BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09620.1
Length=2970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317764 jgi|Araly1|317764|fgenesh1_pm.C_scaffold_3000780 3022 0.0
Ahg472328 jgi|Araly1|472328|fgenesh2_kg.1__2282__AT1G20920.2 1855 0.0
Ahg341099 jgi|Araly1|341099|fgenesh1_pg.C_scaffold_3000862 433 4e-120
> Ahg317764 jgi|Araly1|317764|fgenesh1_pm.C_scaffold_3000780
Length=2793
Score = 3022 bits (1636), Expect = 0.0
Identities = 1963/2122 (93%), Gaps = 17/2122 (1%)
Strand=Plus/Plus
Query 856 GAAACTGGTGACCAAGCCAAAA--AAGGTTTTAATAAGGCCGCCCTTGGTAGGATAATTC 913
||||||||||||| || ||||| ||||||| ||||| | ||||||||||||||||||
Sbjct 682 GAAACTGGTGACC-AG-CAAAAGGAAGGTTTGAATAA-G--TCCCTTGGTAGGATAATTC 736
Query 914 AAGGTGAAGATTCTGATTCAGATTACTCAGAACCAAAGAGTGATGATGATCCAAGTTTAG 973
||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||
Sbjct 737 AAGGTGAAGATTCTGATTCTGATTATTCACAATCAAAGAGTGATGATGATCCAAGTTTAG 796
Query 974 ACGAAGACGACGAGGAGTTTATGAAGAGAGTTAAGAAGACAAAAGCAGAGAAATTGTCTC 1033
||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 797 ACGAAGATGATGAGGAGTTCATGAAGAGAGTGAAGAAGACAAAAGCAGAAAAATTGTCTC 856
Query 1034 TTGTTGACCACTCCAAAATAGAGTATGAACCTTTCCGGAAGAATTTTTATATCGAAGTCA 1093
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 857 TTGTTGACCACTCCAAAATAGAGTATGAACCTTTCCGGAAGAACTTCTATATCGAAGTCA 916
Query 1094 AGGATATCTCAAGGATGACACAGGATGCAGTGAACGCTTATAGAAAGGAATTGGAGCTGA 1153
||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 917 AGGATATCTCAAGAATGACACAGGATGTAGTTAACGCTTACAGAAAGGAATTGGAGCTGA 976
Query 1154 AAGTTCATGGGAAAGATGTTCCAAGACCCATTC-AATTTTGGCACCAGACTGGATTAACT 1212
||||||||||||||||||| |||||||||| || || |||||||||||||||| |||||
Sbjct 977 AAGTTCATGGGAAAGATGTACCAAGACCCA-TCAAAGCTTGGCACCAGACTGGACTAACT 1035
Query 1213 AGCAAAATTTTGGATACTCTGAAGAAGCTTAACTATGAAAAGCCAATGCCTATCCAAGCA 1272
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1036 AGCAAAATTTTGGATACTCTAAAGAAGCTTAACTATGTAAAGCCAATGCCTATCCAAGCA 1095
Query 1273 CAAGCACTTCCAATCATCATGAGCGGTAGAGACTGCATTGGGGTTGCCAAA-ACCGGGTC 1331
|||||||| |||||||||||||||||| |||||||||||||| ||| |||| ||||||||
Sbjct 1096 CAAGCACTCCCAATCATCATGAGCGGTCGAGACTGCATTGGGATTG-CAAACACCGGGTC 1154
Query 1332 AGGTAAAACCCTTGGCTTTGTTTTGCCTATGTTGAGGCATATCAAAGATCAGCCTCCCGT 1391
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1155 AGGTAAAACCCTTGCCTTTGTTTTGCCTATGTTGAGGCATATCAAAGATCAGCCTCCCAT 1214
Query 1392 TGAAGCTGGTGATGGGCCGATTGGGCTTGTAATGGCACCTACTAGAGAACTTGTTCAGCA 1451
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1215 TGAAGCTGGTGATGGGCCGATTGGGCTTGTAATGGCACCTACTAGGGAGCTTGTTCAGCA 1274
