BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09570.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478277 jgi|Araly1|478277|fgenesh2_kg.3__978__AT3G09570.1 2241 0.0
Ahg488733 jgi|Araly1|488733|fgenesh2_kg.6__1867__AT5G18520.1 754 0.0
Ahg951681 jgi|Araly1|951681|scaffold_106900001.1 745 0.0
> Ahg478277 jgi|Araly1|478277|fgenesh2_kg.3__978__AT3G09570.1
Length=1521
Score = 2241 bits (1213), Expect = 0.0
Identities = 1348/1414 (95%), Gaps = 6/1414 (0%)
Strand=Plus/Plus
Query 49 GTTTCTCACCTCTACAGTTACGGCGCGAATATGACGAGACTACCCCTCTTCGTCGTCCTC 108
|||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2 GTTTCTCAACTCTACTGTTACGGCATGAAAATGACGAGACTACCCCTCTTCGTCGTCCTC 61
Query 109 CTCCTCTTCTCCGCAAGTTGCATCACTCGC-ACGGCGGCGGAGATCAAATCTCTCACAAT 167
|| |||||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||
Sbjct 62 CTACTCTTCACCGCAAGTTTCATCACTC-CTACGGCGGCGGAGATCAAGTCTCTCACAAT 120
Query 168 CTCCGACGATTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGCCA 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TTCCGACGATTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGTCA 180
Query 228 TGTTAGCGTCTCTATTTCCTCTGTAGCAGTAGTATCTTCTTCGTCTGATCCGATCCCGGA 287
||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct 181 TGTTAGCGTCTCTGTTTCCTCTGTATCAGTAGTATCTTCTTCGTCTGTTCCGATCCCAGA 240
Query 288 TCCATCGAGGTTAGGGTTCTTCCTTATGTCAGAGGAATCGCTTCTCCAGGTAGTCTTAGA 347
||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TCCGTCGAGGCTAGGGTTCTTCCTTATGTCCGAGGAATCGCTTCTCCAGGTAGTCTTAGA 300
Query 348 GATCGAGCAAAACCCCAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCAC 407
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATCGAGCAAAACCCTAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCAC 360
Query 408 ATTTCACGATCTCTCTCCTCCCCCTGGTTCCAAATACGAGCACTTGTATCCGGTGATGTC 467
||| | ||||||||| |||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 361 ATTAAAAGATCTCTCTTCTCCTCCTGGTTCCAAATACGAGCACTTGTACCCGGTGATTTC 420
Query 468 TCCGAACGAATACTCTCTCTTCTTCGTGAATTGCGTACCGGAAACCAAAATTTCGATGAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCCGAACGAATACTCTCTCTTCTTCGTGAATTGCGTACCGGAAACCAAAATTTCGATGAA 480
Query 528 GGTTCGAACGGAGATGTACAATTTAGATCCGAACGGGTCTAAGGATTACCTTCCTGCCGG 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GGTTCGAACGGAGATGTACAATTTAGATCCGAACGGGTCTAAGGATTACCTCCCTGCCGG 540
Query 588 GTCAACCCGATTACCCGGATTGTATTTCTTCTTCTCCCTCGGTTACTTAGCTTTCCTTGG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCAACCCGATTACCCGGATTGTATTTCTTCTTCTCCCTCGGTTACTTAGCTTTCCTTGG 600
Query 648 TCTCTGGGGATATGCTTGTTGGGTCAATAAACGTGTTGTTCATAGGATCCATGTTCTTAT 707
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 601 TCTCTGGGGCTATGCTTGTTGGGTCAATAAACGGGTTGTTCATAGGATCCACGTTCTCAT 660
Query 708 GGCGGCTCTGCTT-TTAATGAAGGCTTTGAATCTGATCTGCGCCGCCGAGGATAAGCATT 766
