGATATACCCCTGAAGATATCGGAAACCACTTGTCAGAGCTG 1817
Query 1798 TTTAGCGGAAAGGGTATTTCGGAGAAAGGATATGTCTGTACGCCAGATTTTTGT---GTT 1854
|||||||| |||||||||| |||||| |||||| |||||||||||||||||| |||
Sbjct 1818 TTTAGCGGGAAGGGTATTTTGGAGAATCAATATGTTTGTACGCCAGATTTTTGTCTTGTT 1877
Query 1855 ACAACACCTACTCCAACTCCTGTACGAAAGACTCGATCTTTGTCATGCAGAAGATTTTGA 1914
|||||| ||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 1878 ACAACAGCTACTCCAACTCCTGGACGAAAGACTCGATCTTTATCATGCAGAAAATTTTGA 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5