BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09690.1 Length=2051 Score E Sequences producing significant alignments: (Bits) Value Ahg478291 jgi|Araly1|478291|fgenesh2_kg.3__992__AT3G09690.1 2804 0.0 Ahg487073 jgi|Araly1|487073|fgenesh2_kg.6__207__AT5G02970.1 1260 0.0 > Ahg478291 jgi|Araly1|478291|fgenesh2_kg.3__992__AT3G09690.1 Length=1835 Score = 2804 bits (1518), Expect = 0.0 Identities = 1707/1798 (95%), Gaps = 14/1798 (1%) Strand=Plus/Plus Query 84 GAAGAAGATAGATTGGTGACCATGATTATCAACGACGTCTAAGCTGTTTCTGCGTCATTT 143 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 42 GAAGAAGATAGATTGGTGACCATGATGATCAACGACGTCTAAGCTGTTTCTGCGTCATTT 101 Query 144 GGTCTTCTTCTTCTTCGTCTTGTTGCTCTGAAGAGTTG-GTCCTGACTTGGGATTTAGGG 202 |||||||||||||||| |||| |||||||||||||||| || | ||||| ||||||||| Sbjct 102 GGTCTTCTTCTTCTTCTTCTTCTTGCTCTGAAGAGTTGTTTCGT-ACTTGAGATTTAGGG 160 Query 203 ATTTCGTTTTGATAATGGAGGAGATGCGAAGAGGAGTGCCTACGTGGCAAGACGAGTTAG 262 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 161 ATTTCGTTTTGACAATGGAGGAGATGCCAAGAGGAGTGCCTACGTGGCAAGACGAGTTAG 220 Query 263 CTAGTCTCATGGACGGAGGTTTACAATACGACGGATCTCCGATTGATTTGACGGCGGATA 322 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 221 CTAGTCTCATGGACGGAGGTGTACAATACGACGGATCTCCGATTGATCTGACGGCGGATA 280 Query 323 CTGAATCGAGGTCAAAGAGTTCGGGTTTCGAGTCGGGTTCTGGATCCGAATCAGTGGAGA 382 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 281 CTGAATCAAGGTCAAAGAGTTCGGGTTTCGGGTCGGGTTCTGGATCCGAATCAGTGGAGA 340 Query 383 GTTTGAAAGATCAAGTGACGGGGTTTATGAAGTCTTGGGGAGAAATGCTTATGGATCTCG 442 ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 341 GTTTGAAGGATCAAGTGACGGGGTTTATCAAGTCTTGGGGAGAAATGCTTTTGGATCTCG 400 Query 443 CAATCGGATGCAAAGACGTTGTGCAGCAGATGGTGGTGACCGACGACTCTTTCGTTGTAA 502 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 401 CAATCGGATGCAAAGACGTTGTGCAGCAGATGGTGGTGACGGAAGACTCTTTCGTTGTGC 460 Query 503 GGAAGCTCCGGAAACCAGCTGCTAAGGTTTCGAAGAAGCTTAGCTTCCTTAACGAGTACT 562 | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 461 GTAAGCTCCGGAAACCAGCTGCTAAGGTTTCTAAGAAGCTTAGCTTCCTTAACGACTACT 520 Query 563 TGCCTGAGGATCGTGATCCTGTTCATGCTTGGCCTGTGATTTTCTTCGTCTTCCTCCTAG 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 521 TGCCTGAGGATCGTGATCCTGTTCATGCTTGGCCTGTGATTTTCTTCGTCTTCCTCTTAG 580 Query 623 CTCTCACAGCATTGAGTTTTAGTTCAGACCATGATAGATCTGTCCCTTTGTTGAAGAAAA 682 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 581 CTCTCACAGCATTGAGTTTTAGTTCAGACCATGATAGATCTGTCCCAGTGTTGAAGAAAA 640 Query 683 