||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 661 GGCGGCTCTGCTTCTTA-TGAAGGCTTTGAATCTGATCTGTGCCGCCGAGGATAAGCACT 719
Query 767 ACGTGAAAGTCACCGGTACTCCTCATGGCTGGGATGTTTTATTCTACATTTTCCAGTTTA 826
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 720 ACGTGAAAGTCACCGGTACTCCTCACGGCTGGGATGTCTTATTCTACATTTTCCAGTTTA 779
Query 827 TTCGTGTTGTTCTTCTCTTCACTGTGATTGTGTTGATTGGAACTGGCTGGTCCTTCTTGA 886
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 780 TTCGTGTTGTTCTTCTCTTCACTGTCATTGTGTTGATTGGAACTGGTTGGTCCTTCTTGA 839
Query 887 AGCCATTCTTACAAGAGAAAGAGAAGAATGTGTTGATGGTTGTTGTTCCACTTCAGGTTC 946
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 840 AGCCGTTTTTACAAGAGAAAGAGAAGAATGTGTTGATGGTTGTTGTCCCACTTCAGGTTC 899
Query 947 TCGCTAACATTGCTTCCATTGTGATTGGAGAGACTGGACCTTTTATCAAAGATTGGGTTA 1006
|||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 900 TCGCCAACATTGCTTCCGTTGTGATTGGAGAGACTGGACCTTTTATTAAAGACTGGGTTA 959
Query 1007 CTTGGAATCAGATATTCTTGCTTGTAGATATAGTTTGCTGTTGTGCGATCTTATTCCCTA 1066
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 960 CTTGGAATCAGATATTCTTGCTTGTAGATATAGTTTGTTGTTGTGCAATCTTATTTCCTA 1019
Query 1067 TTGTTTGGTCGATACGTTCGCTAAGAGAGACTTCGAAAACCGATGGGAAAGCGGCTAGGA 1126
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 TTGTTTGGTCGATTCGTTCGCTAAGAGAGACTTCAAAAACCGATGGGAAAGCGGCTAGGA 1079
Query 1127 ACTTGGCGAAATTGACTCTGTTTAGACAATTCTACATTGTTGTCATCGGGTATTTGTACT 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACTTGGCGAAATTGACTCTGTTTAGACAATTCTACATTGTTGTCATCGGGTATTTGTACT 1139
Query 1187 TTACGAGGATTGTAGTGTTTGCGCTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGA 1246
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTACGAGGATTGTAGTGTTTGCACTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGA 1199
Query 1247 GCAATGCAGCTGAGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTTCTATATGTTCA 1306
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTAATGCAGCTGAGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTTCTATATGTTCA 1259
Query 1307 GGCCTGTCGAGAAGAATGAGTATTTCGTTATAGATGAAGAAGAAGAAGAAGCCGCCGAGC 1366
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1260 GGCCGGTCGAGAAGAATGAGTATTTCGTTTTAGATGAAGAAGAAGAAGAAGCCGCAGAGC 1319
Query 1367 TGGCCTTGAAGGAGGATGATTTTGAACTCTGAAGCAGATCAAGGAATTTCA-TCGACTGT 1425
||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||
Sbjct 1320 TGGCCTTGAAGGAGGATGATTTTGAACTCTGAAACAGATCAAGGACTTTCACT-GACTGT 1378
Query 1426 ATAAGCTGTGAGGACATCTGctttttcttatctt 1459
||||||||||| ||||| |||||||| || ||||
Sbjct 1379 ATAAGCTGTGATGACATTTGCTTTTTGTTTTCTT 1412
Score = 171 bits (92), Expect = 2e-41
Identities = 104/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 1494 TGTAGTTTACTTGCAAAAGGGATTAACTGTGTATTTTTCTCTTATATCATAAAAGCTGGT 1553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1412 TGTAGTTTACTTGCAAAAGGGATTAACTGTGTATTTTTCTCTTATATCGTAAAAGCTTGT 1471
