BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09690.1
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478291 jgi|Araly1|478291|fgenesh2_kg.3__992__AT3G09690.1 2804 0.0
Ahg487073 jgi|Araly1|487073|fgenesh2_kg.6__207__AT5G02970.1 1260 0.0
> Ahg478291 jgi|Araly1|478291|fgenesh2_kg.3__992__AT3G09690.1
Length=1835
Score = 2804 bits (1518), Expect = 0.0
Identities = 1707/1798 (95%), Gaps = 14/1798 (1%)
Strand=Plus/Plus
Query 84 GAAGAAGATAGATTGGTGACCATGATTATCAACGACGTCTAAGCTGTTTCTGCGTCATTT 143
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 42 GAAGAAGATAGATTGGTGACCATGATGATCAACGACGTCTAAGCTGTTTCTGCGTCATTT 101
Query 144 GGTCTTCTTCTTCTTCGTCTTGTTGCTCTGAAGAGTTG-GTCCTGACTTGGGATTTAGGG 202
|||||||||||||||| |||| |||||||||||||||| || | ||||| |||||||||
Sbjct 102 GGTCTTCTTCTTCTTCTTCTTCTTGCTCTGAAGAGTTGTTTCGT-ACTTGAGATTTAGGG 160
Query 203 ATTTCGTTTTGATAATGGAGGAGATGCGAAGAGGAGTGCCTACGTGGCAAGACGAGTTAG 262
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 161 ATTTCGTTTTGACAATGGAGGAGATGCCAAGAGGAGTGCCTACGTGGCAAGACGAGTTAG 220
Query 263 CTAGTCTCATGGACGGAGGTTTACAATACGACGGATCTCCGATTGATTTGACGGCGGATA 322
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 221 CTAGTCTCATGGACGGAGGTGTACAATACGACGGATCTCCGATTGATCTGACGGCGGATA 280
Query 323 CTGAATCGAGGTCAAAGAGTTCGGGTTTCGAGTCGGGTTCTGGATCCGAATCAGTGGAGA 382
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 281 CTGAATCAAGGTCAAAGAGTTCGGGTTTCGGGTCGGGTTCTGGATCCGAATCAGTGGAGA 340
Query 383 GTTTGAAAGATCAAGTGACGGGGTTTATGAAGTCTTGGGGAGAAATGCTTATGGATCTCG 442
||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 341 GTTTGAAGGATCAAGTGACGGGGTTTATCAAGTCTTGGGGAGAAATGCTTTTGGATCTCG 400
Query 443 CAATCGGATGCAAAGACGTTGTGCAGCAGATGGTGGTGACCGACGACTCTTTCGTTGTAA 502
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 401 CAATCGGATGCAAAGACGTTGTGCAGCAGATGGTGGTGACGGAAGACTCTTTCGTTGTGC 460
Query 503 GGAAGCTCCGGAAACCAGCTGCTAAGGTTTCGAAGAAGCTTAGCTTCCTTAACGAGTACT 562
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 461 GTAAGCTCCGGAAACCAGCTGCTAAGGTTTCTAAGAAGCTTAGCTTCCTTAACGACTACT 520
Query 563 TGCCTGAGGATCGTGATCCTGTTCATGCTTGGCCTGTGATTTTCTTCGTCTTCCTCCTAG 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 521 TGCCTGAGGATCGTGATCCTGTTCATGCTTGGCCTGTGATTTTCTTCGTCTTCCTCTTAG 580
Query 623 CTCTCACAGCATTGAGTTTTAGTTCAGACCATGATAGATCTGTCCCTTTGTTGAAGAAAA 682
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 581 CTCTCACAGCATTGAGTTTTAGTTCAGACCATGATAGATCTGTCCCAGTGTTGAAGAAAA 640
