BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09560.2
Length=3465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317759 jgi|Araly1|317759|fgenesh1_pm.C_scaffold_3000775 2163 0.0
Ahg950084 jgi|Araly1|950084|scaffold_801971.1 255 1e-66
Ahg922470 jgi|Araly1|922470|scaffold_103751.1 244 3e-63
Ahg943019 jgi|Araly1|943019|scaffold_603563.1 241 3e-62
Ahg933778 jgi|Araly1|933778|scaffold_401766.1 241 3e-62
> Ahg317759 jgi|Araly1|317759|fgenesh1_pm.C_scaffold_3000775
Length=2628
Score = 2163 bits (1171), Expect = 0.0
Identities = 1282/1336 (96%), Gaps = 6/1336 (0%)
Strand=Plus/Plus
Query 1797 TGATAAGGATAACGAGGACA-GG-AAGACTGTAGTTTCAGTGGGTGTGACTTCTAGTGTC 1854
||||||| ||||||| || | || | |||||||||||||||||||| |||||||||||||
Sbjct 1296 TGATAAGAATAACGA-GA-ATGGTACGACTGTAGTTTCAGTGGGTGCGACTTCTAGTGTC 1353
Query 1855 GACGAAGGAGAACCCGATACAGATCAGAGATATGAGTTATCACTTTGCAAGGATGAGCTT 1914
||| |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1354 GACTTAGGAAAACCCGATACAGTTCAGAGATATGAGCTATCACTTTGCAAGGATGAGCTT 1413
Query 1915 CGTCAGGGTATGGGACTTAGCGCAGCTGCTGAAGTCTTTGATGCACATATG-ATCTCCAA 1973
|||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||
Sbjct 1414 CGTCAGGGTATGGGACTTCGCGCAGCTGCTGAAGTCTTTGATGCGCAT-CGAATCTCCAT 1472
Query 1974 GGAAGAATATATAAATTCGGCCACATCAATTCTTGAAAGTGAAAATCTGGTTGTTAGGAT 2033
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GGAAGAATATATAAATTCGGCAACATCAATTCTTGAAAGTGAAAATCTGGTTGTTAGGAT 1532
Query 2034 TAGAGAAACGTATATGCCATGGACGAAAGCTGCTCGAATTGTGCTTGGGAAAGCTGTGTT 2093
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1533 TAGAGAAACGTATATGCCATGGACGAAAGCTGCTCGGATTGTGCTTGGGAAAGCTGTGTT 1592
Query 2094 TGATCTAGACTTAGATATCCAGCCAGATGATGTGATTTCTGTGGAGGAAAATGAATCGCC 2153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TGATCTAGACTTAGATATCCAGCCAGATGATGTGATTTCTGTGGAGGAAAATGAATCGCC 1652
Query 2154 TAAGCCCAAGGATGATGAAACTACAATAACTCCTTCTTCATCTGGAACAAGATGGAGACT 2213
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1653 TAAACCCAAGGATGATGAAACTACAATAACTCCTTCTTCATCTGGAAGAAGATGGACACT 1712
Query 2214 CTGGCCGATTCCTTTTAGAAGGGTTAAAACTGTTGAGCATACGGGAAGTAACTCCTCAAG 2273
|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1713 CTGGCCGATTCCTTTTCGAAGGGTTAAAACAGTTGAGCATACAGGAAGTAACTCCTCAAG 1772
Query 2274 CGAAGAAGATCTGTTTGTTGATTCCGAACCTGGCTTACAGAACTCACCGGAAACACAATC 2333
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1773 CGAAGAAGATCTGTTTGTTGATTCTGAACCTGGCTTACAGAACTCACCGGAAACACAATC 1832
Query 2334 AACCACAGAGAGTCGCCATGAGTCTCCGCGTAGACAACTTGTGAGAACTAATGTCCCTAC 2393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1833 AACCACAGAGAGTCGCCATGAGTCTCCGCGTAGACAACTTGTGAGAACTAATGTCCCAAC 1892
Query 2394 CAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTT 2453
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1893 CAATGAACAAATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACTTTTAGTTT 1952
Query 2454 CTCAACAAGAGTTCTTGGAACACAACAGGTCGATGCTCACATTTACCGGTGGAGATGGGA 2513
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1953 CTCAACAAGAGTTCTTGGAACACAGCAGGTCGATGCACATATTTACCGGTGGAGATGGGA 2012
Query 2514 CACCAAGATAGTGATTTCAGATGTTGATGGAACTATAACTAAATCTGATGTGTTAGGTCA 2573
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 CACCAAGATAGTGATCTCAGATGTTGATGGAACTATAACTAAATCTGATGTGTTAGGTCA 2072
Query 2574 GTTCATGCCCTTCATTGGAAAGGACTGGACCCAATCCGGTGTAGCCAAGCTTTTTTCTGC 2633
