BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09580.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478278 jgi|Araly1|478278|fgenesh2_kg.3__979__AT3G09580.1 2394 0.0
> Ahg478278 jgi|Araly1|478278|fgenesh2_kg.3__979__AT3G09580.1
Length=1576
Score = 2394 bits (1296), Expect = 0.0
Identities = 1485/1578 (94%), Gaps = 5/1578 (0%)
Strand=Plus/Plus
Query 1 GAATGAGAAAAACCTTATCCAAACTTTTAAAATG-C-CC-GTGGCGATCTCTCTCCCAAC 57
|||||||||||||||||||||||||||||||||| | || |||||| | |||||||||
Sbjct 1 GAATGAGAAAAACCTTATCCAAACTTTTAAAATGCCGCCATTGGCGAACACTCTCCCAAT 60
Query 58 CTCATCTACTTCTCATTTCTTCCCTCGCCGCCGCGGCCATGCAAATCACCGATATCAACG 117
|||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 CTCATCTATTTCTCAATTCTTCCCTCCCCGCCGCGGCCATGCAAATCACCGATATCGACG 120
Query 118 CTTTTCCGGAGCTCAATCTTCCACGGAAGATCCGTACATTCGGAAGAATCAAACTGGCGT 177
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 121 CTTTTCCGGAGCTCAATCTTCCACGGCAGACCCGTACAATCGGAAGAATCAAACTGGCGT 180
Query 178 CATCATCATCGGCGCTGGACTCGCTGGTTTAGCCGCCGCAAACCAGCTCACCTCCAAACG 237
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CATCATCATCGGCGCTGGACTCGCTGGTTTAGCCGCCGCGAACCAGCTCACCTCCAAACG 240
Query 238 AATCCCTTTCCTACTCCTCGAAGCTTCCGATGGCGTCGGCGGACGCGTCCGTACAGATAT 297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AATCCCTTTCCTACTCCTCGAAGCTTCCGACGGCGTCGGCGGACGCGTCCGTACAGATAT 300
Query 298 CGTCGACGGCTTCTTTCTCGACAGAGGATTTCAGATTTTCATCACCGCGTACCCCGAAGC 357
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 301 CGTCGACGGCTTCTTTCTGGACAGAGGATTTCAGATTTTCATCACTGCGTATCCCGAAGC 360
Query 358 TAAAAAGCTTCTAGATTATGAAGCACTGGATCTGCAGAGATTCTACGCCGGAGCTAAGGT 417
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TAAAAAGCTTCTAGATTACGAAGCACTGGATCTGCAGCGATTCTACGCCGGAGCTAAGGT 420
Query 418 GTTTTACGGCGGTAAATTTCACACCGTCGCTGATCCTCTCCGACATTTTTGGGATTCGGT 477
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TTTTTACGGCGGAAAATTTCACACCGTAGCTGATCCTCTCCGACATTTTTGGGATTCGGT 480
Query 478 GGCATCTCTCGCGAATCCGATCGGATCCGTCGTTGACAAAGGGCTTATCGCTTTGACGAG 537
|||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 481 GGCATCTCTCACGAATCCGATTGGATCCGTTGTGGACAAAGGGCTTATCGCTTTGACGAG 540
Query 538 AGCTAGGGTTCTAATCAAGTCAGACGAAGAGATATTGACTGCCGCCGATGAAGTTCCCAC 597
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 541 AGCTAGGGTTCTAATCAAGTCAGACGAAGAAATATTGACTGCTTCCGATGAAGTTCCGAC 600
Query 598 CATTGATCTCCTCCGTAAGATCGGTTTCTCCGAAACGATTCTTGATCGGTTCTTCCGACC 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CATTGATCTCCTCCGTAAGATCGGTTTCTCCGAAGCGATTCTTGATCGGTTCTTCCGACC 660
Query 658 ATTCTTCGGCGGAATTTTCTTCGACAGAGACCTCGAGACGACCTCGAAGCTCTTCGATTT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 ATTCTTCGGCGGAATTTTCTTCGACAGAGACCTCGAGACGACCTCGAAGCTCTTTGATTT 720
Query 718 CGTTTTCCGGTGTCTTGCTCTCGGAGAAAACACACTTCCAGCCATGGGAATCGGAGAAAT 777