Query 1452 GATTTACAGCGATATCAGAAA-GTTTTCTAAGGCATTGGGTATAATATGTGT-GCCTGTG 1509
|||| |||||||||||| ||| |||| |||||||||||||| ||| |||||| | |||||
Sbjct 1275 GATTCACAGCGATATCA-AAAGGTTTGCTAAGGCATTGGGTGTAAGATGTGTAG-CTGTG 1332
Query 1510 TATGGAGGATCTGGAGTTGCCCAGCAAATCAGTGAGCTTAAGCGAGGTACCGAGATTGTT 1569
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1333 TATGGAGGATCAGGAGTTGCCCAGCAAATCAATGAGCTTAAGCGAGGTACTGAGATTGTT 1392
Query 1570 GTTTGTACTCCTGGAAGAATGATCGATATTCTTTGCACAAGCAGTGGAAAAATTACCAAT 1629
|| || |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1393 GTGTGCACTCCTGGCAGAATGATCGATGTTCTTTGCACAAGCAGTGGAAAAATCACCAAT 1452
Query 1630 CTACGAAGGGTCACATATTTGGTAATGGATGAAGCTGATCGTATGTTTGATATGGGTTTT 1689
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1453 CTGCGAAGGGTCACATATTTGGTAATGGATGAAGCTGATCGTATGTTTGACATGGGTTTT 1512
Query 1690 GAGCCTCAAATAACTCGCATTGTTCAAAATATTCGACCTGATCGTCAAACTGTGCTCTTT 1749
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GAGCCTCAAATAACTCGTATTGTTCAAAATATTCGACCTGATCGTCAAACTGTGCTCTTT 1572
Query 1750 TCTGCCACTTTTCCACGCCAAGTTGAAACTTTGGCACGTAAAGTCTTGAACAAGCCTGTG 1809
|||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||
Sbjct 1573 TCTGCCACTTTTCCACGCCAAGTTGAAACTTTGGCACGCAAAGTCGTGGACAAACCTGTG 1632
Query 1810 GAGATACAGGTCGGTGGGAGGAGTGTTGTGAATAAAGATATAACTCAGTTAGTTGAAATC 1869
|| ||||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1633 GAAATACAAGTTGGTGGAAGGAGTGTTGTGAATAAAGATATAATTCAGTTAGTTGAAATC 1692
Query 1870 AGACCCGAGAGTGAGAGGTTCTCAAGACTTCTGGAACTTCTTGGGGAATGGTATGAGAAA 1929
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1693 AGACCGGAGAGTGAGAGGTTCTCAAGACTTCTGGAACTTCTTGGGGAATGGTATGAAAAA 1752
Query 1930 GGAAAAGTTTTGGTCTTTGTTCGTTCGCAGGAAAAATCTATATCTGATTTTAAGAGCGAT 1989
|||||||||||||| ||| |||||||||||||||||||| ||||||| ||||||| | ||
Sbjct 1753 GGAAAAGTTTTGGTGTTTTTTCGTTCGCAGGAAAAATCTTTATCTGAATTTAAGAACAAT 1812
Query 1990 GTCTGCAATTTGTTGATCGCCACAAGTGTTGCAGCCAGGGGTCTAGATGTGAAAGAGCTC 2049
||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1813 GTCTGCAATTTGTTGATTGCAACAAGTGTTGCAGCGAGGGGTCTAGATGTGAAAGAGCTT 1872
Query 2050 GAGTTGGTTGTAAACTTCGATGCACCAAACCACTATGAAGACTATGTGCATCGTGTTGGT 2109
||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||||
Sbjct 1873 GAGTTGGTTGTAAACTTTGATCCGCCGAACCACTATGAAGACTATGTGCATCGTGTTGGC 1932
Query 2110 AGGACAGGTAGGGCAGGGCGGAAAGGCTGTGCTGTAACATTTATCTCTGAGGATGATGCA 2169
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1933 AGGACTGGTAGGGCAGGGCGGAAAGGCTGTGCTGTAACATTTATCTCCGAGGATGATGCA 1992
Query 2170 AAATATGCACCAGATTTAGTCAAGGCCCTGGAACTATCTGAGCAGCCAGTTCCTGATGAT 2229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 AAATATGCACCAGATTTAGTCAAGGCCCTGGAACTATCTGAGCAGCCAGTTCCTGATGAT 2052