Query 1554 TTGTCCTAAGACTAATCTGCTAGTAAGAAGAGGATCAGAGCCTCTGCTGT 1603
||||||||||||| || |||||||||||||| |||||| |||||||||||
Sbjct 1472 TTGTCCTAAGACTTATTTGCTAGTAAGAAGAAGATCAGTGCCTCTGCTGT 1521
> Ahg488733 jgi|Araly1|488733|fgenesh2_kg.6__1867__AT5G18520.1
Length=1592
Score = 754 bits (408), Expect = 0.0
Identities = 973/1241 (78%), Gaps = 57/1241 (5%)
Strand=Plus/Plus
Query 144 GGCGGAGATCAAATCTCTC-ACAATCTCCGACGATTCTAGGCCGATGATTCTCTTCGA-A 201
||||||||||||||| ||| | ||||| ||||| || | |||||||| |||||||| |
Sbjct 121 GGCGGAGATCAAATCCCTCGTC-ATCTCGGACGACGCTCGTCCGATGATCCTCTTCGAGA 179
Query 202 AAGTTCGGATTCACTCAGTCCGGCCATGTTAGCGTCTCTATTTCCTCTGTAGCAGTAGTA 261
|| ||||||||||| || ||||||| || | |||||| || ||||| || | || ||
Sbjct 180 AA-TTCGGATTCACACACACCGGCCACGTCACCGTCTCAATCTCCTCCGTCTCCGTCGTC 238
Query 262 TCTTCTT-CGTCTGATCC-GATCCCGGATCCATCGAGGT-TAGGGTTCTTCCTTATGTCA 318
|| ||| || | ||||| || || || ||||| || | || |||||||| | ||
Sbjct 239 TCCACTTCCG-CAGATCCAAAT-CCAGAAGCATCG-CGTCTCGGATTCTTCCTCCTCTCC 295
Query 319 GAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCAAAACCCCA-ACTTCTGTGTACT 377
|| ||||| ||||||||||| || | |||||| | || ||||| | | ||||| || ||
Sbjct 296 GAAGAATCTCTTCTCCAGGTCCTCCTCGAGATCCAACAGAACCCTAGA-TTCTGCGTTCT 354
Query 378 CGATTC-CAATTACGTC-CTCCATCTCTTCACATTTCA-CGATCTCTCTCCTCCCCCTGG 434
||||| | | |||||| || |||||||||||| |||| ||||| |||||||| ||
Sbjct 355 AGATTCGC-ACTACGTCACT-CATCTCTTCACA-TTCAGAGATCTATCTCCTCCGCCAAA 411
Query 435 TTCCAAATACGAGCACT-TGTATCCGGTGA-TGTCTCCGAACGAATACTCTCTCTTCTTC 492
|||| || | | || | | || || || | | || || |||||||||||||||||||||
Sbjct 412 CTCCAGATTCAACCAATCT-TACCCAGTCACT-TCCCCAAACGAATACTCTCTCTTCTTC 469
Query 493 GTGAATTGCGTACCGGAAACCAAAATTTCGATGAAGGTTCGAACGGAGATGTACAATTTA 552
| ||||||||| || ||||||||| |||| ||| |||||| || |||||||| || |
Sbjct 470 GCGAATTGCGTCCCTGAAACCAAAGTTTCCATGGCGGTTCGCACAGAGATGTATAACAAA 529
Query 553 GATCCGAACGGGTCTAAGGATTACCTTCCTGCCGGGTCAACCCGATTACCCGGA-T-TGT 610
||||| ||||| ||||| || || || || || || || || | ||| || | | | |
Sbjct 530 GATCCAAACGGATCTAAAGACTATCTACCAGCTGGATCTACTCAATT-GCC-AACTCTCT 587
Query 611 ATTTCTTCTTCTCCCTCGGTTAC-TTAGCTTTCCTTGGTCTCTGGGGATATGCTTGTTGG 669
| | |||||||| |||| | ||| || |||||||| ||| ||||| | || |||| |||
Sbjct 588 ACTCCTTCTTCTTCCTCTGCTACGTT-GCTTTCCTCGGTTTCTGGAGCTACACTTGCTGG 646
Query 670 GTCAATAAACGTGTTGTTCATAGGATCCATGTTCTTATGGC-GGCTCTGCTT-TTAATGA 727
||| |||| |||||| |||||||| |||| ||||| || |||||| || || |
Sbjct 647 ACCAACAAACAAACCGTTCATCGGATCCATCTTCTCATGGCAGG-GCTGCTTCTT-ATCA 704
Query 728 AGGCTTTGAATCTGATCTGCGCCGCCGAGGATAAGCATTACGTGAAAG-TCACCGGTACT 786
| | ||||||||||| || || || || ||||| ||||||||| ||| |||| || ||
Sbjct 705 AATCGTTGAATCTGATTTGTGCAGCTGAAGATAAACATTACGTG-AAGATCACTGGAACG 763
Query 787 CCTCATGGCTGGGATGTTTTATTCTACATTTTCCAGTTTATTCGTGTTGTTCTTCTCTTC 846