Query 683 TCCGTCTGCATCCTACTAGTGCAAGCCGTGTACAGCTTCCAGATGGTAGATATTTAGCTT 742
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 641 TCCGTCTGCATCCTACCAGTGCAAGCCGTGTACTGCTTCCAGATGGTAGATATTTAGCTT 700
Query 743 ACCAGGAGCTTGGTGTTTCAGCTGACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTT 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 ACCAGGAGCTTGGTGTTTCAGCTGACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTT 760
Query 803 TTCTTTCCTCTCGGCTTGCAGGTATACCTGGAGTAAAAGAATCATTGCTCAAGGACTATG 862
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 761 TTCTTTCCTCTCGGCTTGCAGGTATACCCGGAGTAAAAGAATCATTGCTCAAGGACTATG 820
Query 863 GTGTTCGTCTAGTGTCATATGATCTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTC 922
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GTGTCCGTCTAGTGTCATATGATCTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTC 880
Query 923 GGAACCTTAGCTCATCTGCCTCGGATATGATTGACCTAGCTGCTGCTCTAGGGATTGTTG 982
|||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 881 GGAACCTTAGCTCATCAGCCTCGGATATGATTGACTTAGCTGCTGCTCTCGGGATTGTTG 940
Query 983 ACAAGTTCTGGTTACTCGGCTATTCCAGTGGTAGTGTGCATGCCTGGGCTGCAATGAGAT 1042
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 941 ACAAGTTCTGGTTACTTGGCTATTCCAGTGGTAGTGTGCATGTCTGGGCTGCAATGAGAT 1000
Query 1043 ATTTTCCGGACCAAATAGCTGGAGTTGCCATGGTAGCGCCTATGATAAATCCATATGAGC 1102
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1001 ACTTTCCGGACCAGATAGCTGGAGTTGCCATGGTAGCACCTATGATCAATCCATATGAGC 1060
Query 1103 CAAGCATGACAAAGGAAGAGATGGCAAAAACGTGGGAGCAGTGGCAACGAAAGAGGAAAT 1162
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1061 CAAGCATGACAAAGGAAGAGATTGCAAAAACGTGGGAGCAGTGGCAACGAAAGAGGAAGT 1120
Query 1163 TCATGTACTTCTTAGCACGTCGGTGGCCAAGTCTTCTTCCTTTCTCCTACCGTAGGTCCT 1222
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1121 TCATGTACTTTTTAGCACGTCGGTGGCCAAGTCTTCTTCCTTTCTCCTATCGCAGGTCCT 1180
Query 1223 TTCTCTCTGGTAATCTCGAGCCGCTGGATAAGTGGATGTCAGTGTCATTAGGAGAAAAGG 1282
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1181 TTCTCTCCGGTAATCTCGAGCCGCTGGATAAGTGGATGTCAATGTCATTAGGAGAAAAGG 1240
Query 1283 ACAAACTTGTAACCGCAGATCCAGTTTTTGAAGATCTTTACCAAAGGAATGTGGAGGAGT 1342
|||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1241 ACAAACTTGTAATCACAGATCCAGTTTTTGAAGATCTTTACCAAAGGAACGTGGAGGAGT 1300
Query 1343 CTGTACGCCAAGGAACTGCAAAACCATTTGTGGAAGAAGCCGCATTACAGGTATCAAATT 1402
||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 1301 CTGTACGGCAAGGAACTGCAAAACCATTTGTCGAAGAAGCCGGGTTACAGGTCTCAAATT 1360
