BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09710.2
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903841 jgi|Araly1|903841|Al_scaffold_0003_969 1072 0.0
Ahg487077 jgi|Araly1|487077|fgenesh2_kg.6__211__AT5G03040.1 287 2e-76
> Ahg903841 jgi|Araly1|903841|Al_scaffold_0003_969
Length=1374
Score = 1072 bits (580), Expect = 0.0
Identities = 719/786 (91%), Gaps = 9/786 (1%)
Strand=Plus/Plus
Query 934 AATGGGGGTAATTGGAACTACAGCAATCAGTCAAAGGAACAAGTTGAAGCAGGTATGTTG 993
|||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||||||
Sbjct 589 AATGGGGGTAATTGGAACGACAGCAATCAGTCGAAGGAACAGGTTGAAGCGGGTATGTTG 648
Query 994 CACAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATTCACACATCAG 1053
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 649 CACAAGTACGAGGCGACAATGAGAAGGGAAAGGGCATTGGCATATGCATTCACACATCAG 708
Query 1054 CAAAACTTGAAGAGCTTCTCGAAAACTGCAAATCCGATGTTCATGGATCCTAGCAACCCG 1113
||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 709 CAAAATTTGAAGAGCAACTCGAAAACTGCAAATCCGATGTTCATGGATCCCAGCAACCCG 768
Query 1114 ACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCATGGGAGAGTTCAGAG 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCATGGGAGAGTTCAGAG 828
Query 1174 AAAGAAC-AAA-AC-A-C--C-AC--CAACAACGACAACTCCTCGGTTAAGAACTCGACT 1224
||||||| ||| || | | | || ||||||||| |||||||| || ||||||||||||
Sbjct 829 AAAGAACAAAACACAACCAACAACAACAACAACGAAAACTCCTCAGTCAAGAACTCGACT 888
Query 1225 AACCGTAATTCCCAAGGAGGAGAAACAGCAAAATCTTCAAACCGCAACAAACTCAATAGC 1284
|| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 889 AATCGTAATTCCCATGGAGGAGAAACCGCAAAATCTTTGAACCGCAACAAACTCAATATC 948
Query 1285 TCGACTAAACCCAATACCCCATCAGCATCATCCACAGCCACCAGAAACCCGAGAAAGAAG 1344
|||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 949 TCGACTCAATCCAATACCCCATCATCATCATCCACTGCCACCAGAAACCCGAGAAAGAAG 1008
Query 1345 CGGCCCATCCCATCGTCCATAAAATCCAAAAGCAGTGATGATGAGGCCAAGAGCTCGGAG 1404
|||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 AGGCCAATTCCATCGCCCATAAAATCCAAAACCAGTGATGATGAGGCCAAGAGCTCGGAG 1068
Query 1405 AGGAACCGTAGGCCCAGCATTGCTAGGCCATCGGTTAGTGATGACGAGACCCTGAGTAGC 1464
| ||||||||||| ||||| ||| ||| |||| |||||||||||||||||||||| ||||
Sbjct 1069 AAGAACCGTAGGCACAGCACTGCAAGGTCATCAGTTAGTGATGACGAGACCCTGACTAGC 1128
Query 1465 TCAACTGCTAGGCGTAGTAGCAATCTGATTCCTACAACAAAATCAGCACGAGGCAAGCCC 1524
||||| |||| ||||||| | |||||||||| || |||||| ||| |||||||||||||
Sbjct 1129 TCAACAGCTAAACGTAGTAACCATCTGATTCCCACCACAAAACCAGTACGAGGCAAGCCC 1188
Query 1525 AAGTCTCAAACCTCATCACGAGTAGCGGTGACCACATCCACAACAGAGGAAAGCAGTATA 1584
||| | || | ||||||||| | ||||||||||||| ||||||| ||||||| |||| ||
Sbjct 1189 AAGCCCCAGAGCTCATCACGTGCAGCGGTGACCACAACCACAACGGAGGAAAACAGTGTA 1248
Query 1585 TTACCGGAGAAAGCACCAGCAAAGAAACGGCTCTCCACCTCGGCTTCACCTGCACCCAAA 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TTACCGGAGAAAGCACCAGCAAAGAAACGGCTCTCCACCTCGGCTTCACCTGCACCCAAA 1308
Query 1645 CCCAGACGATCCTCCGCCCCGCCAAAGGTGGAAAAAGGCGTTCTCAAGGCAGAGAGAACG 1704
|||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 1309 CCCAGACGATCCTCAGCCCCACCAAAGGTGGAAAAAGGCGCTCTCAAAGCAGAGAGAACG 1368
Query 1705 CCGTGA 1710
||||||
Sbjct 1369 CCGTGA 1374
Score = 915 bits (495), Expect = 0.0
Identities = 558/589 (95%), Gaps = 2/589 (0%)
Strand=Plus/Plus
Query 304 ATGGTTAAAAAAGCGAAATGGCTGAAAAACGTTAAAAAGGCTTTTAGCCCAGATTCAAAG 363
||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTTAAAAAGGCGAAATGGCTCAAGAACGTTAAGAAGGCTTTTAGCCCAGATTCAAAG 60
Query 364 AAGTTGAAACACGAATCTGTTGAGTGTCAAGATAGTGTAATCTCTTACCCTGTCTTGATA 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AAGTTGAAACATGAATCTGTTGAGTGTCAAGATAGTGTAATCTCTTACCCTGTATTGATA 120
Query 424 GCCACATCCAGAAGTTCTTCTCCTCAGTTTGAAGTTAGAGTTGATGAGGTCAACTATGAA 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCACATCCAGAAGTTCTCCTCCTCAGTTTGAAGTTAGAGTTGATGAGGTCAACTATGAA 180