TCCGTCTGCATCCTACTAGTGCAAGCCGTGTACAGCTTCCAGATGGTAGATATTTAGCTT 742 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 641 TCCGTCTGCATCCTACCAGTGCAAGCCGTGTACTGCTTCCAGATGGTAGATATTTAGCTT 700 Query 743 ACCAGGAGCTTGGTGTTTCAGCTGACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTT 802 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 701 ACCAGGAGCTTGGTGTTTCAGCTGACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTT 760 Query 803 TTCTTTCCTCTCGGCTTGCAGGTATACCTGGAGTAAAAGAATCATTGCTCAAGGACTATG 862 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 761 TTCTTTCCTCTCGGCTTGCAGGTATACCCGGAGTAAAAGAATCATTGCTCAAGGACTATG 820 Query 863 GTGTTCGTCTAGTGTCATATGATCTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTC 922 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 GTGTCCGTCTAGTGTCATATGATCTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTC 880 Query 923 GGAACCTTAGCTCATCTGCCTCGGATATGATTGACCTAGCTGCTGCTCTAGGGATTGTTG 982 |||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 881 GGAACCTTAGCTCATCAGCCTCGGATATGATTGACTTAGCTGCTGCTCTCGGGATTGTTG 940 Query 983 ACAAGTTCTGGTTACTCGGCTATTCCAGTGGTAGTGTGCATGCCTGGGCTGCAATGAGAT 1042 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 941 ACAAGTTCTGGTTACTTGGCTATTCCAGTGGTAGTGTGCATGTCTGGGCTGCAATGAGAT 1000 Query 1043 ATTTTCCGGACCAAATAGCTGGAGTTGCCATGGTAGCGCCTATGATAAATCCATATGAGC 1102 | ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1001 ACTTTCCGGACCAGATAGCTGGAGTTGCCATGGTAGCACCTATGATCAATCCATATGAGC 1060 Query 1103 CAAGCATGACAAAGGAAGAGATGGCAAAAACGTGGGAGCAGTGGCAACGAAAGAGGAAAT 1162 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1061 CAAGCATGACAAAGGAAGAGATTGCAAAAACGTGGGAGCAGTGGCAACGAAAGAGGAAGT 1120 Query 1163 TCATGTACTTCTTAGCACGTCGGTGGCCAAGTCTTCTTCCTTTCTCCTACCGTAGGTCCT 1222 |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1121 TCATGTACTTTTTAGCACGTCGGTGGCCAAGTCTTCTTCCTTTCTCCTATCGCAGGTCCT 1180 Query 1223 TTCTCTCTGGTAATCTCGAGCCGCTGGATAAGTGGATGTCAGTGTCATTAGGAGAAAAGG 1282 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1181 TTCTCTCCGGTAATCTCGAGCCGCTGGATAAGTGGATGTCAATGTCATTAGGAGAAAAGG 1240 Query 1283 ACAAACTTGTAACCGCAGATCCAGTTTTTGAAGATCTTTACCAAAGGAATGTGGAGGAGT 1342 |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1241 ACAAACTTGTAATCACAGATCCAGTTTTTGAAGATCTTTACCAAAGGAACGTGGAGGAGT 1300 Query 1343 CTGTACGCCAAGGAACTGCAAAACCATTTGTGGAAGAAGCCGCATTACAGGTATCAAATT 1402 ||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||| Sbjct 1301 CTGTACGGCAAGGAACTGCAAAACCATTTGTCGAAGAAGCCGGGTTACAGGTCTCAAATT 1360 Query 1403 