BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09670.1
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478288 jgi|Araly1|478288|fgenesh2_kg.3__989__AT3G09670.2 2052 0.0
> Ahg478288 jgi|Araly1|478288|fgenesh2_kg.3__989__AT3G09670.2
Length=2446
Score = 2052 bits (1111), Expect = 0.0
Identities = 1322/1419 (93%), Gaps = 34/1419 (2%)
Strand=Plus/Plus
Query 31 aaaaCGAGAAACCCGTTTCTGGTTCGATTTGACGTCTTCGTTTACTTCATTTCTATAAAC 90
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||
Sbjct 36 AAAACGAGAAACCCGTTTCTGGTTAGATTTGACGTCTTCGTTTACTTCA-TTCAAGAAAC 94
Query 91 GAGCTCCCGCCGCCGGAAAATTCGCTGTTCATCACCACCGTGACC--A-G--AG--GGTT 143
|||||||||||||||||||||||||||| |||| ||||| ||| | | | ||||
Sbjct 95 TAGCTCCCGCCGCCGGAAAATTCGCTGTTTATCAAGACCGTCACCGGAGGTTTGTTGGTT 154
Query 144 TTGTTTTGGTACTGCTTATGTCGACGGAATCAGAACGTATTGAATCAGTCTCAGAGGCTA 203
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 155 TTGTTTTGGTACTGCTTATGTCGACGGAATCAGAGCGTGTTGAATCAGTCTCAGAGGCTA 214
Query 204 ATGCGTCGA-GTTTAGAGGTC-GGAAATGATCAAATGTCTGAAGCCCTAGCTGGTCAAGC 261
|||||||| |||| |||| | ||||||||| ||||||||||| ||||||||||||||||
Sbjct 215 GTGCGTCGAGGTTT-GAGG-CTGGAAATGATAAAATGTCTGAAACCCTAGCTGGTCAAGC 272
Query 262 TCAGGAGCTGAAAACAATTGGAGATGATAAAGAAGGATGCGGCAACTTTGCTTCAGCTGG 321
||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 273 TCAGGAGCTGAAAACAAATGGAGATGATAAAGAAGGAAGCGGCAACTTAGCTTCAGCTGC 332
Query 322 TGATAATGGGATGGAGAAAGTAAATGGATTTACTAATCTTGTTAAGGAAACGGAATCTGT 381
|||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||
Sbjct 333 TGATAATGGGATGGAGAAAGTAAATGGATTTACTGATCTGGAGAAGGAAACTGAATCTGT 392
Query 382 AAATGGAGAGTTAGATCTAGGCACTAGAACCGAAAATGTAGGTGGAGAGAGTAACCAAAG 441
|||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 393 AAATGGAGGGTTAGATCTAGGCACTGGAACCGAAAATGTTGGTGGAGAGAGTAACGGAAG 452
Query 442 TGACAAGAAGGTTCTAGTAGATAGCGAAGAGGTCA-TGATGGTAGAGAAAAGGGGGCTTC 500
||| || ||||| |||||||||||||||||||| | ||||||||||| |||||| ||||
Sbjct 453 TGAGAACAAGGTCCTAGTAGATAGCGAAGAGGT-ATTGATGGTAGAGGAAAGGGAGCTT- 510
Query 501 TTG-TTGAGAAGGAAGTGGAACCTGACATGGTCTGTTCTCATGGCGCTGATCTCAGTGAT 559
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 511 TTGATTGAGAAGGAAATGGAACCTGACATGGTCTGTTCTCATGGCGCTGATCTTAGTGAT 570
Query 560 GTGAAGGTTTCTGATGGCAGACTGGATAGTGAAGACCTTGTTCAGGATAGAAAACCCGAT 619
||||||| | | | |||| |||||||||||||| | |||||||||||| ||||
Sbjct 571 GTGAAGG--T-T--T------CTGG-TAGTGAAGACCTTGGTGAGGATAGAAAACTCGAT 618
Query 620 GGCTTAGAAAAGCAAGGAACAAAAGTTGAGGACTTGGATGTTGTATGTTTTATGGGTTTA 679
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 619 GGCTTAGAAAAGCGAGGAACACAAGTTGAGGACTTGGATGTTGTATGTTTTATGGGTTTA 678
Query 680 GAACCGCATGAGAGCAAGGATGAG-AGTATTTTGGATGATGA-AATTGCCCATGTAGCTG 737
||| ||||||||||||||||| || ||||||||||||||||| |||| ||| |||| |||
Sbjct 679 GAAGCGCATGAGAGCAAGGAT-AGAAGTATTTTGGATGATGATAATTTCCC-TGTAACTG 736
Query 738 CGAAGGTGAAGATCTCTGACTCAGATTTGGTTTGGGCTAAAGTAAGGAGCCATCCGTGGT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CGAAGGTGAAGATCTCTGACTCAGATTTGGTTTGGGCTAAAGTAAGGAGCCATCCGTGGT 796