Query 1403 GGGGCTTTAGTCTTCCCGAGTTCCACATGCAGAAGAAGTGTAGAACCAATGGCGTCCTCT 1462
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GGGGCTTTAGTCTTCCTGAATTCCACATGCAGAAGAAGTGTAGAACCAATGGCGTCCTCT 1420
Query 1463 CTTGGCTAATGTCAATGTACAGTGAATCCGAATGTGAACTAATTGGTTTTCGGAAACCTA 1522
|||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct 1421 CTTGGCTAATGTCAATGTACAGCGAATCCGAATGTGAACTTATTGGGTTCCGGAAACCCG 1480
Query 1523 TACACATATGGCAGGGTATGGACGACCGAGTCACTCCACCTTCAGTGACAGATTACATTA 1582
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1481 TACACATATGGCAGGGTATGGACGACCGAGTCAGTCCACCTTCAGTGACTGATTACATTA 1540
Query 1583 GTCGAGTCATACCAGAAGCAACGGTACATAGACTCCCAAACGAAGGCCACTTCTCTTACT 1642
| || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1541 GCCGGGTCATACCAGAAGCATCTGTACATAGACTCCCAAACGAAGGCCACTTCTCTTACT 1600
Query 1643 TCTATCTCTGTGATGAGTGCCACACGCAGATCTTTTCGGCCATATTTGGAGAACCAAAGG 1702
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1601 TCTATTTCTGTGATGAGTGCCACAAGCAGATCTTTTCGGCCATATTTGGAGAACCAAGGG 1660
Query 1703 GCCCGGTAGAGTTATTGGAACAAAGAACGGAAACCCATAGACCGGATCAACCAAAGACAG 1762
|| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1661 GCTCGGTAGAGTTATCGGAACAAAGAACGGAAACCCATAAACCGGATCAACCAAAGACAG 1720
Query 1763 GTTTATCTGACAGTAGCTCACTACCAAAGAGTAAGTAAA-A----A-A---GAACTATAG 1813
||||||||||||||||| |||||||| ||||||||||| | | | ||| |||||
Sbjct 1721 GTTTATCTGACAGTAGC--ACTACCAAGGAGTAAGTAAACAGGTTATAAAAGAA-TATAG 1777
Query 1814 GAACACGTTGTTCTTGGTCTTCGTTCCATTATGGAGAAATGTGTAAATAACACCAAGA 1871
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1778 AAACACGTTGTTCTTGGTCTTCGTTCCATCATGGAGAAACGTGTAAATAACACCAAGA 1835
Score = 71.3 bits (38), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 GATCGTCAATGGCGGACTGGAGTAAATTTCTTTGACAATAA 41
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GATCGTCAATGGCGGACTGGAGTAAATTTCTTTTACAATAA 41
> Ahg487073 jgi|Araly1|487073|fgenesh2_kg.6__207__AT5G02970.1
Length=1954
Score = 1260 bits (682), Expect = 0.0
Identities = 1228/1490 (82%), Gaps = 43/1490 (3%)
Strand=Plus/Plus
Query 232 AGAGGAGTGCCTACGTGGCAAGACGAGTTAGCTAGTCTCATGGACGGAGGTTTACAATAC 291
|||||||||||||||||||| || |||||||| |||||| | |||| || |||| ||||
Sbjct 222 AGAGGAGTGCCTACGTGGCAGGAGGAGTTAGCGAGTCTCGTCGACGCCGGATTACGATAC 281
Query 292 GACGGATCTCCGATTGATTTGACGGCGGATACTGAATCGAGGTCAAAGAGTTCGGGTTTC 351
|||||| ||||||| ||||| ||||||| ||| || ||| || | ||| || ||
Sbjct 282 GACGGAGCTCCGATCGATTTAACGGCGGCTAC--AA-AGAGATC---GGGTT-TTGTGTC 334
