BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09530.1 Length=1914 Score E Sequences producing significant alignments: (Bits) Value Ahg928624 jgi|Araly1|928624|scaffold_301081.1 2861 0.0 > Ahg928624 jgi|Araly1|928624|scaffold_301081.1 Length=1957 Score = 2861 bits (1549), Expect = 0.0 Identities = 1798/1920 (94%), Gaps = 9/1920 (0%) Strand=Plus/Plus Query 1 ATGAGGAGCAAGAGCGGTTTTAGTTTCTTCTCTAAAATGACTTCTTCAAGGAAGAGGCCT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 21 ATGAGGAGCAAGAGCGGTTTTAGTTTCTTCTCTAAGATGACTTCTTCAAGGAAGAGGCCT 80 Query 61 TCTCTCTCACTACCTAGCAAGAGTCACGAGTCCA-CGGATGTTAACAAGACCATCGACAA 119 ||||||||| |||||||||||||| |||||| || ||||| | ||||||||||||||||| Sbjct 81 TCTCTCTCAATACCTAGCAAGAGTTACGAGT-CATCGGATATCAACAAGACCATCGACAA 139 Query 120 TGCAGCCGAGATTATCGAGAAATGGAACACAGAGTATGTTTCC-GATAAGAAATTTTATT 178 |||||||||||||||||||||||||||||| |||||||||||| | || |||||||||| Sbjct 140 TGCAGCCGAGATTATCGAGAAATGGAACACCGAGTATGTTTCCTCA-AATAAATTTTATT 198 Query 179 CTCTGTTTTGCGAGAGCAAGCGAGACGCGAAGAAGTTTGTTAAACGCGTGAAGGAACTGC 238 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 199 CTCTGTTTTGCGAGAGCAAGCGAGAAGCGAAAAAGTTTGTTAAACGCGTGAAGGAACTGC 258 Query 239 AGAACGCCATGGATTTGTTGATTAGAGAAGATCCAAATTCGGAGAAACTCCTTAGAGCTC 298 ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 259 AGAACGCTATGGATATGTTGATTAGAGAAGATCCGAATTCGGAGAATCTCCTTAGAGCTC 318 Query 299 AGAATCTGATGCAGATCGCTATGAAACGACTTCAGAAAGAGTTTCTCCAGATTCTTTCAA 358 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 319 AGAATCTAATGCAGATCGCCATGAAACGACTTCAGAAAGAGTTTCTCCAGATTCTTTCGA 378 Query 359 TGAACCGTGCGCATTTGGATCCTGAATCCATCTCCTCTAGATCTCCTACATCTGTCGTAT 418 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 379 TGAACCGTGCGCATTTGGATCCTGAATCCGTCTCCTCTAGATCGCCTACATCTGTCGTAT 438 Query 419 CGAACGATGATGATGTTTGGCACGAGTCTCGTTCAGCTGGTGACTCCATCATCGAAGTTG 478 | |||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||| | Sbjct 439 CCAACGATGACGATATTTGGCACGAGTCTCGTTCAGCTAGTGATTCCATCATCGAAGTCG 498 Query 479 AGGAGGTGTCAAAGAACTCTAGGACAGAGCTGAAATCCATAGCAGATTGCATGATCGCTG 538 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 499 AGGAGGTGTCAAAGAATTCTAGGACAGAACTGAAATCCATAGCAGACTGCATGATCGCTG 558 Query 539 CGGGTTGTGCGAAAGAGTGTGCGACTACTTATAAATCCATTCGAAAATCGATAGTTGATG 598 | |||| ||| ||||||||||||| |||||||||||| ||||||||||||||||| |||| Sbjct 559 CAGGTTATGCAAAAGAGTGTGCGAGTACTTATAAATCTATTCGAAAATCGATAGTCGATG 618 Query 599 AATCGATTTACCGTCTCGGAGTAGAGAATATAAGCTCATCCAAGGCGAAAAAGATGCCAT 658 |||| ||||| ||||| ||||||||||| || || || |||||||||||||||||||||| Sbjct 619 AATCCATTTATCGTCTTGGAGTAGAGAAAATCAGTTCTTCCAAGGCGAAAAAGATGCCAT 678 Query 659 GTGAGGTTGTTGAGTTGAAGATGAATAGGTGGATAGAGGCGGTTAAGGTCTCGATGAAGA 718 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 679 GTGAAGTTGTTGAGTTGAAGATGAATAGGTGGATTGAGGCGGTTAAGGTCTCGATGAAGA 738 Query 719 CTCTCTTCAATGGCGAAAAGACTCTATGCGATGAAATCTTCGAATCCTCTGTTTCTCTTA 778 ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| Sbjct 739 CTCTCTTCAATGGCGAAAAGAGTCTATGCGATGATATCTTTGAATCCTCTGTTTCTCTTA 798 Query 779 GAGAGTTTTGTTTCCGAGACATCTCCAAGGAAGGAGCTCTTCTTCTGTTTGGATTCCCGG 838 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 GGGAGTCTTGTTTCCGAGACATCTCCAAGGAAGGAGCTCTTCTTCTGTTTGGATTCCCGG 858 Query 839 AAACTATCACCTTAAGAGACAAGAAAAATCCACATCCGGAGAAGATTTTCCCGTTGCTAG 898 |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 859 AAACCATCGCCTTAAGAGACAAGAAAAATCCAAATCCGGAGAAGATTTTCCCGTTGCTAG 918 Query 899 ATATGTATTGCACGATCACAGATAACTTGCTTGCGATTGAAGCAATCTTCTCGTTTCCAT 958 ||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||| Sbjct 