Query 2230 GTTAAAGCAGTAGCCGAAGGGTTCATGGCGAAAGTAAAACAGGGTATTGAGCAAGCTCAT 2289
|| ||||||||||| || || ||||||||||||||||||||||||| |||||||||||||
Sbjct 2053 GTGAAAGCAGTAGCTGATGGATTCATGGCGAAAGTAAAACAGGGTACTGAGCAAGCTCAT 2112
Query 2290 GGAACTGGCTATGGTGGAAGTGGCTTTAAATTCAACGAAGAGGAGGATGAAGTTAGGAAA 2349
||||||||||||||||| |||||||||||||| |||||||| || || |||||||||||
Sbjct 2113 GGAACTGGCTATGGTGGTAGTGGCTTTAAATTTAACGAAGACGATGAAGAAGTTAGGAAG 2172
Query 2350 GCAGCAAAGAAAGCACAAGCGAAGGAGTATGGCTTTGAAGAAGAGAAGTCTGACTCAGAA 2409
||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2173 GCAGCAAAGAAAGTACAAGCGAAGGAGTATGGCTTTGAGGAAGAGGAGTCTGACTCAGAA 2232
Query 2410 GATGAGAATGATGTAGTAAGAAAGGCTGGTGGTGATATCTCACAGCAGCAGATTACTCTT 2469
||||||||||||||||||||||| ||||||| ||||||||||||||||||| | || ||
Sbjct 2233 GATGAGAATGATGTAGTAAGAAACGCTGGTGATGATATCTCACAGCAGCAGGCTCCTTTT 2292
Query 2470 GCTCAGATAGCCGCCATTGCTTCTGCTGCTTCTAAGGCTCCTGTGACTGCTAACCAATTG 2529
|||||||||||||||||| || ||||||||||||| || |||||||||||||||||||||
Sbjct 2293 GCTCAGATAGCCGCCATTTCTGCTGCTGCTTCTAACGCGCCTGTGACTGCTAACCAATTG 2352
Query 2530 CTTCCAAATGGTGGTGGGCTAGCCACTGAGCCAGGTATCCCTCCTACTGATGGAGCAGGC 2589
| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 2353 CCTCCAAACGGTGGTGGGCTAGCCACCGAGCCAGGTGTCCCTCCTACTGATGGATCAGGC 2412
Query 2590 CGCGTTGCAGCCATGATTGCTGCTGCTAACGTGCAACAGTACCTTGCAAAGATTCAAGCT 2649
||| ||||||| || ||||||| |||||| ||||||| |||||||||| ||||||||||
Sbjct 2413 CGCACTGCAGCCCTGGTTGCTGCCGCTAACTTGCAACATTACCTTGCAAGGATTCAAGCT 2472
Query 2650 GATGCGATACCTGAACACTATGAAGCAGAATTGGAAATCAATGATTTCCCACAGAATGCT 2709
|||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 2473 GATGCGATGCCTGAACACTATGAAGCAGAATTGGAAATCAATGATTTTCCACCGAATACT 2532
Query 2710 CGGTGGAAAGTTACCCACAAAGAAACGCTGGGACCAATATCAGAGTGGAGTGGAGCTTCC 2769
| ||||||||| |||| |||||||||||| || ||||||||||||||||||||||| ||
Sbjct 2533 CTGTGGAAAGTGACCCGCAAAGAAACGCTAGGTCCAATATCAGAGTGGAGTGGAGCCGCC 2592
Query 2770 ATTACCACTAGAGGTAAGTTTTATGAGGCAGGACGTATCCCGGGACCTGAGGAACGCAAG 2829
||||||||||||||||||| | ||| ||||||| |||||||||||||| |||||||||
Sbjct 2593 ATTACCACTAGAGGTAAGTGGTGTGATGCAGGACTTATCCCGGGACCTGGGGAACGCAAA 2652
Query 2830 CTCTATTTGTTCGTCGAAGGGCCTACCGAAATA-TCTGTTAAGACAGCGAAAGCTGAACT 2888
||||| |||||| | |||||||||||| ||| | |||||||||||||||||||| |||||
Sbjct 2653 CTCTACTTGTTCATTGAAGGGCCTACC-AAAGAATCTGTTAAGACAGCGAAAGCCGAACT 2711
Query 2889 CAAGCGTGTTCTTGAAGACATAACTAACCAAACCTTCTCCCTTCCTGGAGGAGCACAATC 2948
|||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||| |