Query 352 -GAGTCGGGTTCTGGATCCGAATCAG-TGGAGAGTTTGAAAGATCAAGTGACGGGGTTTA 409
| | || || ||||||||| | | ||||| |||||||||||||||||||| || |
Sbjct 335 GGCGGATGGATCCGGATCCGAA-CCGAAGGAGACATTGAAAGATCAAGTGACGGGATTCA 393
Query 410 TGAAGTCTTGGGGAGAAATGCTTATGGATCTCGC-AATCGGATGCAAAGACGTTGTGCAG 468
|||| ||||||||||| |||||| | || ||||| || |||||||| ||| ||||||||
Sbjct 394 TGAAATCTTGGGGAGAGATGCTTCTTGAGCTCGCGAA-AGGATGCAAGGACATTGTGCAG 452
Query 469 CAGATGGTGGTGACCGACGACTCTTTCGTTGTAAGGAAGCTCCGGAAACCAGCTGCTAAG 528
|||| ||||||||| || ||||| ||||| ||| |||||||| ||||||| || |||||
Sbjct 453 CAGACGGTGGTGACTGATGACTCATTCGTAGTACGGAAGCTCGGGAAACCGGCGGCTAAA 512
Query 529 GTTTCGAAGAAGCTTAGCTTCCTTAACGAGTACTTGCCTGAGGATCGTGATCCTG-TTCA 587
|| ||||||||||||||||| || ||||||| ||||||||| ||||||||||| | ||||
Sbjct 513 GTGTCGAAGAAGCTTAGCTTTCTAAACGAGTTCTTGCCTGAAGATCGTGATCC-GATTCA 571
Query 588 TGCTTGGCCTGTGATTTTCTTCGTCTTCCTCCTAGCTCTCACAGCATTGAGTTTTAGTTC 647
|||||||||||||||||||||||||||||| |||| ||| |||| || || |||||| |
Sbjct 572 CGCTTGGCCTGTGATTTTCTTCGTCTTCCTCTTAGCACTCGCAGCTTTAAGCTTTAGTCC 631
Query 648 AGACCATGATAGATCTGTCCCTTTGTTGAAGAAAATCCGTCTGCATCCTACTAGTGCAAG 707
||| ||||||||| | || | || | |||||| | ||| | |||||||| |||||
Sbjct 632 AGAGCATGATAGACCAGTGACGGTGGTAAAGAAACTGCGTTTACATCCTACAAGTGC-TT 690
Query 708 C-CGTGTACAGCTTCCAGATGGTAGATATTTAGCTTACCAGGAGCTTGGTGTTTCAGCTG 766
| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
Sbjct 691 CACGTGTACAGCTTCCAGATGGTAGATATATAGCTTACCAAGAGCTAGGTGTTTCAGCAG 750
Query 767 ACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTTTTCTTTCCTCTCGGCTTGCAGGTA 826
| ||||| ||| ||||| || || | ||||||||||||||||||||||| |||||||| |
Sbjct 751 AAAGAGCAAGATACTCTTTAGTTATGCCTCATTCTTTTCTTTCCTCTCGACTTGCAGGCA 810
Query 827 TACCTGGAGTAAAAG-AATCATTGCTCAAGGACTATGGTGTTCGTCTAGTGTCATATGAT 885
|||||||||| ||| |||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct 811 TACCTGGAGT-GAAGAAATCATTGCTTGTGGAGTATGGTGTCCGTTTAGTGTCATATGAT 869
Query 886 CTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTCGGAACCTTAGCTCATCTGCCTCG 945
|||||||||||||||||||||||||| ||||| | ||| |||||||||||||| |||||
Sbjct 870 CTTCCAGGGTTTGGAGAGAGTGATCCTCATCGAGGTCGAAACCTTAGCTCATCAGCCTCA 929
Query 946 GATATGATTGACCTAGCTGCTGCTCTAGGGATTGTTGACAAGTTCTGGTTACTCGGCTAT 1005
||||||||| ||||||| |||||| | || |||| ||| || ||||||||||| |||||
Sbjct 930 GATATGATTAACCTAGCAGCTGCTATCGGAATTGATGAGAAATTCTGGTTACTTGGCTAC 989
Query 1006 TCCAGTGGTAGTGTGCATGCCTGGGCTGCAATGAGATATTTTCCGGACCAAATAGCTGGA 1065
|| | ||||||| ||||| | ||||||||||||| |||||| || || |||| || |||
