BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09680.1
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478290 jgi|Araly1|478290|fgenesh2_kg.3__991__AT3G09680.1 811 0.0
Ahg487072 jgi|Araly1|487072|fgenesh2_kg.6__206__AT5G02960.1 556 5e-158
> Ahg478290 jgi|Araly1|478290|fgenesh2_kg.3__991__AT3G09680.1
Length=508
Score = 811 bits (439), Expect = 0.0
Identities = 485/508 (95%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 12 AACTTAAAACGTCGCGCCTTTAGCAGTTTCAGCTCATCTCTCGACTTTTTCACTCGCGCC 71
||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1 AACTTAAAAGGTCGCGCCTTTAGCAGTTTCAGCTCATCTCTCTACTTTGTCTCTCGCGCC 60
Query 72 GTCGTCAACATGGGTAAGACACGTGGTATGGGAGCTGGTCGCAAGCTTAAGCAGCTTCGG 131
|||||||| ||||||||| ||||||||||||||||||| |||||||| |||| ||| |||
Sbjct 61 GTCGTCAATATGGGTAAGCCACGTGGTATGGGAGCTGGGCGCAAGCTGAAGCGGCTCCGG 120
Query 132 ATTACTCAGAGGTGGGCGGACAAGCATTACAAGAAGTCTAATCGAGGCAACGAGTGGAAG 191
|||| ||||| |||||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct 121 ATTAATCAGAAGTGGGCCGACAAGTATTACAAGAAGTCTCGCCAAGGCAACGAGTGGAAG 180
Query 192 AAGCCTTTTGCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAG 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCCTTTTGCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAG 240
Query 252 GCTAAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGTTGATCAAGAATGGT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTAAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGTTGATCAAGAATGGT 300
Query 312 AAAAAGATTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATTGAAGAAAATGAC 371
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 301 AAAAAGATTGCTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGAT 360
Query 372 GAGGTGTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGAGATATTCCCGGAGTT 431
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GAGGTGTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGTGATATTCCCGGAGTT 420
Query 432 AGGTTCAAAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGTTCAAAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAG 480
Query 492 GAGAAGCCTAGGTCTTGAGCTCTACTAC 519
||||||||||||||||||||||||||||
Sbjct 481 GAGAAGCCTAGGTCTTGAGCTCTACTAC 508
> Ahg487072 jgi|Araly1|487072|fgenesh2_kg.6__206__AT5G02960.1
Length=640
Score = 556 bits (301), Expect = 5e-158
Identities = 392/435 (90%), Gaps = 10/435 (2%)
Strand=Plus/Plus
Query 78 AACATGGGTAAGACACGTGGTATGGGAGCTGGTCGCAAGCTTAAGCAG-CTTCGGAT-TA 135
|||||||||||||||||||| ||||||||||| || ||||| ||| || || || || |
Sbjct 116 AACATGGGTAAGACACGTGGAATGGGAGCTGGGCGTAAGCTGAAG-AGACTCCGAATCAA 174
Query 136 CTCAGAGGTGGGCGGACAAGCATTACAAGAAGTCT-AATCGAGGCAACGAGTGGAAGAAG 194
| ||||||||||| |||||||| |||||||||||| | | | || ||||| |||||||||
Sbjct 175 C-CAGAGGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTG-GGAAACGAATGGAAGAAG 232
Query 195 CCTTTTGCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAGGCT 254
||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 233 CCTTTTGCTGGTTCTTCTCACGCTAAAGGAATTGTCCTTGAGAAAATCGGTATTGAGGCT 292
Query 255 AAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAG-TTGATCAAGAATGGTAA 313
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 293 AAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTT-ATCAAGAATGG-AA 350
Query 314 A-AAGATTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATTGAAGAAAATGACG 372
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct 351 AGAAGATTGCTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGATG 410
Query 373 AGGTGTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGAGATATTCCCGGAGTTA 432
|||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |
Sbjct 411 AGGTGTTGATTGCTGGATTTGGTCGTAAGGGTCATGCTGTGGGAGATATTCCCGGAGTCA 470
Query 433 GGTTCAAAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAGG 492
||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 471 GGTTCAAGGTCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGG 530
Query 493 AGAAGCCTAGGTCTT 507
||||||| || ||||
Sbjct 531 AGAAGCCAAGATCTT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24246175212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5