GGGGCTTTAGTCTTCCCGAGTTCCACATGCAGAAGAAGTGTAGAACCAATGGCGTCCTCT 1462 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1361 GGGGCTTTAGTCTTCCTGAATTCCACATGCAGAAGAAGTGTAGAACCAATGGCGTCCTCT 1420 Query 1463 CTTGGCTAATGTCAATGTACAGTGAATCCGAATGTGAACTAATTGGTTTTCGGAAACCTA 1522 |||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| Sbjct 1421 CTTGGCTAATGTCAATGTACAGCGAATCCGAATGTGAACTTATTGGGTTCCGGAAACCCG 1480 Query 1523 TACACATATGGCAGGGTATGGACGACCGAGTCACTCCACCTTCAGTGACAGATTACATTA 1582 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1481 TACACATATGGCAGGGTATGGACGACCGAGTCAGTCCACCTTCAGTGACTGATTACATTA 1540 Query 1583 GTCGAGTCATACCAGAAGCAACGGTACATAGACTCCCAAACGAAGGCCACTTCTCTTACT 1642 | || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1541 GCCGGGTCATACCAGAAGCATCTGTACATAGACTCCCAAACGAAGGCCACTTCTCTTACT 1600 Query 1643 TCTATCTCTGTGATGAGTGCCACACGCAGATCTTTTCGGCCATATTTGGAGAACCAAAGG 1702 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1601 TCTATTTCTGTGATGAGTGCCACAAGCAGATCTTTTCGGCCATATTTGGAGAACCAAGGG 1660 Query 1703 GCCCGGTAGAGTTATTGGAACAAAGAACGGAAACCCATAGACCGGATCAACCAAAGACAG 1762 || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1661 GCTCGGTAGAGTTATCGGAACAAAGAACGGAAACCCATAAACCGGATCAACCAAAGACAG 1720 Query 1763 GTTTATCTGACAGTAGCTCACTACCAAAGAGTAAGTAAA-A----A-A---GAACTATAG 1813 ||||||||||||||||| |||||||| ||||||||||| | | | ||| ||||| Sbjct 1721 GTTTATCTGACAGTAGC--ACTACCAAGGAGTAAGTAAACAGGTTATAAAAGAA-TATAG 1777 Query 1814 GAACACGTTGTTCTTGGTCTTCGTTCCATTATGGAGAAATGTGTAAATAACACCAAGA 1871 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1778 AAACACGTTGTTCTTGGTCTTCGTTCCATCATGGAGAAACGTGTAAATAACACCAAGA 1835 Score = 71.3 bits (38), Expect = 3e-11 Identities = 40/41 (98%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 1 GATCGTCAATGGCGGACTGGAGTAAATTTCTTTGACAATAA 41 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 GATCGTCAATGGCGGACTGGAGTAAATTTCTTTTACAATAA 41 > Ahg487073 jgi|Araly1|487073|fgenesh2_kg.6__207__AT5G02970.1 Length=1954 Score = 1260 bits (682), Expect = 0.0 Identities = 1228/1490 (82%), Gaps = 43/1490 (3%) Strand=Plus/Plus Query 232 AGAGGAGTGCCTACGTGGCAAGACGAGTTAGCTAGTCTCATGGACGGAGGTTTACAATAC 291 |||||||||||||||||||| || |||||||| |||||| | |||| || |||| |||| Sbjct 222 AGAGGAGTGCCTACGTGGCAGGAGGAGTTAGCGAGTCTCGTCGACGCCGGATTACGATAC 281 Query 292 GACGGATCTCCGATTGATTTGACGGCGGATACTGAATCGAGGTCAAAGAGTTCGGGTTTC 351 |||||| ||||||| ||||| ||||||| ||| || ||| || | ||| || || Sbjct 282 GACGGAGCTCCGATCGATTTAACGGCGGCTAC--AA-AGAGATC---GGGTT-TTGTGTC 334 Query 352 -GAGTCGGGTTCTGGATCCGAATCAG-TGGAGAGTTTGAAAGATCAAGTGACGGGGTTTA 409 | | || || ||||||||| | | ||||| |||||||||||||||||||| || | Sbjct 335 GGCGGATGGATCCGGATCCGAA-CCGAAGGAGACATTGAAAGATCAAGTGACGGGATTCA 393 Query 410 TGAAGTCTTGGGGAGAAATGCTTATGGATCTCGC-AATCGGATGCAAAGACGTTGTGCAG 468 |||| ||||||||||| |||||| | || ||||| || |||||||| ||| |||||||| Sbjct 394 TGAAATCTTGGGGAGAGATGCTTCTTGAGCTCGCGAA-AGGATGCAAGGACATTGTGCAG 452 Query 469 CAGATGGTGGTGACCGACGACTCTTTCGTTGTAAGGAAGCTCCGGAAACCAGCTGCTAAG 528 |||| ||||||||| || ||||| ||||| ||| |||||||| ||||||| || ||||| Sbjct 453 CAGACGGTGGTGACTGATGACTCATTCGTAGTACGGAAGCTCGGGAAACCGGCGGCTAAA 512 Query 529 GTTTCGAAGAAGCTTAGCTTCCTTAACGAGTACTTGCCTGAGGATCGTGATCCTG-TTCA 587 || ||||||||||||||||| || ||||||| ||||||||| ||||||||||| | |||| Sbjct 513 GTGTCGAAGAAGCTTAGCTTTCTAAACGAGTTCTTGCCTGAAGATCGTGATCC-GATTCA 571 Query 588 TGCTTGGCCTGTGATTTTCTTCGTCTTCCTCCTAGCTCTCACAGCATTGAGTTTTAGTTC 647 |||||||||||||||||||||||||||||| |||| ||| |||| || || |||||| | Sbjct 572 CGCTTGGCCTGTGATTTTCTTCGTCTTCCTCTTAGCACTCGCAGCTTTAAGCTTTAGTCC 631 Query 648 AGACCATGATAGATCTGTCCCTTTGTTGAAGAAAATCCGTCTGCATCCTACTAGTGCAAG 707 ||| ||||||||| | || | || | |||||| | ||| | |||||||| ||||| Sbjct 632 AGAGCATGATAGACCAGTGACGGTGGTAAAGAAACTGCGTTTACATCCTACAAGTGC-TT 690 Query 708 C-CGTGTACAGCTTCCAGATGGTAGATATTTAGCTTACCAGGAGCTTGGTGTTTCAGCTG 766 | ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| | Sbjct 691 CACGTGTACAGCTTCCAGATGGTAGATATATAGCTTACCAAGAGCTAGGTGTTTCAGCAG 750 Query 767 ACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTTTTCTTTCCTCTCGGCTTGCAGGTA 826 | ||||| ||| ||||| || || | ||||||||||||||||||||||| |||||||| | Sbjct 751 AAAGAGCAAGATACTCTTTAGTTATGCCTCATTCTTTTCTTTCCTCTCGACTTGCAGGCA 810 Query 827 TACCTGGAGTAAAAG-AATCATTGCTCAAGGACTATGGTGTTCGTCTAGTGTCATATGAT 885 |||||||||| ||| |||||||||| ||| |||||||| ||| |||||||||||||| Sbjct 811 TACCTGGAGT-GAAGAAATCATTGCTTGTGGAGTATGGTGTCCGTTTAGTGTCATATGAT 869 Query 886 CTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTCGGAACCTTAGCTCATCTGCCTCG 945 |||||||||||||||||||||||||| ||||| | ||| |||||||||||||| ||||| Sbjct 870 CTTCCAGGGTTTGGAGAGAGTGATCCTCATCGAGGTCGAAACCTTAGCTCATCAGCCTCA 929 Query 946 GATATGATTGACCTAGCTGCTGCTCTAGGGATTGTTGACAAGTTCTGGTTACTCGGCTAT 1005 ||||||||| ||||||| |||||| | || |||| ||| || ||||||||||| ||||| Sbjct 930 GATATGATTAACCTAGCAGCTGCTATCGGAATTGATGAGAAATTCTGGTTACTTGGCTAC 989 Query 1006 TCCAGTGGTAGTGTGCATGCCTGGGCTGCAATGAGATATTTTCCGGACCAAATAGCTGGA 1065 || | ||||||| ||||| | ||||||||||||| |||||| || || |||| || ||| Sbjct 990 