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2073 GTTCATGCCCTTCATTGGAAAGGACTGGACACAATCCGGTGTAGCTAAGCTTTTTTCTGC 2132
Query 2634 CATAAAGGAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATA 2693
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2133 CATAAAGGAGAATGGATATCAGTTGCTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATA 2192
Query 2694 TCTAACAAGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC 2753
|||||| |||| ||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 2193 TCTAACGAGAAGTTTCTTAAATAATCTGAAGCAAGACGGAAAAGCTCTGCCAAATGGCCC 2252
Query 2754 TGTGGTCATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAGTGATAAGAAGAGC 2813
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 TGTGGTCATTTCTCCAGATGGCCTATTTCCAGCATTGTACCGTGAAGTGATAAGAAGAGC 2312
Query 2814 ACCTCATGAGTTCAAGATCGCATGTTTGGAGGATATCAGGAAACTCTTCCCAACGGATTA 2873
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2313 ACCTCATGAATTCAAGATCGCATGTTTGGAGGATATCAGGAAACTTTTCCCAACAGATTA 2372
Query 2874 CAACCCGTTCTATGCCGGATTTGGAAATAGAGACACAGATGAGCTGAGTTACAGAAAACT 2933
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2373 CAACCCGTTCTACGCTGGATTTGGAAACAGAGACACAGATGAGCTGAGTTACAGAAAACT 2432
Query 2934 CGGAATCCCAAAGGGAAAGATATTCATAATCAACCCAAAGGGAGAAGTGGCAACAGGACA 2993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2433 CGGAATCCCAAAGGGAAAGATATTCATAATCAACCCAAAGGGAGAAGTGGCAACAGGACA 2492
Query 2994 TCGCATAGATGTCAAGAAATCTTACACTTCACTTCATACTCTTGTCAACGACATGTTTCC 3053
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2493 TCGCATAGATGTCAAGAAGTCTTACACTTCACTTCATACTCTTGTCAACGACATGTTTCC 2552
Query 3054 TCCAACTTCACTTGTTGAGCAGGAAGATTATAACCCATGGAATTTCTGGAAACTGCCAAT 3113
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2553 TCCAACTTCACTTGTTGAGCAGGAAGATTATAACCCATGGAACTTCTGGAAACTACCAAT 2612
Query 3114 AGAAGAGGTTGAATGA 3129
|||||||||||| |||
Sbjct 2613 AGAAGAGGTTGATTGA 2628
Score = 1694 bits (917), Expect = 0.0
Identities = 1126/1221 (92%), Gaps = 37/1221 (3%)
Strand=Plus/Plus
Query 420 TTTGGTTGGAAGAGTTGGGAGTTTGATTTCTCAAGGGGTTTACTCTGTAGCGACACCATT 479
|||||||| ||||||||||| ||||||||||||||| ||||||||||| || ||||||||
Sbjct 9 TTTGGTTGCAAGAGTTGGGAATTTGATTTCTCAAGGCGTTTACTCTGTCGCTACACCATT 68
Query 480 TCATCCCTTTGGTGGTGCTATTGATGTCATCGTTGTTCAACAACAAGATGGTTCTTTCCG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TCATCCATTTGGTGGTGCTATTGATGTCATCGTTGTTCAACAACAAGATGGTTCTTTCCG 128
Query 540 TAGCACGCCTTGGTATGTTAGGTTTGGTAAGTTCCAAGGTGTTCTCAAAGGCGCTGAGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TAGCACGCCTTGGTATGTTAGGTTTGGTAAGTTCCAAGGTGTTCTCAAAGGCGCTGAGAA 188
Query 600 GTTTGTCAGGATTTCTGTTAATGGAACCGAAGCTGATTTTCACATGTATCTTGATAATTC 659
|||||||| ||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 189 GTTTGTCAAGATATCTGTAAATGGTACCGAAGCCGATTTCCACATGTATCTTGATAATTC 248
Query 660 TGGTGAAGCATATTTCATCAGGGAAGTTGATCCTGC-AGCTAATGACACCAACAATTTGA 718
|||||||||||| ||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 249 TGGTGAAGCATACTTCATCAGGGAAGTTGATCCTGCTA-ATAATGACACCAACAGTTTGA 307
Query 719 TTTCCGGGTCTGAGAATAACAATGGTAATCAGAATAACGGTGTTACTTATCGACTTGAGC 778
||||||||||||||||||||||||||||| | | || | ||||||||||||||
Sbjct 308 TTTCCGGGTCTGAGAATAACAATGGTAAT--G--T---GG-G----TTATCGACTTGAGC 355
Query 779 ACAGTTTATCGGACTCTGGTACTGGAGAATTACGAGAGGGTTTCGACCCTTTGAGTCGGC 838
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||