Query 484 CAGAAGAAGAATCTGTATCCTCCTTCTTCAGATTCTGTGACTGCTACTGTTGCACATGTT 543
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 181 CAGAAGAAGAATCTGTGTCCTCCTTCTTCAGTTTCTGTGACTCCTACTGTTGCACATGTT 240
Query 544 CTTGTAGATTCTCCTCCATCTTCTCCTGAATCTGTCCATCAAGCTATAGTTGTTAATAGA 603
||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 241 CTTGTAGATTCACCTCCATCTTCTCCTGAATCTGTTCATCAAGCTATAGTTGATGATAGG 300
Query 604 TTTGCAGGCAAGTCAAAGGAAGAAGCAGCTGCCATCTTAATCCAGTCTACGTTTAGGGGC 663
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 301 TTTGCAGGCAAGTCAAAGGAAGATGCAGCTGCCATCTTAATTCAGTCTACGTTTAGGGGC 360
Query 664 CATTTGGCAAGAAGAGAATCGCAG-GTGATGAGGGGGCAGGAAAGACTTAAGTTACTGAT 722
||||| | ||| || | || ||||||||||||||||||||||||||||||||
Sbjct 361 AATTTGTCTTTAAGTCTTTCTT-GTGTAATGAGGGGGCAGGAAAGACTTAAGTTACTGAT 419
Query 723 GGAAGGATCGGTTGTACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCTCTC 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAAGGATCGGTTGTACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCTCTC 479
Query 783 TCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCG 539
Query 843 ACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAG 891
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAG 588
> Ahg487077 jgi|Araly1|487077|fgenesh2_kg.6__211__AT5G03040.1
Length=1931
Score = 287 bits (155), Expect = 2e-76
Identities = 240/281 (85%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 602 GATTTGCAGGCAAGTCAAAGGAAGAAGCAGCTGCCATCTTAATCCAGTCTACGTTTAGGG 661
||||||| || ||||| || |||||||| ||||| ||||| || || ||| ||||| |
Sbjct 577 GATTTGCGGGAAAGTCGAATGAAGAAGCCGCTGCTATCTTGATTCAAACTATTTTTAGAG 636
Query 662 GCCATTTGGCAAGAAGAG-AATCGCAGGTGATGAGGGGGCAGGAAAGACTTAAGTTACTG 720
|| ||||||||||||||| | | || || |||||||| || || ||||||||| ||
Sbjct 637 GCTATTTGGCAAGAAGAGCACT-GCGGGCAATGAGGGGTTTGGTCAGGCTTAAGTTATTG 695
Query 721 ATGGAAGGATCGGTTG-TACAACGGCAAGCTGCAATTACTCTT-AAATGTATGCAGACGC 778
|||||||| || |||| || ||||||||||||||| |||| || |||||||||||||| |
Sbjct 696 ATGGAAGGCTCTGTTGTTA-AACGGCAAGCTGCAAATACT-TTAAAATGTATGCAGACTC 753
Query 779 TCTCTCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGG 838
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 754 TCTCTCGTGTACAGTCACAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGG 813
Query 839 CTCGACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTA 879
|||| || || ||||| ||||||||||||||||||||||||
Sbjct 814 CTCGCCAGAAACAACTCCTTCAGAAGCATGCCAAAGAGCTA 854
Score = 281 bits (152), Expect = 1e-74
Identities = 259/308 (84%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 937 GGGGGTAATTGGAACT-ACAGCAATCAGTCAAAGGA-ACAAGTTGAAGCAGGTATGTTGC 994
|||| ||| ||||| | | |||| ||| |||||||| | |||||||||| | || ||||
Sbjct 870 GGGGATAACTGGAA-TGATAGCATTCAATCAAAGGAGA-AAGTTGAAGC--GAAT-TTGC 924
Query 995 --A-CAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATTCACACATC 1051
| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 925 TAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATACTCTCATC 984
Query 1052 AGCAAAACTTGAAGAGCTTCTCGAAAACTGCAAATCCGATGTTCATGGATCCTAGCAACC 1111
||||||||| ||||| | ||| ||| ||| || ||||||||||||||||| |||||||
Sbjct 985 AGCAAAACTGGAAGAACAACTCTAAATCTGGTAACCCGATGTTCATGGATCCAAGCAACC 1044
Query 1112 CGACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCA-TGGGAGAGTTCA 1170
|||| ||||||||||||||||||||||| ||||||||||| |||||| | | |||||||
Sbjct 1045 CGACATGGGGTTGGAGCTGGTTAGAGAGATGGATGGCTGGTCGGCCACTAG-AGAGTTCC 1103
Query 1171 GAGAAAGAACAAAACACCA-C--CAACAACGACAA--CT-CCTCGGTTAAGAACTCGACT 1224
|||||||||||||||| || | |||||||||||| || |||||| ||| ||| | |
Sbjct 1104 GAGAAAGAACAAAACAGCAACAGCAACAACGACAATGCTGCCTCGGCCAAGGGCTCTATT 1163
Query 1225 AACCGTAA 1232
||||||||
Sbjct 1164 AACCGTAA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72866638685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5