BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09700.1

Length=769
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903840 jgi|Araly1|903840|Al_scaffold_0003_968                     593    5e-169


> Ahg903840 jgi|Araly1|903840|Al_scaffold_0003_968
Length=339

 Score =  593 bits (321),  Expect = 5e-169
 Identities = 333/339 (98%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  139  ATGGTTGCAGCGATAATTGCAGGCgctgctgttgctgctgctgcttatgctgGTAAATAT  198
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTTGCAGCGATACTTGCAGGCGCTGCTGTTGCTGCTGCTGCTTATGCTGGTAAATAT  60

Query  199  GGAATAGAGGCATGGCAAGCGTTTAAGCTGAGACCAGTTAGGCCTAGAATGCGAAAATTC  258
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGATTAGAGGCATGGCAAGCGTTTAAGCTGAGACCAGTTAGGCCTAGAATGCGAAAATTC  120

Query  259  TATGAAGGTGGTTTCCAAGCTACTATGAATCGAAGAGAAGCTGCTCTAATTCTCGGTGTT  318
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  TATGAAGGTGGTTTCCAAGCTACTATGAATCGGAGAGAAGCTGCTCTAATTCTCGGTGTT  180

Query  319  AGGGAGAGTGTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGTAGAGTGATGGTGGCTAAT  378
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  181  AGGGAGAGTGTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTGGCAAAT  240

Query  379  CATCCAGATGCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATG  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CATCCAGATGCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATG  300

Query  439  ATGCTTGGAAAAACCAAGAACTCTGGTTCTGCGTTTTGA  477
            |||||||| ||||||||||||||||||||||||||||||
Sbjct  301  ATGCTTGGCAAAACCAAGAACTCTGGTTCTGCGTTTTGA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28363450248


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5