BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09590.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928630 jgi|Araly1|928630|scaffold_301087.1 863 0.0
> Ahg928630 jgi|Araly1|928630|scaffold_301087.1
Length=613
Score = 863 bits (467), Expect = 0.0
Identities = 532/563 (94%), Gaps = 5/563 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTAACGTTGTCTCATCCATCATCATGtcttcttcttctcttccttctcttTTCC 60
|||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||||
Sbjct 21 ATGTCTGTAACGTTGTCTCATCCATCATCATGTCTTGTCCTTCTCCTCCTTCTATTTTCC 80
Query 61 GGTCATCCCTCCGTCCT-CGGAACCTCCATCCCCGACGCGGTGAACACGGCGGCGCGTTT 119
||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||| ||| |
Sbjct 81 GGTCATCCCTCCG-CCTCCGGGACCTCCATCCCCGACATGGTGAACACGGCGGCACGTGT 139
Query 120 GGTAAACAGAGCGAGAAGAGCAAAAC-TGTCGAGAGAATTTCTACAAGCGCACAACGATG 178
| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 140 GTTAAACAGAGCGAGAAGAGCAAAACTTG-CGAGAGAATTTCTACAAGCGCACAACGATG 198
Query 179 CACGTGTTTCTTCAGGCGTGCCAACGCTCGGATGGGACAGAGACCTGGCCCGATTCGCTG 238
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 199 CACGTGTTTCTTCAGGCGTGCCAACTCTCGAATGGGACAGAGACCTGGCCCGATTCGCTG 258
Query 239 ATAAATGGGCTAAACAACGTAAGTCCGATTGCAGTATGATACATTCAGGTGGGCCTTACG 298
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 259 ATAAATGGGCTAAACAACGTAAGCCCGATTGCAGCATGATACATTCAGGTGGGCCTTACG 318
Query 299 GTGAGAACATTTTCTGGCACCGGCGTAAGAAGACGTGGTCGCCGGAGAAAGTGGTGACGA 358
| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 319 GCGAGAACATTTTCTGGTACCGGCGTAAGAACATGTGGTCGCCGGAGAAAGTGGTGACGA 378
Query 359 GATGGTTTGAGGAAAGGTTTAACTACGACGTGAAAACAAACACGTGCGCACCGGGAAAGA 418
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 379 GATGGTATGAGGAAAGGTTTAACTACGACGTGAAAACAAACACGTGCGCATCGGGAAAGA 438
Query 419 TGTGCGGCCATTACACGCAGATGGTGTGGAGAGAGACCACAGCCGTTGGATGCGCACGTG 478
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 439 TGTGCGGCCATTACACGCAGATGGTGTGGAGAGCCACCACAGCCGTTGGATGCGCACGTG 498
Query 479 TGAAATGCCATAACGGTCGTGGCTATCTTGTGGTGTGTGAATATGATCCACGCGGGAATT 538
|||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 499 TGAAATGCAACAACGGTCGTGGCTATCTTGTGGTGTGTGAATATGACCCACGTGGGAATT 558
Query 539 ACGAAGGTGAAAGACCATTTTGA 561
|||||||||||||||| ||||||
Sbjct 559 ACGAAGGTGAAAGACC-TTTTGA 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5