BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09630.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478282 jgi|Araly1|478282|fgenesh2_kg.3__983__AT3G09630.2 2222 0.0
Ahg487065 jgi|Araly1|487065|fgenesh2_kg.6__199__AT5G02870.1 1454 0.0
> Ahg478282 jgi|Araly1|478282|fgenesh2_kg.3__983__AT3G09630.2
Length=1418
Score = 2222 bits (1203), Expect = 0.0
Identities = 1344/1412 (95%), Gaps = 9/1412 (1%)
Strand=Plus/Plus
Query 4 AAACCCTAATTTCTCAAAGAGTCTAAagagacggagagtgagagaagagagaAACATTTC 63
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | ||
Sbjct 10 AAACCCTAATTTCTCAAAGAGTCTACAGAGACAGAGAGTGAGAGAAGAGAGAAACCTATC 69
Query 64 GAGACAAATGGCCGCCGCCGCTGCTCGTCCTCTCGTCACCATCCAAACCTTGGATGGTGA 123
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 70 GAGACAAATGGCCGCCGCCGCTACTCGTCCTCTCGTCACCGTCCAAGTTTTGGATGGTGA 129
Query 124 CATGTCCACCGATCAATCCTCCACCGTCGTACTT-CCCGACGTCATGACGGCGCCAGTTC 182
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 130 CATGTCCACCGATCAATCCTCCACCGTCGTA-TTACCCGACGTCATGACGGCGCCAGTTC 188
Query 183 GACCAGACATCGTTAACTTCGTTCACGCCCAAATCTCCAACAACAGCCGTCAGCCATACG 242
| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 189 GTCCAGACATCGTTAACTTTGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACG 248
Query 243 CCGTATCGAAGAAGGCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACCGGACGTGCCG 302
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 249 CCGTCTCAAAGAAGGCCGGTCACCAGACCTCCGCGGAGTCCTGGGGAACCGGACGTGCCG 308
Query 303 TGTCTCGTATCCCTCGTGTTCCCGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCG 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 309 TGTCTCGTATCCCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCG 368
Query 363 GTAACATGTGTCGTGGTGGTCGTATGTTCGCTCCAACCAAGATCTGGCGCCGCTGGCACC 422
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 369 GTAACATGTGTCGTGGTGGTCGGATGTTCGCTCCTACCAAGATCTGGCGCCGCTGGCACC 428
Query 423 GTCGTGTCAATGTCAACATGAAGCGTCACGCAATCGTCTCAGCTATCGCTGCAACTGCTG 482
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 429 GTCGTGTCAATGTGAACATGAAGCGTCACGCAATCGTCTCAGCCATCGCCGCAACTGCTG 488
Query 483 TTCCTGCGCTTGTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTG 542
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TACCTTCGCTTGTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTG 548
Query 543 TTGTGAGTGACTCCGCCGAAGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTTTTGAAAC 602
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 549 TTGTGAGTGACTCCGCCGAGGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTACTGAAAC 608
Query 603 AGATCGGTGCTTATGATGATGCTGAGAAGGCAAAGAACAGCATTGGAATCCGTCCTGGTA 662
||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 609 AGATCGGGGCTTATGATGATGCTGAGAAGGCAAAGGATAGCATTGGGATCCGTCCTGGTA 668
Query 663 AAGGTAAAATGAGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTGGTGGTTTATGGAA 722
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 669 AAGGTAAAATGAGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTGGTTTATGGAA 728
Query 723 CTGAAGGATCTAAGATAGTTAAGGCGTTTAGAAACCTTCCTGGTGTTGAGCTTTGTCATG 782
|||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 729 CTGAAGGAGCTAAGATAGTTAAGGCGTTTAGGAATCTTCCTGGTGTTGAGCTCTGTCATG 788
Query 783 TGGAGAGGCTTAATTTGTTGAAGCTTGCTCCTGGTGGTCACCTTGGTCGGTTTGTGATCT 842
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 789 TGGAGAGGCTTAATTTGTTGAAGCTTGCTCCTGGTGGTCACCTTGGGCGGTTTGTGATCT 848
Query 843 GGACCAAGTCTGCCTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAG 902