TCTACTGGTAGTATGCATACATGGGCTGCAATGAAATATTTCCCTGAGAAAATTGCAGGA 1049 Query 1066 GTTGCCATGGTAGCGCCTATGATAAATCCATATGAGCCAAGCATGACAAAGGAAGAGATG 1125 | ||| ||||| || || |||| || || ||||||||||||||| | |||||||||||| Sbjct 1050 GCTGCAATGGTGGCTCCGGTGATCAACCCCTATGAGCCAAGCATGGCCAAGGAAGAGATG 1109 Query 1126 GCAAAAACGTGGGAGCAGTGGC-AACGAAAGAGGAAATTCATGTACTTCTTAGCACGTCG 1184 | |||||| ||||| || |||| ||| ||||||||||||||||||||| |||||||| || Sbjct 1110 GTAAAAACATGGGACCAATGGCTAAC-AAAGAGGAAATTCATGTACTTTTTAGCACGGCG 1168 Query 1185 GTGGCCAAGTCTTCTTCCTTTCTCCTACCGTAGGTCCTTTCTCTCTGGTAATCTCGAGCC 1244 || || | |||||||||||||| ||||||||| || |||||||||||||| ||||| | Sbjct 1169 GTTTCCTATTCTTCTTCCTTTCTTCTACCGTAGATCTTTTCTCTCTGGTAAACTCGATCA 1228 Query 1245 GCTGGATAAGTGGATGTCAGTGTCATTAGGAGAAAAGGACAAACTTGTAACCGCAGATCC 1304 ||| ||| ||||||||||| ||||||||||||||||||| |||||| ||| | |||||| Sbjct 1229 GCTCGATCAGTGGATGTCATTGTCATTAGGAGAAAAGGATAAACTTCTAATCAAAGATCC 1288 Query 1305 AGTTTTTGAAGA-TCTTTACCAAAGGAATGTGGAGGAGTCTGTACGCCAAGGAA-CTGCA 1362 | ||| |||| | ||||||||||||| |||||||| || || || ||||||| | || Sbjct 1289 AACGTTTCAAGAAT-TTTACCAAAGGAACGTGGAGGAATCCGTCCGTCAAGGAATCA-CA 1346 Query 1363 AAACCATTTGTGGAAGAAGCC--GCATTACAGGTATCAAATTGGGGCTTTAGTCT-TCCC 1419 ||||||||||| |||||| || || || || ||||| ||||||||||||| ||| ||| Sbjct 1347 AAACCATTTGTAGAAGAATCCATGC-TT-CAAGTATCGAATTGGGGCTTTACTCTCTCC- 1403 Query 1420 GAGTTCCACATGCAGAAGAAGTGTAGAACCAATGGCGTCCTCTCTTGGCTAATGTCAATG 1479 || |||| || |||||||| |||| |||||| || ||||| |||||||| ||||||||| Sbjct 1404 GAATTCCGCACACAGAAGAAATGTACAACCAACGGTGTCCTTTCTTGGCTCATGTCAATG 1463 Query 1480 TACAGTGAATCCGAATGTGAACTAATTGGTTTTCGGAAACCTATACACATATGGCAGGGT 1539 ||||||||| | |||||||||||||| || ||||| ||||| || |||||||||||||| Sbjct 1464 TACAGTGAAGCTGAATGTGAACTAATAGGATTTCGAAAACCCATTCACATATGGCAGGGA 1523 Query 1540 ATGGACGACCGAGTCACTCCACCTTCAGTGACAGATTACATTAGTC-GAGTCATACCAGA 1598 ||||| || ||||| | ||||| ||| ||| || ||||| || | || | || || || Sbjct 1524 ATGGAGGATCGAGTGGCGCCACCATCAATGAGTGACTACATCAG-CAGAATGATTCCTGA 1582 Query 1599 AGCAACGGTACATAG-ACTCCCAAACGAAGGCCACTTCTC-TTACTTCTATCTC-TGTGA 1655 |||||| |||||||| | || ||||||||| |||||||| || ||||||| || || || Sbjct 1583 AGCAACTGTACATAGGATTCA-AAACGAAGGTCACTTCTCGTT-CTTCTAT-TCCTGCGA 1639 Query 1656 TGAGTGCCACACG-CAGATCTTT-TCGGCCATATTTGGAGAACC-AAAGG 1702 ||||||||||| | ||||| ||| | || |||| |||||||| ||||| Sbjct 1640 TGAGTGCCACA-GACAGAT-TTTCTATGCTTTATTCGGAGAACCCAAAGG 1687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77132746125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5