Query 798 GGCCTGGACAGGTGTTTGATGCCTCGGCTGCAACAGACAAGGCGAAGAAGCATTTCAAGA 857
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 797 GGCCTGGACAGGTGTTTGATGCCTCGGCTGCAACAGACAAGGCGAAGAAGTATTTCAAGA 856
Query 858 AAGGAAGTTTCTTAGTAACTTATTTTGGAGATTGCACCTTTGCTTGGAATGAGGCGTCAC 917
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 857 AAGGAAGTTTCTTAGTAACTTATTTTGGAGATTGCACCTTTGCTTGGAATGATGCATCAC 916
Query 918 GGATTAAGCCTTTTCGACAGCATTTCTCCCAAATGGCAAAGCAGAGTAGTCTACCTGATT 977
|||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||
Sbjct 917 GGATAAAGCCTTTTCGACAGCACTTCCCCCAAATGGCAAAGCAAAGTAGTCTACCCGATT 976
Query 978 TTATTGATGCTATTGATTTTGCGTTAGAAGAGGTATCAAGAAGGATAGAGTTTGGTTTAG 1037
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 977 TTATTGATGCTATTGATTTTGCTTTAGAAGAGGTATCAAGAAGGATAGAGTTTGGTTTAG 1036
Query 1038 CTTGTTCTTGTATCTCAGAGGAAGTCTATCAGAAGATCAAGACTCAGAATGTAATCAATC 1097
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1037 CTTGTTCTTGTATCTCAGAGGAAGTCTATCAGAAGATCAAGACTCAGAATATAATCAATC 1096
Query 1098 CTGGAATCCGAGAAGATTCAAGCTCAATACACGGTGGAGACAAGGTCTCAAGTGCAGTCT 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTGGAATCCGAGAAGATTCAAGCTCAATACACGGTGGAGACAAGGTCTCAAGTGCAGTCT 1156
Query 1158 TCTTTGAACCTGCAAACCTTGTGGGATATGTGAAGCGTTTAGCATGCTCTCCTAGCTATG 1217
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1157 TCTTTGAACCTGCAGACCTTGTGGGATATGTGAAGCGTTTAGCATGTTCTCCTACCTATG 1216
Query 1218 ATGCTACTGATGCGCTGCAGCTTGTAAGTCAGAGAGCACAGTTATTAGCTTTTAATCGCT 1277
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1217 ATGCTACTGATGCGCTGCAGCTTGTAAGTCAGAGAGCACAATTATTAGCTTTTAATCGCT 1276
Query 1278 GGAAAGGCTATACTGACCTCCCCGAGTTTATGACACTCCAGGGGTCAGTAGAGTCTGCAC 1337
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1277 GGAAAGGCTACACTGACCTCCCTGAGTTTGTGACACTCCAGGGGTCAGTAGAGTCTGCAC 1336
Query 1338 CCAAGATTTCTCCTGCAGAAGAGCAAAGTAGCTTAGTGGAAGTTTCTGATCCTGAACC-A 1396
||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |
Sbjct 1337 CCAAGATTTCTCCTGCAGAAGAGAAAAGTAGCTTAGTGGAAGTCTCTGATCTTGAACCGA 1396
Query 1397 ACAAAGAGTAAACAAGTTTATACTAAAAGAAGAAAGACA 1435
| |||||||||||||||||||||||||||||||||||||
Sbjct 1397 A-AAAGAGTAAACAAGTTTATACTAAAAGAAGAAAGACA 1434
Score = 1334 bits (722), Expect = 0.0
Identities = 928/1022 (91%), Gaps = 35/1022 (3%)
Strand=Plus/Plus
Query 1485 AAGGTGACTGTAAACACGATGGAGTGTTTGAATATGAAGAAACTATTGTTCCAAAGAAAA 1544
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1442 AAGATGACTGTAAACACGATGGAGTGTTTGAATATGAAGAAACTACTGTTCCAAAGAAAA 1501
Query 1545 AGGAGAAAACTTTGGCAGAGTTCATTGCTGAGAAACGCGTAAGCAGACATAATGGGAACA 1604
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1502 AGGAGAAAACTTTGGCAGAGTTCATTGCTGAGAAACGCTTAAGCAGACATAATAGGAACA 1561
Query 1605 CATCACATGAAAAGTCTGGTAATGTTCCGCATTGCGAAAAGAAACGCAAGGTTGTGCAGT 1664
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1562 CATCACATGAAAATTCTGGTAAAGTTCCGCATTGCAAAAAGAAACGCAAGGTTGTGCAGT 1621
Query 1665 CAAAAGTTCCCAAGTCCACGAAAAAGATTAAGGCAAACCTGCAAACAGAGGATCCAGGAT 1724
