BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09540.1
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478272 jgi|Araly1|478272|fgenesh2_kg.3__973__AT3G09540.1 1868 0.0
> Ahg478272 jgi|Araly1|478272|fgenesh2_kg.3__973__AT3G09540.1
Length=1426
Score = 1868 bits (1011), Expect = 0.0
Identities = 1276/1396 (91%), Gaps = 49/1396 (4%)
Strand=Plus/Plus
Query 1 GTTCAGTTGAAACAAAGAGCAATTATATCCCAAAAATACAAAAACTGAAACTGTCCGAAA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTTCAGTTGAAACAAAGAGCAATTATATCCCAAAAATAC-AAAACTGAAACTGTCCGAAA 59
Query 61 TTGAATTCAACATTTGTTATATAAATTAGATATGGGAAACTTACATGGCATTCACAGATC 120
|| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TTAAATTCAACATTTG-T-TATAAATTAGATATGGGAAACTTACATGGCCTTCACAGATC 117
Query 121 CCATCACGGCGGTTCTAATTTTCCCGGCGAA-GCTCCCAATTCACCTTTCCCACCACCAT 179
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 118 CCATCACGGCGGTTCTAATTTTCCCGGCGAATCCT-CCAATTCACCTTTCCCACCACCAT 176
Query 180 ATACAGCCGCTCCAGCTCCAGCTCCAGCTCCGTCATCGCCATCCGATCACCACATGACAG 239
|| | || | ||||||| | | ||| | ||||||||||||| | |
Sbjct 177 AT--A-------CA--T-CAGCTCC-G---C--CAT-----T-CGATCACCACATGGCGG 212
Query 240 TGGGACCTTATTGCCACGTAGACTCCAGCCTCCGCTCTCTCGCCGGAAAGGCCGAAGGTT 299
||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 213 TGGGACCTTATTGCCACGTAGACTCCAGCCTCCGCTCTCTCGCTGGTAAGGCTGAGGGTT 272
Query 300 TCGGCCGCGCCGCCGTTGGTGGTCTAAATGGTCCGATTTGCCACGTCACTTCTTTAGCTG 359
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTGGCCGTGCCGCCGTTGGTGGTCTAAATGGTCCGATTTGCCACGTCACTTCTTTAGCTG 332
Query 360 ACGAGGGTCCAGGATCGTTGCGAGAGGCTTGCAAGAGGCCAGAACCTTTATGGATCGTGT 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 333 ACGAGGGTCCAGGATCGTTGCGAGAGGCTTGCAAGAGGCCAGAACCGTTATGGATTGTGT 392
Query 420 TCGATGTATCGGGAACGATCAATCTGTCTTCGTTTGTCAACGTATCATCGCACACAACGG 479
||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 393 TCGATGTGTCGGGAACGATCAATCTCTCTTCGTTTGTGAGCGTATCATCGCACACAACGG 452
Query 480 TGGACGGGAGAGGACAAAAAGTGAAGATAACGGGAAAAGGGTTAAGGCTAAAAGAGTGTG 539
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TGGACGGAAGAGGACAAAAGGTGAAGATAACGGGAAAAGGGTTAAGGCTAAAAGAGTGTG 512
Query 540 AAAACGTTATAATCTGCAATCTTGAATTTGAAGGCGGTGTGGGACCAGACGCAGACGCTA 599
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 513 AAAACGTTATAATCTGCAACCTTGAATTTGAAGGCGGTGTGGGACCAGACGCAGACGCCA 572
Query 600 TTCAGATCAAACCAAAATCGCACAATATTTGGATTGATCGGTGTAGTCTCAAGAATTACT 659
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 573 TTCAGATCAAACCAAAATCACACAACATTTGGATTGATCGGTGTAGTCTCAAGAATTACT 632
Query 660 ATGATGGTTTGATTGATATCACACGAGAAAGCACTGACATCACTGTCTCAAGATGCCATT 719
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 633 ATGATGGTTTGATCGATATCACACGAGAAAGCACTGACATTACTGTCTCAAGATGCCATT 692
Query 720 TCATGAACCACAACAAAACTATGTTAATAGGAGCGGACACAAGTCACGTTACGGACCGAT 779