||||||||||||||| || | |||||||| ||||| || || ||||||||||||||||||
Sbjct 764 CCTCATGGCTGGGATATTCTCTTCTACATCTTCCAATTCATCCGTGTTGTTCTTCTCTTC 823
Query 847 ACTGTGATTGTGTTGATTGGAACTGGCTGGTCCTTCTTGAAGCCATTCTTACAAGAGAAA 906
|| ||||| | ||||| |||||||||||||| || ||||| || ||||| || ||||||
Sbjct 824 ACCGTGATCATCTTGATCGGAACTGGCTGGTCGTTTTTGAAACCTTTCTTGCAGGAGAAA 883
Query 907 GAGAAGAATGTGTTGATGGTTGTTG-TTCCACTTCAGGT-TCTCGCTAACATTGCTTCCA 964
||||||||||||||||| ||| || | ||||||||||| | | || |||||||||||||
Sbjct 884 GAGAAGAATGTGTTGATCATTG-TGATCCCACTTCAGGTAT-TAGCCAACATTGCTTCCA 941
Query 965 TTGTGATTGGAGAGACTGGACCTTTTATCAAAGATTGGGTTACTTGGAATCA-GATATTC 1023
|||| ||||| || ||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 942 TTGTCATTGGTGAAACTGGACCTTTTATCAAAGATTGGGTTACTTGGAACCAAG-TGTTT 1000
Query 1024 TTGCTTGTAGATAT-AGTTTGCTGTTGTGCGATCT-TATTCCCTATTGTTTGGTCGATAC 1081
|||||||| ||||| | | || || ||||| || | | ||||| ||||| ||||| || |
Sbjct 1001 TTGCTTGTGGATATCA-TCTGTTGCTGTGCTAT-TATCTTCCCCATTGTCTGGTCTATTC 1058
Query 1082 GTTCGCTA-AGAGAGACTTCGAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTG 1140
| || || |||||||| |||||||||||||| ||||| || ||||||||| |||| |
Sbjct 1059 GATC-CTTGAGAGAGACCTCGAAAACCGATGGTAAAGCTGCGAGGAACTTGTCGAAGCTC 1117
Query 1141 AC-TCTGTTTAGACAATTCTACATTGTTGTCATCGGGTAT-TTGTACTTTACGAGGATTG 1198
|| | |||||||||| |||||||||||||||||||| ||| || ||||| ||||| || |
Sbjct 1118 ACGT-TGTTTAGACAGTTCTACATTGTTGTCATCGGATATCTT-TACTTCACGAGAATCG 1175
Query 1199 TAGTGTTTGCGCTGAAGACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTG 1258
| ||||||||||| || || || || ||||||||||| | ||||||||| |||||| |
Sbjct 1176 TGGTGTTTGCGCTTAAAACCATTGCGGCTTATAAGTACCAGTGGGTGAGTTTTGCAGCGG 1235
Query 1259 AGGAGATTGCAAGTCTGGCGTTTTACATGTTGATGTT-CTATATGTTCAGGCCTGTCGAG 1317
||||||||| ||| ||| ||| || || | ||||| | ||||||| ||||||| |||
Sbjct 1236 AGGAGATTGTGAGTTTGGTGTTCTATGTGATCATGTTTC-ATATGTTTAGGCCTGAGGAG 1294
Query 1318 AAGAATGAGTA-TTT-C-GTT-ATAGATGAAGAAGAAGAAG 1354
||||||||||| ||| | ||| || ||||| ||||||||||
Sbjct 1295 AAGAATGAGTACTTTGCTGTTGAT-GATGATGAAGAAGAAG 1334
> Ahg951681 jgi|Araly1|951681|scaffold_106900001.1
Length=930
Score = 745 bits (403), Expect = 0.0
Identities = 429/442 (97%), Gaps = 0/442 (0%)
Strand=Plus/Plus
Query 976 GAGACTGGACCTTTTATCAAAGATTGGGTTACTTGGAATCAGATATTCTTGCTTGTAGAT 1035
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 487 GAGACTGGACCTTTTATTAAAGACTGGTTTACTTGGAATCAGATATTCTTGCTTGTAGAT 546
Query 1036 ATAGTTTGCTGTTGTGCGATCTTATTCCCTATTGTTTGGTCGATACGTTCGCTAAGAGAG 1095
|||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 547 ATAGTTTGTTGTTGTGCAATCTTATTTCCTATTGTTTGGTCGATTCGTTCGCTAAGAGAG 606
Query 1096 ACTTCGAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTGACTCTGTTTAGACAA 1155
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 ACTTCAAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTGACTCTGTTTAGACAA 666
Query 1156 TTCTACATTGTTGTCATCGGGTATTTGTACTTTACGAGGATTGTAGTGTTTGCGCTGAAG 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTCTACATTGTTGTCATCGGGTATTTGTACTTTACGAGGATTGTAGTGTTTGCGCTGAAG 726
Query 1216 ACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTGAGGAGATTGCAAGTCTG 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTGAGGAGATTGCAAGTCTG 786
Query 1276 GCGTTTTACATGTTGATGTTCTATATGTTCAGGCCTGTCGAGAAGAATGAGTATTTCGTT 1335
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 787 GCGTTTTACATGTTGATGTTCTATATGTTCAGGCCGGTCGAGAAGAATGAGTATTTCGTT 846
Query 1336 ATAGATGAAGAAGAAGAAGAAGCCGCCGAGCTGGCCTTGAAGGAGGATGATTTTGAACTC 1395
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 847 TTAGATGAAGAAGAAGAAGAAGCCGCAGAGCTGGCCTTGAAGGAGGATGATTTTGAACTC 906
Query 1396 TGAAGCAGATCAAGGAATTTCA 1417
|||| ||||||||||| |||||
Sbjct 907 TGAAACAGATCAAGGACTTTCA 928
Score = 721 bits (390), Expect = 0.0
Identities = 457/489 (93%), Gaps = 5/489 (1%)
Strand=Plus/Plus
Query 58 CTCTACAGTTACGGCGCGAATATGACGAGACTACCCCTCTTCGTCGTCCTCCTCCTCTTC 117
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 CTCTACTGTTACGGCATGAAAATGACGAGACTACCCCTCTTCGTCGTCCTCCTACTCTTC 60
Query 118 TCCGCAAGTTGCATCACTCGC-ACGGCGGCGGAGATCAAATCTCTCACAATCTCCGACGA 176
||||||||| |||||||| | ||||||||||||||||| ||||||||||| ||||||||
Sbjct 61 ACCGCAAGTTTCATCACTC-CTACGGCGGCGGAGATCAAGTCTCTCACAATTTCCGACGA 119
Query 177 TTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGCCATGTTAGCGT 236
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGTCATGTTAGCGT 179
Query 237 CTCTATTTCCTCTGTAGCAGTAGTATCTTCTTCGTCTGATCCGATCCCGGATCCATCGAG 296
|||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 180 CTCTGTTTCCTCTGTATCAGTAGTATCTTCTTCGTCTGTTCCGATCCCAGATCCGTCGAG 239
Query 297 GTTAGGGTTCTTCCTTATGTCAGAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCA 356
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTAGGGTTCTTCCTTATGTCCGAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCA 299
Query 357 AAACCCCAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCACATTTCACGA 416
||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 300 AAAGCCTAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCACATTAAAAGA 359
Query 417 TCTCTCTCCTCCCCCTGGTTCC-AAATACGAGCACTTGTATCCGGTGATGTCTCCGAACG 475
||||||| |||| ||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 360 TCTCTCTTCTCCTCCTGGTTCCCAAATACGAGCACTTGTACCCGGTGATTTCTCCGAACG 419
Query 476 AATACTCTCTCTTCTTCGTGAATTGCGT-ACCGGAAACCAAAATTTCGATGAAGGTTCGA 534
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 420 AATACTCTCTCTTCTTCGTGAATTGCGTTAC-GGAAACCAAAATTTCGATGAAGGTTCGA 478
Query 535 ACGGAGATG 543
||||||||
Sbjct 479 CCGGAGATG 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5