Sbjct 2712 GAAGCGTGTTCTTGAAGACATAACTAATCAAGCCTTTTCCCTTCCTGGACGAGCACAACC 2771
Query 2949 AGGCAGATACTCTGTTTTATAA 2970
|||||||||||||| |||||
Sbjct 2772 TGGCAGATACTCTGTCCTATAA 2793
> Ahg472328 jgi|Araly1|472328|fgenesh2_kg.1__2282__AT1G20920.2
Length=4343
Score = 1855 bits (1004), Expect = 0.0
Identities = 1412/1599 (88%), Gaps = 67/1599 (4%)
Strand=Plus/Plus
Query 424 GAGAAGAAAACTCGGGATGAACAAGTAGAGGATGAGCAGAAGCAGTTGGCTGAGGAAGTA 483
||||||||||| || || ||| || | ||||||||||||||| |||||| |||||| ||
Sbjct 886 GAGAAGAAAACCCGAGAAGAAGAACTTGAGGATGAGCAGAAGAAGTTGGATGAGGAGGTG 945
Query 484 GAAAAACGGAGGAGAAGAGTCCAGGAGTGGCAAGAGTTGAAGAGGCAA-AACGAGGAAGC 542
|||||||| |||||||||||||||||||||||||| ||||||||| || || ||||||||
Sbjct 946 GAAAAACGAAGGAGAAGAGTCCAGGAGTGGCAAGAATTGAAGAGG-AAGAAGGAGGAAGC 1004
Query 543 TCAAATTGAAAGTAA-GG-G-T-C-----CT---GAG----A--CCGGTAAGGCTTGGAC 584
| ||| ||||||||| || | | | | ||| | ||||||||||||||||
Sbjct 1005 TGAAAGTGAAAGTAAGGGTGATGCGGATGGTAAAGAGCCCAAGGCCGGTAAGGCTTGGAC 1064
Query 585 TCTTGATGGTGAATCTGATGAT---GAAG----T--T------AAATCAGACTCAGAGAT 629
|||||| || |||||||||||| |||| | | |||||||| |||| ||
Sbjct 1065 TCTTGAAGGAGAATCTGATGATGAAGAAGTTCATCCTGAGGAAAAATCAGAAGCAGAAAT 1124
Query 630 GGATGTTGATCG-TGATACTAAA-CTCGAAAATGGTGGAGATGCCAAGATGGTCGCCTCG 687
|||||||||| | || |||||| || ||||||| |||||||||||||||||| | || |
Sbjct 1125 GGATGTTGAT-GAAGAGACTAAACCT-GAAAATGATGGAGATGCCAAGATGGTAGACTTG 1182
Query 688 GAGAATGAGACAGCTGTTACTGTCTCTGAGAATGGAGGTGACAGAGCTGCAGATGAAGAC 747
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1183 GAGAATGAGACAGCTGCTACTGTCTCTGAGAGTGGAGGTGATGGAGCTGCAGATGAAGAG 1242
Query 748 GAAATTGATCCCTTAGATGCTTTTATGAATACTATGGTATTACCTGAGGTTGAAAAGCTT 807
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1243 GAAATTGATCCTTTAGATGCTTTTATGAATACTATGGTATTACCTGAGGTTGAGAAGCTT 1302
Query 808 AGCAAT-AT--T-GT------G-A-T---CGATGGTATTTTGGATTTTAAAATGAATGGG 852
|||||| | | | | | | ||||||||||||||||| |||||||||||||
Sbjct 1303 AGCAATGGTGCTCCTCCCCCAGCAGTCAACGATGGTATTTTGGATTCTAAAATGAATGGG 1362
Query 853 AAGGAAACTGGTGACCAAGCCAAA-AAAGGTTTTAATAAGGCCGCCCTTGGTAGGATAAT 911
||||||| || ||||| ||||||| |||||||||||||| | |||||||||||||||||
Sbjct 1363 AAGGAAAGTGATGACC-AGCCAAAGAAAGGTTTTAATAA-G--GCCCTTGGTAGGATAAT 1418
Query 912 TCAAGGTGAAGATTCTGATTCAGATTACTCAGAACCAAAGAGTGATGATGATCCAAGTTT 971
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1419 TCAAGGTGAAGATTCTGATTCAGATTATTCAGAACCAAAGAATGATGATGATCCAAGTTT 1478
Query 972 AGACGAAGACGACGAGGAGTTTATGAAGAGAGTTAAGAAGACAAAAGCAGAGAAATTGTC 1031
||||||||| || |||||||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1479 AGACGAAGATGATGAGGAGTTCATGAAGAGAGTGAAGAAGACAAAAGCTGAGAAGTTGTC 1538