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GGACCAAGTCTGCTTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAG 908
Query 903 AGAAGAAGAAGGGGTATGTGCTTCCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGA 962
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AGAAAAAGAAGGGATATGTGCTTCCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGA 968
Query 963 TTATCAATTCAGATGAGATTCAGAGTGTTGTGAATCCGATCAAGAAGGATGCGAAGAGGG 1022
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 969 TTATCAACTCAGATGAGATTCAGAGTGTTGTGAAGCCGATCAAGAAGGATGCGAAGAGGG 1028
Query 1023 CTGTTCTTAAGAAGAATCCATTGAAGAATCTCAATGTGATGTTGAAGTTGAATCCTTATG 1082
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1029 CTGTTCTTAAGAAGAATCCATTGAAGAATCTGAATGTGATGTTGAAGCTGAATCCTTATG 1088
Query 1083 CTAAGACCGCGAAGAGGATGTCACTGTTAGCTGAAGCACAGAGAGTTAAGGCTAAGAAGG 1142
||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1089 CTAAGACTGCTAAGAGGATGTCACTGTTGGCTGAAGCACAAAGAGTTAAGGCTAAGAAGG 1148
Query 1143 AGAAGCTCGCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAG 1202
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AGAAGCTTTCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAG 1208
Query 1203 CAGGCAAGTCGTGGTACAAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACT 1262
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CAGGCAAGTCGTGGTACCAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACT 1268
Query 1263 TCACCAAATGGCTCGGTGCTAGCCAGTAATAATCTCGTCTGCTTTGGAACACTTTCCATA 1322
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1269 TCACCAAATGGCTCGGTGCTAGCCAGTAATAAG-TCATCTGCTGTGGAACACTTTCCATA 1327
Query 1323 TTTT-AGTCAAAAGATTTTGGttttttt----AATCTGTTTTGTCTTTGGGTGTCTGGAT 1377
|||| ||||||| ||||||| ||||||| |||||| ||||||||| || ||||||||
Sbjct 1328 TTTTTAGTCAAA-GATTTTGTTTTTTTTTTTTAATCTGCTTTGTCTTTTGGAGTCTGGAT 1386
Query 1378 ATCAAGTTGAATTATGAACAAGTTTCACTTTT 1409
|| |||||||||||||||||||||||||||||
Sbjct 1387 ATTAAGTTGAATTATGAACAAGTTTCACTTTT 1418
> Ahg487065 jgi|Araly1|487065|fgenesh2_kg.6__199__AT5G02870.1
Length=1457
Score = 1454 bits (787), Expect = 0.0
Identities = 1116/1275 (88%), Gaps = 22/1275 (2%)
Strand=Plus/Plus
Query 80 GCCGCTGCTCGTCCTCTCGTCACCATCCAA-ACCTTGGATGGTGACATGTCCACCGATCA 138
||||| || || |||||||||||| ||||| |||| || ||||||||| |||||||||
Sbjct 58 GCCGCCGCACGACCTCTCGTCACCGTCCAAGGCCTT-GACGGTGACATGAGCACCGATCA 116
Query 139 ATCCTCCACCGTCGTAC-TT-CCCGACGTCATGACGGCGCCAGTTCGACCAGACATCGTT 196
|||| |||||||| || || || ||||||||||| || || ||||| |||||||||||
Sbjct 117 ATCCACCACCGTC--ACTTTACCTGACGTCATGACTGCTCCCGTTCGTCCAGACATCGTC 174
Query 197 AACTTCGTTCACGCCCAAATCTCCAACAACAGCCGTCAGCCATACGCCGTATCGAAGAAG 256
|||||||| |||||||||||||||||||| ||||||||||| ||||| || || || ||
Sbjct 175 AACTTCGTCCACGCCCAAATCTCCAACAATAGCCGTCAGCCTTACGCAGTCTCCAAAAAA 234
Query 257 GCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACCGGACGTGCCGTGTCTCGTATCCCT 316
||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||||
Sbjct 235 GCCGGTCACCAAACCTCTGCCGAGTCATGGGGAACCGGAAGAGCCGTGTCTCGTATCCCT 294
Query 317 CGTGTTCCCGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCGGTAACATGTGTCGT 376
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 295 CGTGTTCCCGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGTAACATGTGTCGT 354
Query 377 GGTGGTCGTATGTTCGCTCCAACCAAGATCTGGCGCCGCTGGCACCGTCGTGTCAATGTC 436
|||||||||||||| ||||| || ||||||||| | ||||||||||||||||||||||||
Sbjct 355 GGTGGTCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTC 414