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TCATAAACCACAACAAGACGATGTTAATAGGAGCGGACACAAGTCACGTTACGGACCGAT 752
Query 780 GCATAAGAGTTACGATACATCACTGCTTCTTCGACGGTACACGTCAGCGACACCCTCGCG 839
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 753 GCATAAGAGTTACGATACATCACTGTTTTTTTGACGGTACACGTCAGCGACACCCTCGCG 812
Query 840 TTCGCTTCGCAAAAGTCCATCTCTTCAACAACTACACTCGTCATTGGGCCATTTACGCTG 899
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 813 TTCGCTTTGCAAAAGTCCATCTATTCAACAACTACACTCGTCATTGGGCCATTTACGCTG 872
Query 900 TTGGTGCTGGTGTCGAATCTCAGATACATTCTCAGTGCAACATATATGAAGCTGGTGAAA 959
| ||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 873 TCGGTGCCGGTGTAGAATCTCAGATATATTCTCAGTGCAACATATATGAAGCTAGTGAGA 932
Query 960 AGAAAACTGTCTTTAAGTACATCACTGAGAAGGCCGCTGATAAAGAGAAACCCGGAGCTG 1019
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 933 AGAAAACTGTCTTTAAGTACATCACTGAGAAGGCGGCAGATAAAGAGAAACCCGGAGCTG 992
Query 1020 GATTCGTAAGATCAGAAGGGGATTTGTTGTTGAACGGAGCCAAATCGTGTCTTAGTCAGG 1079
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 993 GATTCGTAAGATCCGAAGGGGATTTGTTTTTGAACGGAGCCAAGTCGTGTCTTAGCCAGG 1052
Query 1080 GCGGAGAGCGCTATGTGTTCTCTCCAATCCAACACTATTCTGAATGGACCGTCGAATCTC 1139
||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| |
Sbjct 1053 GCGGAGAACGCTATGTGTTCTCTCCGACCCAACACTATTCTGAGTGGACCGTCGAATCGC 1112
Query 1140 CAACCGATATACTCAAGAACTATCTGAAACACTCGACCGGCTGGCAGAACCTTCCCCTCC 1199
||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 1113 CAACCGAGATACTCAAGAACTATCTGAAACACTCGACCGGCTGGCTGAACATTCCGCTCC 1172
Query 1200 CACTAGACCGGCCTCCGACCACCGCATAACTATTGCTTAGCG-AAGTGAATTGATTGGAT 1258
||||||||| |||||||| |||| ||||||||| ||| | ||||||||| | |||||
Sbjct 1173 CACTAGACCAACCTCCGACAACCGGTTAACTATTG-TTAATGGAAGTGAATTAAATGGAT 1231
Query 1259 CACTTTTGGCACTACCAAAACTATATTGCAGTAGTTTCTTCCATTTCCACTTAGACAAAC 1318
||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1232 CACTTTTGGCAGTACCAAAATTATATCCCAGTAGTTTCTCCCGCTTCCACTTAGACAAAC 1291
Query 1319 AAAATGATATATCAAATTTGATAGGATTGTCGAATTTTTCCAATTCAAAGTTGAGATATT 1378
||| | | | | |||||||||||||||||||||||||||||||| ||
Sbjct 1292 AAA-T-A------------G---G-ATTGTCGAATTTTTCCAATTCAAAGTTGAGATTTT 1333
Query 1379 AGTTTCAACTAATAAA 1394
||||||||||||||||
Sbjct 1334 AGTTTCAACTAATAAA 1349
Score = 80.5 bits (43), Expect = 3e-14
Identities = 66/77 (86%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1420 GTTATTGTGTATTTTGAGC-T-TGTTTGTATGTATGAATTATCTCCAACTAGATGAATAA 1477
|||| ||| |||||||||| | ||| | ||||||| ||||||| || |||||||||||
Sbjct 1350 GTTAATGTATATTTTGAGCTTATGTGCGCATGTATGGATTATCTTTAATTAGATGAATAA 1409
Query 1478 CAAGTCTGTGGTGGTTG 1494
|||||||||||||||||
Sbjct 1410 CAAGTCTGTGGTGGTTG 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55992660150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5