Query 1032 TCTTGTTGACCACTCCAAAATAGAGTATGAACCTTTCCGGAAGAATTTTTATATCGAAGT 1091
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1539 CCTTGTTGACCACTCAAAAATAGAGTATGAACCTTTCCGGAAGAACTTCTATATCGAAGT 1598
Query 1092 CAAGGATATCTCAAGGATGACACAGGATGCAGTGAACGCTTATAGAAAGGAATTGGAGCT 1151
||||||||||| ||||||||||| || | ||| ||| |||| |||||||||||||||||
Sbjct 1599 GAAGGATATCTCTAGGATGACACAAGAAGAAGTTAACACTTACAGAAAGGAATTGGAGCT 1658
Query 1152 GAAAGTTCATGGGAAA-GATGTTCCAAGACCCATTCAA-TTTTGGCACCAGACTGGATTA 1209
|||||||||| ||||| |||||||||||||||| | || ||||||||||||||||| ||
Sbjct 1659 GAAAGTTCAT-GGAAAGGATGTTCCAAGACCCA-TAAAGTTTTGGCACCAGACTGGGCTA 1716
Query 1210 ACTAGCAAAATTTTGGATACTCTGAAGAAGCTTAACTATGAAAAGCCAATGCCTATCCAA 1269
|| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 1717 ACCAGCAAAATTTTGGATACTATGAAGAAGCTTAATTATGAAAAGCCAATGCCTATTCAA 1776
Query 1270 GCACAAGCACTTCCAATCATCATGAGCGGTAGAGACTGCATTGGGGTTGCCAAAACCGGG 1329
|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1777 ACACAAGCACTCCCAATCATCATGAGCGGTCGAGACTGCATTGGGGTTGCAAAAACTGGT 1836
Query 1330 TCAGGTAAAACCCTTGGCTTTGTTTTGCCTATGTTGAGGCATATCAAAGATCAGCCTCCC 1389
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1837 TCAGGTAAAACCCTTGGTTTTGTTTTGCCAATGCTGAGGCATATCAAAGATCAGCCTCCC 1896
Query 1390 GTTGAAGCTGGTGATGGGCCGATTGGGCTTGTAATGGCACCTACTAGAGAACTTGTTCAG 1449
|||||||||||||||||||| ||||||||||||||||||||||| || || |||||||||
Sbjct 1897 GTTGAAGCTGGTGATGGGCCAATTGGGCTTGTAATGGCACCTACGAGGGAGCTTGTTCAG 1956
Query 1450 CAGATTTACAGCGATATCAGAAAGTTTTCTAAGGCATTGGGTATAATATGTGTGCCTGTG 1509
|||||| |||||||||||||||||||||||||| |||||||||||| ||| || ||||||
Sbjct 1957 CAGATTCACAGCGATATCAGAAAGTTTTCTAAGCCATTGGGTATAAGATGCGTCCCTGTG 2016
Query 1510 TATGGAGGATCTGGAGTTGCCCAGCAAATCAGTGAGCTTAAGCGAGGTACCGAGATTGTT 1569
||||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct 2017 TATGGAGGATCAGGAGTTGCCCAGCAAATTAGTGAACTTAAACGAGGTACTGAGATTGTT 2076
Query 1570 GTTTGTACTCCTGGAAGAATGATCGATATTCTTTGCACAAGCAGTGGAAAAATTACCAAT 1629
|| || |||||||| |||||||| ||||| ||||||||||||||||| ||||| || |||
Sbjct 2077 GTGTGCACTCCTGGCAGAATGATTGATATCCTTTGCACAAGCAGTGGGAAAATCACTAAT 2136
Query 1630 CTACGAAGGGTCACATATTTGGTAATGGATGAAGCTGATCGTATGTTTGATATGGGTTTT 1689
|| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2137 CTGCGAAGAGTCACATTTTTGGTAATGGATGAAGCTGATCGTATGTTTGACATGGGTTTT 2196
Query 1690 GAGCCTCAAATAACTCGCATTGTTCAAAATATTCGACCTGATCGTCAAACTGTGCTCTTT 1749
||||||||||| ||||| ||| |||| || |||||||| || |||||||||||||| |||
Sbjct 2197 GAGCCTCAAATTACTCGTATTATTCAGAACATTCGACCGGAACGTCAAACTGTGCTTTTT 2256