Query 437 AACATGAAGCGTCACGCAATCGTCTCAGCTATCGCTGCAACTGCTGTTCCTGCGCTTGTG 496
||||||||| | ||||| || || || || ||||| || ||||||||||| || ||||||
Sbjct 415 AACATGAAGAGACACGCGATTGTTTCTGCAATCGCCGCTACTGCTGTTCCAGCTCTTGTG 474
Query 497 ATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTGAGTGACTCC 556
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 475 ATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGTGATTCA 534
Query 557 GCCGAAGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTTTTGAAACAGATCGGTGCTTAT 616
|| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 535 GCTGAAGCTGTGGAGAAGACATCAGCTGCGATCAAGGTTTTGAAGCAGATCGGTGCTTAC 594
Query 617 GATGATGCTGAGAAGGCAAAGAACAGCATTGGAATCCGTCCTGGTAAAGGTAAAATGAGG 676
|| ||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 595 GACGATGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGG 654
Query 677 AACCGTCGTTACATTTCTAGGAAAGGTCCTCTGGTGGTTTATGGAACTGAAGGATCTAAG 736
|||||||||||||||||||||||||||||||| || || ||||||||||||||| | |||
Sbjct 655 AACCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTATGGAACTGAAGGAGCCAAG 714
Query 737 ATAGTTAAGGCGTTTAGAAACCTTCCTGGTGTTGAGCTTTGTCATGTGGAGAGGCTTAAT 796
|| ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 715 ATTGTTAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCATGTTGAGAGACTTAAC 774
Query 797 TTGTTGAAGCTT-GCTCCTGGTGGTCACCTTGGTCGGTTTGTGATCTGGACCAAGTCTGC 855
|||||||| || ||||||||||||||||||||| |||||||||| ||||| ||||| ||
Sbjct 775 TTGTTGAAA-TTAGCTCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCAGC 833
Query 856 CTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAGAGAAGAAGAAGGG 915
||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 834 TTTTGATAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCGTCAGAGAAGAAGAAGGG 893
Query 916 GTATGTGCTT-CCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGATTATCAATTCAG 974
||||| ||| |||||| | |||||| ||||||||||||||||||||||||| || || |
Sbjct 894 TTATGT-CTTGCCTCGTTCGAAGATGTTGAATGCTGATCTTGCCAGGATTATTAACTCCG 952
Query 975 ATGAGATTCAGAGTGTTGTGAATCCGATCAAGAAGGATGCGAAGAGGGCTGTTCTTAAGA 1034
||||| | |||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct 953 ATGAGGTACAGAGTGTGGTGAACCCGATTAAGAAGGATGCGAAGAGAGCTGTTCTGAAGA 1012
Query 1035 AGAATCCATTGAAGAA-TCTCAATGTGATGTTGAAGTTGAATCCTTATGCTAAGACCGCG 1093
|||||||||||||||| | | ||||||||| | ||||||||||||||||||||||| ||
Sbjct 1013 AGAATCCATTGAAGAACTTT-AATGTGATGCTCAAGTTGAATCCTTATGCTAAGACTGCT 1071
Query 1094 AAGAGGATGTCACTGTTAGCTGAAGCACAGAGAGTTAAGGCTAAGAAGGAGAAGCTCGCC 1153
||||||||||| ||||| |||||||| || || |||||||| ||||||||||||||||
Sbjct 1072 AAGAGGATGTCTCTGTTGGCTGAAGCTCAAAGGGTTAAGGCGAAGAAGGAGAAGCTCGAG 1131
Query 1154 AAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAGCAGGCAAGTCG 1213
|||||||||||| ||| || ||||||||||| || |||||||||||||||||| |
Sbjct 1132 AAGAAGAGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCA 1191
Query 1214 TGGTACAAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACTTCACCAAATGG 1273
|||||| |||||||||| || |||||||| ||||||||||| |||||||||||||| |||
Sbjct 1192 TGGTACCAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGG 1251
Query 1274 CTCGGTGCTAGCCAGTAATAAT-CTCGTC-TGCTTTGGAACACTT-TC-CATATTTTAGT 1329
|| || ||||| ||||||| || || || | | | | || | || || ||||||| ||
Sbjct 1252 CTTGGCGCTAGTCAGTAATGATGCTT-TCAT-CATCGCAA-A-TTCTCTCATATTT-AGG 1306
Query 1330 CAAAAGATTTTGGtt 1344
|||| ||||||||||
Sbjct 1307 CAAA-GATTTTGGTT 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5