Sbjct 990 TCTACTGGTAGTATGCATACATGGGCTGCAATGAAATATTTCCCTGAGAAAATTGCAGGA 1049
Query 1066 GTTGCCATGGTAGCGCCTATGATAAATCCATATGAGCCAAGCATGACAAAGGAAGAGATG 1125
| ||| ||||| || || |||| || || ||||||||||||||| | ||||||||||||
Sbjct 1050 GCTGCAATGGTGGCTCCGGTGATCAACCCCTATGAGCCAAGCATGGCCAAGGAAGAGATG 1109
Query 1126 GCAAAAACGTGGGAGCAGTGGC-AACGAAAGAGGAAATTCATGTACTTCTTAGCACGTCG 1184
| |||||| ||||| || |||| ||| ||||||||||||||||||||| |||||||| ||
Sbjct 1110 GTAAAAACATGGGACCAATGGCTAAC-AAAGAGGAAATTCATGTACTTTTTAGCACGGCG 1168
Query 1185 GTGGCCAAGTCTTCTTCCTTTCTCCTACCGTAGGTCCTTTCTCTCTGGTAATCTCGAGCC 1244
|| || | |||||||||||||| ||||||||| || |||||||||||||| ||||| |
Sbjct 1169 GTTTCCTATTCTTCTTCCTTTCTTCTACCGTAGATCTTTTCTCTCTGGTAAACTCGATCA 1228
Query 1245 GCTGGATAAGTGGATGTCAGTGTCATTAGGAGAAAAGGACAAACTTGTAACCGCAGATCC 1304
||| ||| ||||||||||| ||||||||||||||||||| |||||| ||| | ||||||
Sbjct 1229 GCTCGATCAGTGGATGTCATTGTCATTAGGAGAAAAGGATAAACTTCTAATCAAAGATCC 1288
Query 1305 AGTTTTTGAAGA-TCTTTACCAAAGGAATGTGGAGGAGTCTGTACGCCAAGGAA-CTGCA 1362
| ||| |||| | ||||||||||||| |||||||| || || || ||||||| | ||
Sbjct 1289 AACGTTTCAAGAAT-TTTACCAAAGGAACGTGGAGGAATCCGTCCGTCAAGGAATCA-CA 1346
Query 1363 AAACCATTTGTGGAAGAAGCC--GCATTACAGGTATCAAATTGGGGCTTTAGTCT-TCCC 1419
||||||||||| |||||| || || || || ||||| ||||||||||||| ||| |||
Sbjct 1347 AAACCATTTGTAGAAGAATCCATGC-TT-CAAGTATCGAATTGGGGCTTTACTCTCTCC- 1403
Query 1420 GAGTTCCACATGCAGAAGAAGTGTAGAACCAATGGCGTCCTCTCTTGGCTAATGTCAATG 1479
|| |||| || |||||||| |||| |||||| || ||||| |||||||| |||||||||
Sbjct 1404 GAATTCCGCACACAGAAGAAATGTACAACCAACGGTGTCCTTTCTTGGCTCATGTCAATG 1463
Query 1480 TACAGTGAATCCGAATGTGAACTAATTGGTTTTCGGAAACCTATACACATATGGCAGGGT 1539
||||||||| | |||||||||||||| || ||||| ||||| || ||||||||||||||
Sbjct 1464 TACAGTGAAGCTGAATGTGAACTAATAGGATTTCGAAAACCCATTCACATATGGCAGGGA 1523
Query 1540 ATGGACGACCGAGTCACTCCACCTTCAGTGACAGATTACATTAGTC-GAGTCATACCAGA 1598
||||| || ||||| | ||||| ||| ||| || ||||| || | || | || || ||
Sbjct 1524 ATGGAGGATCGAGTGGCGCCACCATCAATGAGTGACTACATCAG-CAGAATGATTCCTGA 1582
Query 1599 AGCAACGGTACATAG-ACTCCCAAACGAAGGCCACTTCTC-TTACTTCTATCTC-TGTGA 1655
|||||| |||||||| | || ||||||||| |||||||| || ||||||| || || ||
Sbjct 1583 AGCAACTGTACATAGGATTCA-AAACGAAGGTCACTTCTCGTT-CTTCTAT-TCCTGCGA 1639
Query 1656 TGAGTGCCACACG-CAGATCTTT-TCGGCCATATTTGGAGAACC-AAAGG 1702
||||||||||| | ||||| ||| | || |||| |||||||| |||||
Sbjct 1640 TGAGTGCCACA-GACAGAT-TTTCTATGCTTTATTCGGAGAACCCAAAGG 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5