Query 1750 TCTGCCACTTTTCCACGCCAAGTTGAAACTTTGGCACGTAAAGTCTTGAACAAGCCTGTG 1809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257 TCTGCCACTTTTCCACGCCAAGTTGAAACTTTGGCACGTAAAGTCTTGAACAAGCCTGTA 2316
Query 1810 GAGATACAGGTCGGTGGGAGGAGTGTTGTGAATAAAGATATAACTCAGTTAGTTGAAATC 1869
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2317 GAAATACAGGTCGGTGGAAGGAGTGTTGTGAATAAGGATATAACTCAGTTAGTTGAAGTC 2376
Query 1870 AGACCCGAGAGTGAGAGGTTCTCAAGACTTCTGGAACTTCTTGGGGAATGGTATGAGAAA 1929
||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2377 AGACCGGAGAGTGATAGGTTCTTTAGACTTCTGGAACTTCTTGGGGAATGGTATGAGAAA 2436
Query 1930 GG-AAAAGTTTTGGTCTTTGTTC-GTTCGCAGGAAAAAT 1966
|| |||| || |||| ||||||| || ||||||||||||
Sbjct 2437 GGGAAAA-TTCTGGTTTTTGTTCAGT-CGCAGGAAAAAT 2473
Score = 1016 bits (550), Expect = 0.0
Identities = 889/1044 (85%), Gaps = 58/1044 (6%)
Strand=Plus/Plus
Query 1967 CTATATCTGATTTTAAGAGCGATGTCTGCAATTTGTTGATCGCCACAAGTGTTGCAGCCA 2026
|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| || |
Sbjct 2561 CTATCTCTGATTTTAAGAGCAATGTCTGCAATTTGTTGATTGCCACAAGTGTTGCGGCTA 2620
Query 2027 GGGGTCTAGATGTGAAAGAGCTCGAGTTGGTTGTAAACTTCGATGCACCAAACCACTATG 2086
|||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||||
Sbjct 2621 GGGGTCTAGATGTGAAAGAGCTTGAGTTAGTTGTAAACTTTGATGCGCCGAACCACTATG 2680
Query 2087 AAGACTATGTGCATCGTGTTGGTAGGACAGGTAGGGCAGGGCGGAAAGGCTGTGCTGTAA 2146
|||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| |
Sbjct 2681 AAGATTATGTGCATCGCGTTGGCAGGACAGGCAGGGCAGGGCGTAAAGGCTGTGCTGTGA 2740
Query 2147 CATTTATCTCTGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGAACTAT 2206
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2741 CATTTATCTCCGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGAACTTT 2800
Query 2207 CTGAGCAGCCAGTTCCTGATGATGTTAAAGCAGTAGCCGAAGGGTTCATGGCGAAAGTAA 2266
||||||||||||||||||||||| | |||||| | || || || |||||||||||||| |
Sbjct 2801 CTGAGCAGCCAGTTCCTGATGATCTGAAAGCACTTGCTGATGGTTTCATGGCGAAAGTGA 2860
Query 2267 AACAGGGTATTGAGCAAGCTCATGGAACTGGCTATGGTGGAAGTGGCTTTAAATTCAACG 2326
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2861 AACAGGGTATTGAGCAAGCTCATGGAACTGGCTATGGTGGTAGTGGCTTTAAATTCAACG 2920
Query 2327 AAGAGGAGGATGAAGTTAGGAAAGCAGCAAAGAAAGCACAAGCGAAGGAGTATGGCTTTG 2386
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2921 AAGAGGAGGAAGAAGTTAGAAAAGCAGCAAAGAAAGCACAAGCAAAGGAGTATGGCTTTG 2980
Query 2387 AAGAAGAGAAGTCTGACTCAGAAGATGAGAATGATGTAGTAAGAAAGGC---TGGTGGTG 2443
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2981 AGGAAGACAAGTCTGACTCAGAAGATGAGAATGATGTAGTAAGAAAGGCAGGTGGTGGTG 3040
Query 2444 ATATCTCACAGCAGCAGATTACTCTTGCTCAGATAGCCGCCATTGCTTCTGCTGC----- 2498