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1622 CAAAAGTTCCCAAATCCACGAAAAAGATTAAGGAAAACCTGCAAACAGAGGATCCAGGAT 1681
Query 1725 CTCCAGTTTCTCCCAAAAATGATCGAAAAAATAATTTGTCTGCTGGTGATAAGATTACAC 1784
| ||| |||||| |||||||||||||||||| | | ||||||| ||||||||||| ||||
Sbjct 1682 CACCAATTTCTCACAAAAATGATCGAAAAAACAGTCTGTCTGCAGGTGATAAGATAACAC 1741
Query 1785 CACAGAAAGCTAGAAAAAGTTTCGGAATTGGGGCAAGCATATTGAAAGTGGCAAACCAGA 1844
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1742 CAGAGAAAGCTAGAAAAAGTTTCGGAATTGGGGCAAGCATATTGAAAGTAGCAAACCAGA 1801
Query 1845 TGCATTGTTCAACACCAACCAGACTCTTACCTTGCAGTGATTCGACCTCCAAAAAGGCAG 1904
|||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||
Sbjct 1802 TGCATTGTTCAACACCTACCCGACTCATACCTTGCAATGATTCGACCTCCAAAAAGGCAG 1861
Query 1905 CCAAGAGCAATGGCAGTGGAAAGAGTCTTCAGGAGAAACCTAAAGCCGAAGCATTATCAG 1964
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1862 CCAAGAGCAATGGCAATGGAAAAAGTCTTCAGGAGAAACCTAAAGCCGAAGCATTATCTG 1921
Query 1965 CAAGAGAAATTTCTCCTTCAACTA------CACTTTCAAGCCCTCACGCTGCTTCTGTTA 2018
|||||| |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1922 AAAGAGAGATTTCTCCTTCAACTAATGAAACACTTTCAAGCCCCCACGCTGCTTCTGTTT 1981
Query 2019 CCAAAACCACAAGTGGGAAATCCAATTCTGTCAGCCTAGACCAC-AACCTATCCGGAGAA 2077
|||||||| ||||||| ||||||||||| ||||| |||||||| ||| |||||||||||
Sbjct 1982 CCAAAACCCCAAGTGGAAAATCCAATTCCATCAGCGTAGACCACCAAC-TATCCGGAGAA 2040
Query 2078 CTTGATCAGGTCAGAAAGGAAGCTCCTAGTACTAACCTTGTGGAGGACCCGATGTTGGAG 2137
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 ATTGAACAGGTCATAAAGGAAGCTCCTAGTACTAACCTTGTGGAGGACCCGATGTTGGAG 2100
Query 2138 TCTAGAGACTTGAAAGACTCTTCTAAGGAGCAGGTCGTACATGAGGATAAGAAAGAAGCT 2197
||||| ||||||||||||||| |||| |||||| | ||||||||||||||||||||||||
Sbjct 2101 TCTAGGGACTTGAAAGACTCTGCTAAAGAGCAGATGGTACATGAGGATAAGAAAGAAGCT 2160
Query 2198 GCAAATGTAGCGGATGAGAAATCTATTAT---GGACAGCAATCTAACCGGGGAGAAAATC 2254
|||||| | |||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 2161 GCAAATATTGCGGATGAGAAAACTATTATTAAGGACAGCAATCTAATTGGGGAGAAAATC 2220
Query 2255 AGTGGCTTGGACTTGAGAGAGCAGCCGAGTAACAAGAACTGCTCTGGTGGATCTGATAGT 2314
|||||||||||||||| | ||||||| | |||||||||||| | ||||||||
Sbjct 2221 AGTGGCTTGGACTTGAAACAGCAGCC-A--AACAAGAACTGC-C--------CTGATAGT 2268
Query 2315 TGCAAGGAAGATGTTTCTGCAGAGTAGGAAGGCTCAGCATCAGCGTCTAACCCACTAATA 2374
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2269 TCCAAGGAAGATGTTTCTGCAGAGTAGGAAGGCTCAGCATCAGCGCCTAACCCACTAATA 2328
Query 2375 CAGATCTTTCTAAAA-TCGAGTCCGGTTCTTGTTAGTAC------CC-AAGAGTGGAATA 2426
||||| ||| ||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 2329 CAGATTTTT-TAAAAATCGTGTCCGGTTCTTGTTAGTACTTAGTACCCAAGAGTGGAATA 2387
Query 2427 TACCTTTTAGATGGATTCTCTTCTCTTTCAAAGTTTAGAATTGTATGATTTAATCAGAGT 2486
|||||| ||| || | | ||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 2388 TACCTTGTAGCTG-ACT-TCT-CTCTTTCGAAGTTTAGAATTGTATGATTTGATCAGAGT 2444
Query 2487 TG 2488
||
Sbjct 2445 TG 2446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94082905150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5