Sbjct 356 ACAGTTTATCGGACTCTGGTGCTGGAGAATTACGAGAGGGTTTCGAATCTTTGAATCGGC 415
Query 839 TTGAGAGGACAGAGTCTGATTGTAATAGGAGGTTTTATGATTTTCAGGATGATCCTCCTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTGAGAGGACAGAGTCTGATTGTAATAGGAGGTTTTATGATTTTCAGGATGATCCTCCTT 475
Query 899 CGCCAACCTCAGAATATGGAAGTGCTCGATTTGACAATCTAAATGTGGAAAGTTATGGGG 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTCCAACCTCAGAATATGGAAGTGCTCGATTTGACAATCTAAATGTGGAAAGTTATGGGG 535
Query 959 ATTCTCAAGGCTCAGATTCTGAAGTGGTTTTGGTCAGTATTGATGGACATATACTAACAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATTCTCAAGGCTCAGATTCTGAAGTGGTTTTGGTCAGTATTGATGGACATATACTAACAG 595
Query 1019 CCCCTGTGTCAGTTGCTGAGCAGGAGGCTGAGAATTTACGGTTAAATACTCCTCAGTTTC 1078
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTCCTGTGTCAGCGGCAGAGCAGGAGGCTGAGAATTTACGGTTAAATACTCCTCAGTTTC 655
Query 1079 ATTTGGCCCCTGGTGATGGGACTGAGTTTTGTGAAGGTAATACTGAGTTTGCTTCATCAG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 ATTTGGCCCCTGGTGATGGGACTGAGTTTTGTGAAGGTAATACTGAGTTTGCTTCGTCAG 715
Query 1139 AGACTCCGTGGGATACTGAATATATCGACAAAGTGGAGGAGTCATCTGATACTGCTAATA 1198
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 AGACTCCGTGGGATACTGAATATATCGCCAAAGTGGAGGAGTCATCTGATACTGCTAATA 775
Query 1199 TTGCATCTGATAAAGTAGATGCCATTAATGATGAGCGTAATGATTTGGATTCCCATTCTC 1258
||| |||||| ||| ||||| ||| ||||||||||||| |||||| |||||||||
Sbjct 776 TTGTATCTGAAAAATTAGATACCACGAATGATGAGCGTATTGATTTAGATTCCCAT---- 831
Query 1259 GTGATAATGCCGAAAAAGATTCTCATGATGCTGAAAGAGATCTTCTTGGGAGCTGTCTGG 1318
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 G--ATAATGCCGAAAAATATTCTCATGATGCTGAAAGAGATCTTCTTGGGAGCTGTCTGG 889
Query 1319 AGCAGTCAGAGCTGACCAAAACTAGTGAGAATGTGAAGTCTGAGGAACCAGGTCCTACTT 1378
||||||||||| || | ||||||||| ||||| | |||||||||| ||||||
Sbjct 890 AGCAGTCAGAG---AC------TGGTGAGAATGCCAAGTCCGGGGAACCAGGTTCTACTT 940
Query 1379 TTGAGGATCGGAATCTAAAAGAAGGTGAGTTTCCACTTCGCACCATTATGGAAAATGATA 1438
||||||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct 941 TTGAGGATCAGAATCTAAAAGAAGGTGAGTTTCCACTTAGCACCATCACGGAAAATGATA 1000
Query 1439 GAAGTGAAGATGAAGTTACTATTGAATCAATAGATACTCTTGTTGATAGTTTTGAATCTT 1498
|||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1001 GAAGTGAAGATGAAGTGACTATTGAAACAGTAGATACTCTTGTTGATAGTTTTGAACCTT 1060
Query 1499 CTACAACCCAAATAACAATAGAAGAAGTGAAAACAACCGAAGGA-TCCAGAATATCCGTT 1557
||||||||| | ||||| ||||||| |||||||||| || ||| |||||||||||||||
Sbjct 1061 CTACAACCCCAGTAACAGCAGAAGAAATGAAAACAACTGA-GGAATCCAGAATATCCGTT 1119
Query 1558 GATTCTAATGCTGATTCAGAATGTAAGGATGAACA---AA---CATCTGCAGAAACTGCC 1611
||||||| |||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1120 GATTCTATTGCTGAATCAGAATGTAAGGATGAACAGCCAAGAACATCTGCAGAAACTGCC 1179
Query 1612 ATCTTGTTTAACAACCAGGAA 1632
|||||| ||||||||||||||
Sbjct 1180 ATCTTGATTAACAACCAGGAA 1200
Score = 270 bits (146), Expect = 4e-71
Identities = 169/180 (94%), Gaps = 1/180 (1%)
Strand=Plus/Plus
Query 1621 AACAAC-CAGGAATCCAGTATATCCGTTGATTCTAATGCTGATTCAGAATGTAAGGATGA 1679
|||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 1092 AACAACTGAGGAATCCAGAATATCCGTTGATTCTATTGCTGAATCAGAATGTAAGGATGA 1151
Query 1680 ACAGCCACGAATATCTGCAGAAACTGCCATCTTGATTAACAACCAGGAAGGTGGGATTAT 1739
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1152 ACAGCCAAGAACATCTGCAGAAACTGCCATCTTGATTAACAACCAGGAAGGCGGGATTAT 1211
Query 1740 AGAATCGGAAGACCAGGATTCTGAGAGAGTCTCTATAGATTCAACGAGGGAGGAAGTTGA 1799