| ||||||||||||||| |||| ||||||||||||| ||||||||| |||||||
Sbjct 3041 AGATCTCACAGCAGCAGGCTACTTTTGCTCAGATAGCTGCCATTGCTGCTGCTGCCAAAG 3100
Query 2499 -T--T-C---T--A---AG-GCTCCTGTGACTGCTAACCAATTGCTTCCAAATGGTGGTG 2545
| | | | | || ||||||||||| ||||||||| |||| ||||||||||| |
Sbjct 3101 CTGCTGCCGCTCCAGTGAGTGCTCCTGTGACAGCTAACCAACTGCTGCCAAATGGTGGCG 3160
Query 2546 GGCTAGCCAC--TG--AG----CCA---GGT-A-T---CC--C--T-CCTACTGATGGAG 2584
|||| ||| | || || || ||| | | || | | |||| ||| || |
Sbjct 3161 GGCTTGCCGCCATGCCAGGTGTCCTTCCGGTTACTGTTCCTACCCTTCCTAGTGAAGGGG 3220
Query 2585 CAGGCCGCGTTGCAGCCATGATTGCTG-C-TGCTAA-CGTGCAACAGTACCTTGCAAAGA 2641
||||||| | |||||||||| |||||| | || || | ||||||| |||| |||||||
Sbjct 3221 CAGGCCGTGCTGCAGCCATGGTTGCTGTCATG--AATC-TGCAACACAACCTGGCAAAGA 3277
Query 2642 TTCAAGCTGATGCGATACCTGAACACTATGAAGCAGAA-TTGGAAATCAATGATTTCCCA 2700
||||||| ||||| || ||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 3278 TTCAAGCGGATGCAATGCCTGAGCACTATGAAGCAGAACTTG-AAATCAATGATTTCCCA 3336
Query 2701 CAGAATGCTCGGTGGAAAGTTACCCACAAAGAAACGCTGGGACCAATATCAGAGTGGAGT 2760
|| |||||||| ||||| || |||||||||||||| |||| |||||||||||||||| |
Sbjct 3337 CAAAATGCTCGTTGGAAGGTCACCCACAAAGAAACTTTGGGTCCAATATCAGAGTGGACT 3396
Query 2761 GGAGCTTCCATTACCACTAGAGGTAAGTTTTATGAGGCAGGACGTATCCCGGGACCTGAG 2820
||||| | |||||||| || ||| |||||||| |||||||||| |||||||||| |
Sbjct 3397 GGAGCCGCTATTACCACCAGGGGTCAGTTTTATCCTACAGGACGTATACCGGGACCTGGG 3456
Query 2821 GAACGCAAGCTCTATTTGTTCGTCGAAGGGCCTACCGAAATATCTGTTAAGACA-GCGAA 2879
||||| ||||| || || ||| | ||||| |||| ||||| ||| |||||| || || ||
Sbjct 3457 GAACGGAAGCTGTACTTATTCATTGAAGGACCTAGCGAAAAATCAGTTAAG-CAAGCAAA 3515
Query 2880 AGCTGAACTCAAGCGTGTTCTTGAAGACATAACTAACCAAACC-T-TC-TCCCTTCCTGG 2936
|| ||||||||||||||||||||||||||| || || || || | || || ||||||||
Sbjct 3516 AGTTGAACTCAAGCGTGTTCTTGAAGACATTACAAATCAGGCCATGTCCTCACTTCCTGG 3575
Query 2937 AGGAGCACAATCAGGCAGATACTC 2960
||||||| | | |||||||||||
Sbjct 3576 AGGAGCA-AC-C-GGCAGATACTC 3596
> Ahg341099 jgi|Araly1|341099|fgenesh1_pg.C_scaffold_3000862
Length=978
Score = 433 bits (234), Expect = 4e-120
Identities = 303/334 (91%), Gaps = 14/334 (4%)
Strand=Plus/Plus
Query 2613 TGCTAACGTGCAACAGTACCTTGCAAAGATTCAAGCTGATGCGATACCTGAACACTATGA 2672
||||||||||||||| |||||||||||||||||||| | | | | | |||||||
Sbjct 647 TGCTAACGTGCAACACTACCTTGCAAAGATTCAAGC---T-C-A-A--T----ACTATGA 694
Query 2673 AGCAGAATTGGAAATCAATGATTTCCCACAGAATGCTCGGTGGAAAGTTACCCACAAAGA 2732
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 695 AGCAGAGTTGGAAATCAATGATTTCCCACAGAATGCTCAGTGGAAAGTTACCCACAAAGA 754
Query 2733 AACGCTGGGACCAATATCAGAGTGGAGTGGAGCTTCCATTACCACTAGAGGTAAGTTTTA 2792