919 ATATGTATTGCACGATCACCGAGAACTTGCTTGCGATTGAATCGATCTTCTCGTTTCCAT 978 Query 959 CAATTTCGAATGTTCGAACTCAAGCTCACAGCTCACTTAGCCGACTAAGCGAGTCAATTC 1018 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 979 CAATTTCGATTGTTCGAACTCAAGCTCACAGCTCACTTAGCCGACTAAGTGAGTCAATTC 1038 Query 1019 TTGCTCACTTGATGGATTTTGAATCTCAAATACGTAAAGACTCGTCCAAGACAGTGGTTC 1078 || |||| ||| |||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1039 TTTCTCATTTGGTGGATTTTGAATCTGAAATCCGTAAAGACTCGTCCAAGACAGTGGTTC 1098 Query 1079 GTGGTGGAGGAGTTCATCCGATGACTATCTCCGCCATGAATCACATCTCTCGACTCGCGG 1138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1099 GTGGTGGAGGAGTTCATCCGATGACTATCTCCGCCATGAATCACATCTCCCGACTCGCGG 1158 Query 1139 AATACAGTAACGCTCTCATTAATATACTCAAGGGATCATCATCATCATCTTCCGCTAAAG 1198 ||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||| Sbjct 1159 AATACAGTACCGCTCTCACGGATATCCTCAAGGGATCATCATCATCATCTTCGGCTAAAT 1218 Query 1199 CATTGCTTCCTAAATCTTACTTCAATGTCTCAGAATCTGAAGAATCTCCAG-TGTCGGAG 1257 ||||||||||||||||||||||||||||||||||||| ||||||||||| | | || ||| Sbjct 1219 CATTGCTTCCTAAATCTTACTTCAATGTCTCAGAATCCGAAGAATCTCCGGCT-TCAGAG 1277 Query 1258 CTAAAAGCACGATTCGCGTGGATGATTCTCGTCCTCCTCTGTAAAATCGACGGCAAAGCT 1317 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1278 CTAAAAGTACGATTCGCGTGGATGATTCTCGTCCTCCTCTGTAAAATCGATGGCAAAGCT 1337 Query 1318 GAAATGTACAAGGACTTCTCAATGCAGTATCTCTTCTTAGCCAACAATCTCCAACACGTT 1377 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1338 GAGATGTACAAGGACTTCTCGATGCAGTATCTCTTCTTAGCCAACAATCTCCAACATGTT 1397 Query 1378 GTCTCACGTGCTCGATCCACGAACGTGAAGCATGTTCTCGGCAACGATTGGATAGCGAAA 1437 |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| Sbjct 1398 GTCTCACGTGCTCGATCCACGAACGTGAAGGATGTTCTCGGCGACGATTGGATCGCGAAG 1457 Query 1438 AACTCAGAGAAAGTTAGACAGTTCGCAAGAAGCTACGAGCGGTTGGCATGGGGTCCATTG 1497 | || ||||||||||| ||||| ||||||||||| ||| || | ||||||||||||||| Sbjct 1458 CATTCCGAGAAAGTTAGGCAGTTTGCAAGAAGCTATGAGAGGCTAGCATGGGGTCCATTG 1517 Query 1498 GCGTCGATGTGTCCGGCGATTAGTACTTCGGAGGCGGTGGAGATGTCGCCCGAAGAAGCG 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1518 GCGTCGATGTGTCCGGCGATTAGTACTTCGGAGGCGGTGGAGATGTCGCCCGAAGAAGCG 1577 Query 1558 ATGATGCAATTCAAAAAGTTCAACGAGACTTTCGAGAGCACGTGCGAGGCACAGAGTGAG 1617 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1578 ATGATGCAATTCAAAAAGTTCAACGAGACTTTCGAGAACACGTGCGAGGCACAGAGTGAG 1637 Query 1618 TGCATCGTACTAGATCCGAAGCTGTTGGACGAGATGAGAATTTCGATCGGGAGAAAACTG 1677 ||||| ||||| |||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 1638 TGCATTGTACTTGATCCGAAACTATTGGACGAGATGAGAATTTCGATAGGGAGAAAACTG 1697 Query 1678 TTACCGGTTTACCGCGATTTTTACAACGCTCATAGAAATGCCGTTATGTTAGCGGGAACG 1737 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1698 TTGCCGGTTTACCGCGATTTTTACAACGCTCATAGAAATGCCGTTATGTTAGCGGGAACG 1757 Query 1738 GAAGGCCAGTGGAATGTCCGATATAACCCTGAAGATATTGGAAACCACTTGTCGGAGCTG 1797 ||||| |||||||||||||||||| |||||||||||| |||||||||||||| |||||| Sbjct 1758 GAAGGTGAGTGGAATGTCCGATATACCCCTGAAGATATCGGAAACCACTTGTCAGAGCTG 1817 Query 1798 TTTAGCGGAAAGGGTATTTCGGAGAAAGGATATGTCTGTACGCCAGATTTTTGT---GTT 1854 |||||||| |||||||||| |||||| |||||| |||||||||||||||||| ||| Sbjct 1818 TTTAGCGGGAAGGGTATTTTGGAGAATCAATATGTTTGTACGCCAGATTTTTGTCTTGTT 1877 Query 1855 ACAACACCTACTCCAACTCCTGTACGAAAGACTCGATCTTTGTCATGCAGAAGATTTTGA 1914 |||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| Sbjct 1878 ACAACAGCTACTCCAACTCCTGGACGAAAGACTCGATCTTTATCATGCAGAAAATTTTGA 1937 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71914382560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5