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1212 AGAATTGGAAGATCAGGATTCTGAGAGAGTCTCTATAGATTCAACGAGGGAAGAAGTTGA 1271
> Ahg950084 jgi|Araly1|950084|scaffold_801971.1
Length=247
Score = 255 bits (138), Expect = 1e-66
Identities = 154/162 (95%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 2639 AGGAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATATCTAA 2698
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGAATGGATATCAGTTGCTGTTTCAGAGCGCTCGTGCCATCGTTCAGGCATATCTAA 120
Query 2699 CAAGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCCTGTGG 2758
| |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 121 CGAGAAGTTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAAATGGCCCTGTGG 180
Query 2759 TCATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG 2800
||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG 222
> Ahg922470 jgi|Araly1|922470|scaffold_103751.1
Length=247
Score = 244 bits (132), Expect = 3e-63
Identities = 153/163 (94%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 2639 AGGAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATATCTAA 2698
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGAATGGATATCAGTTGCTGTTTCTGAGCGCTCGTGCCATCGTTCAGGCATATCTAA 120
Query 2699 CAAGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC-TGTG 2757
| |||| |||||||||||||||||||||||||||||||||||| |||| || || ||||
Sbjct 121 CGAGAAGTTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTACCAAATGG-CCATGTG 179
Query 2758 GTCATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG 2800
||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 GTCATTTCACCAGATGGCCTATTTCTAGCATTGTACCGTGAAG 222
> Ahg943019 jgi|Araly1|943019|scaffold_603563.1
Length=247
Score = 241 bits (130), Expect = 3e-62
Identities = 151/161 (94%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 2641 GAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATATCTAACA 2700
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 63 GAGAATGGATATCAGTTGCTGTTTCTGAGCGCTCGTGCCATCGTTCAGGCATATCTAACG 122
Query 2701 AGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC-TGTGGT 2759
|||| |||||||||||||||||||||||||||||||||||| |||| || || ||||||
Sbjct 123 AGAAGTTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTACCAAATGG-CCATGTGGT 181
Query 2760 CATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG 2800
||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 CATTTCACCAGATGGCCTATTTCTAGCATTGTACCGTGAAG 222
> Ahg933778 jgi|Araly1|933778|scaffold_401766.1
Length=247
Score = 241 bits (130), Expect = 3e-62
Identities = 151/161 (94%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 2641 GAGAATGGATATCAGTTACTGTTTTTGAGCGCTCGTGCCATCGTTCAGGCATATCTAACA 2700
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 63 GAGAATGGATATCAGTTGCTGTTTCTGAGCGCTCGTGCCATCGTTCAGGCATATCTAACG 122
Query 2701 AGAAATTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTGCCAACCGGTCC-TGTGGT 2759
|||| |||||||||||||||||||||||||||||||||||| |||| || || ||||||
Sbjct 123 AGAAGTTTCTTAAATAATCTGAAGCAGGACGGAAAAGCTCTACCAAATGG-CCATGTGGT 181
Query 2760 CATTTCACCAGATGGCCTATTTCCAGCATTGTACCGTGAAG 2800
||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 CATTTCACCAGATGGCCTATTTCTAGCATTGTACCGTGAAG 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130841935974
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5