|||||| | |||||||| ||||| |||| ||||||||||||| | ||||||||||||||
Sbjct 755 AACGCTTGAACCAATATGAGAGTAGAGTAGAGCTTCCATTACGA--AGAGGTAAGTTTTA 812
Query 2793 TGAGGCAGGACGTATCCCGGGACCTGAGGAACGCAAGCTCTATTTGTTCGTCGAAGGGCC 2852
|||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 813 TGAGGCAGGACGTATCACGGGACCTGGGGAACGCAAGCTCTATTTGTTCGTTGAAGGGCC 872
Query 2853 TACCGAAATATCTGTTAAGACAGCGAAAGCTGAACTCAAGCGTGTTCTTGAAGACATAAC 2912
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 873 TACCGAAAAATCTGTTAAGACAGCGAAAGCTGAACTCAAGCGTGTTGTTGAAGACGTAAC 932
Query 2913 TAACCAAACCTTCTCCCTTCCTGGAGGAGCACAA 2946
||| ||| ||||||||||||||||||||||||||
Sbjct 933 TAATCAAGCCTTCTCCCTTCCTGGAGGAGCACAA 966
Score = 379 bits (205), Expect = 6e-104
Identities = 240/256 (94%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 2309 GTGGCTTTAAATTCAACGAAGAGGAGGATGAAGTTAGGAAAGCAGCAAAGAAAGCACAAG 2368
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 395 GTGGCTTTAAATTCAACGAAGAGGAGGATGAAGTTAGGAAAGCTGCAAAGAAAGCACAAG 454
Query 2369 CGAAGGAGTATGGCTTTGAAGAAGAGAAGTCTGACTCAGAAGATGAGAATGATGTAGTAA 2428
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CAAAGGAGTATGGCTTTGAGGAAGAGAAGTCTGACTCAGAAGATGAGAATGATGTAGTAA 514
Query 2429 GAAAGGCTGGTGGTGATATCTCACAGCAGCAGATTACTCTTGCTCAGATAGCCGCCATTG 2488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CAAAGGCTGGTGGTGATATCTCACAGCAGCAGATTACTCTTGCTCAGATAGCCGCCATTG 574
Query 2489 CTTCTGCTGCTTCTAAGGCTCCTGTGACTGCTAACCAATTGCTTCCAAATGGTGGT-GGG 2547
|| || |||| ||| ||||||||||||||||||||||||| ||||||| || | |||
Sbjct 575 CTGCTCCTGCAA--AAG-CTCCTGTGACTGCTAACCAATTGCTGCCAAATGCTG-TCGGG 630
Query 2548 CTAGCCACTGAGCCAG 2563
|||||||| |||||||
Sbjct 631 CTAGCCACCGAGCCAG 646
Score = 329 bits (178), Expect = 6e-89
Identities = 188/193 (97%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 2032 CTAGATGTGAAAGAGCTCGAGTTGGTTGTAAACTTCGATGCACCAAACCACTATGAAGAC 2091
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CTAGATGTGAAAGAGCTTGAGTTGGTTGTAAACTTCGATGCACCAAACCACTATGAAGAC 246
Query 2092 TATGTGCATCGTGTTGGTAGGACAGGTAGGGCAGGGCGGAAAGGCTGTGCTGTAACATTT 2151
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 247 TATGTGCATCGTGTTGGCAGGACAGGTAGGGCAGGACGGAAAGGCTGTGCTGTAACATTT 306
Query 2152 ATCTCTGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGAACTATCTGAG 2211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTCTCTGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGAACTATCTGAG 366
Query 2212 CAGCCAGTTCCTG 2224
||||||||||||
Sbjct 367 GAGCCAGTTCCTG 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112137681280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5