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 CGTTTTCCGGTGTCTTGCTCTCGGAGAAAATACACTTCCAGCCATGGGAATCGGAGAAAT 780
Query 778 CTCGAACCAGTTGGCAGCGAAGTTACCCGCTAAGTCCGTCTTGTTGAACACAAGGGTCGC 837
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 781 CTCGAACCAGTTGGCCGCGAAATTACCAGCTAATTCCGTCTTGTTGAACACAAGGGTCGC 840
Query 838 TTCTATTGAGTATCCAAATGGATCGGGTTCGGATCCACCTAGCGTGAGGCTCCAAGACGG 897
||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 841 TTCGATTGAGTATCCAAATGGAACGGGTTCTGATCCACCTAGCGTGAGACTCCAAGACGG 900
Query 898 CAGCGTTATGAAGGCAGAGCTAGGTGTCATAATCGCCGTCGAGCAACCGGAAGTGAATAA 957
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 901 CGGCGTTTTGAAGGCAGAGCTAGGTGTCATAGTCGCCGTCGAGCAACCGGAAGTGGATAA 960
Query 958 GCTTCTCGATGGGATCAGAGACCCGGTTATAACAAAACCAGCTCGGAGCACTATTTGTCT 1017
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 961 GCTTCTCGATGGGATCAGAGACCCGGTTATGACAAAACCGGCTCGGAGCACCATTTGTCT 1020
Query 1018 TTACTTCACAGCTGAACCGAACCAAATACCGGTACAAGACCCGGTTCTATTTCTCAACGG 1077
||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1021 CTACTTTACAGCTGAACCAAACCAGATACCGGTACAAGACCCGGTTCTATGTCTCAACGG 1080
Query 1078 GTCAAATTCCGGTATAATCAACAACATGTTCTTCGCTACAAACGTTGCTCGGACATACGC 1137
| ||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 1081 GACAAATACCGGTATAATCAACAACTTGTTCTTTGCTACAAATGTTGCTCGGACATACGC 1140
Query 1138 GCCACCGGGAAAGGCTCTGGTTTCGGTATCATTGATCGGATTGTTTGAGGATAGAACCGA 1197
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 1141 GCCACCGGGAAAGGCTCTAGTTTCGGTATCATTGATCGGATCGTTCGAGGATAGATCCGA 1200
Query 1198 TGATGATTTAGCAGCAGAAGTTCTTAGAGAACTCTCTGGTTGGTTTGGTGAGTCTCCGGT 1257
|||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1201 TGATGACTTAGCAGCAGAGGTTATTAGAGAACTCTCTGGTTGGTTTGGTGAGTCTTCGGT 1260
Query 1258 TATGTCATGGAAACATTTGAAAACATACCGGATCCAATTCGCTCAGCCTAACCAATGTCC 1317
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1261 TATGTCATGGAAACATTTGAAAACGTACCGGATCCAATTCGCTCAGCCTAACCAATGCCC 1320
Query 1318 ACCCACTGATTTGGTCAAGAGTCCTCGGGTCGGGTCGGGTCTTTACTTGAGCGGTGATTA 1377
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ACCCACTGATTTGGTTAAGAGTCCTCGGGTCGGGTCGGGTCTTTACTTGAGCGGTGATTA 1380
Query 1378 CATGACTTCTGCTACATTTGATGGAGCTTTGGTCTCTGGGAGACGAGCCGTGGAAGTTTT 1437
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CATGACTTCTGCTACATTTGACGGAGCTTTGGTCTCTGGGAGACGAGCCGTGGAAGTTTT 1440
Query 1438 GCTACGAGAAACGGGACTAATCAAATAGAttttttttGTTATTTAAGATTCTTTGTATGG 1497
| ||||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| | |
Sbjct 1441 GTTACGAGAAAAGGGACTAATCTAATAGAAATTTTCTGTTATTCAAGACTCTTTGTGTAG 1500
Query 1498 CTTAATTCATGTCTTGTATGTAGAAGTATGTATCCTCTAAGATCATATGTTGGCAAATTA 1557
||| ||||||| ||||||| || ||||||||||||||||||||||| |||| ||||||
Sbjct 1501 CTTTATTCATGGCTTGTAT--AGTTGTATGTATCCTCTAAGATCATATATTGGAAAATTA 1558
Query 1558 AGCATTATGGTTAATGCT 1575
| ||| ||||||| ||||
Sbjct 1559 AACATCATGGTTATTGCT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5