BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09710.2 Length=1939 Score E Sequences producing significant alignments: (Bits) Value Ahg903841 jgi|Araly1|903841|Al_scaffold_0003_969 1072 0.0 Ahg487077 jgi|Araly1|487077|fgenesh2_kg.6__211__AT5G03040.1 287 2e-76 > Ahg903841 jgi|Araly1|903841|Al_scaffold_0003_969 Length=1374 Score = 1072 bits (580), Expect = 0.0 Identities = 719/786 (91%), Gaps = 9/786 (1%) Strand=Plus/Plus Query 934 AATGGGGGTAATTGGAACTACAGCAATCAGTCAAAGGAACAAGTTGAAGCAGGTATGTTG 993 |||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||||||| Sbjct 589 AATGGGGGTAATTGGAACGACAGCAATCAGTCGAAGGAACAGGTTGAAGCGGGTATGTTG 648 Query 994 CACAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATTCACACATCAG 1053 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 649 CACAAGTACGAGGCGACAATGAGAAGGGAAAGGGCATTGGCATATGCATTCACACATCAG 708 Query 1054 CAAAACTTGAAGAGCTTCTCGAAAACTGCAAATCCGATGTTCATGGATCCTAGCAACCCG 1113 ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 709 CAAAATTTGAAGAGCAACTCGAAAACTGCAAATCCGATGTTCATGGATCCCAGCAACCCG 768 Query 1114 ACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCATGGGAGAGTTCAGAG 1173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 ACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCATGGGAGAGTTCAGAG 828 Query 1174 AAAGAAC-AAA-AC-A-C--C-AC--CAACAACGACAACTCCTCGGTTAAGAACTCGACT 1224 ||||||| ||| || | | | || ||||||||| |||||||| || |||||||||||| Sbjct 829 AAAGAACAAAACACAACCAACAACAACAACAACGAAAACTCCTCAGTCAAGAACTCGACT 888 Query 1225 AACCGTAATTCCCAAGGAGGAGAAACAGCAAAATCTTCAAACCGCAACAAACTCAATAGC 1284 || ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| | Sbjct 889 AATCGTAATTCCCATGGAGGAGAAACCGCAAAATCTTTGAACCGCAACAAACTCAATATC 948 Query 1285 TCGACTAAACCCAATACCCCATCAGCATCATCCACAGCCACCAGAAACCCGAGAAAGAAG 1344 |||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 949 TCGACTCAATCCAATACCCCATCATCATCATCCACTGCCACCAGAAACCCGAGAAAGAAG 1008 Query 1345 CGGCCCATCCCATCGTCCATAAAATCCAAAAGCAGTGATGATGAGGCCAAGAGCTCGGAG 1404 |||| || |||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1009 AGGCCAATTCCATCGCCCATAAAATCCAAAACCAGTGATGATGAGGCCAAGAGCTCGGAG 1068 Query 1405 AGGAACCGTAGGCCCAGCATTGCTAGGCCATCGGTTAGTGATGACGAGACCCTGAGTAGC 1464 | ||||||||||| ||||| ||| ||| |||| |||||||||||||||||||||| |||| Sbjct 1069 AAGAACCGTAGGCACAGCACTGCAAGGTCATCAGTTAGTGATGACGAGACCCTGACTAGC 1128 Query 1465 TCAACTGCTAGGCGTAGTAGCAATCTGATTCCTACAACAAAATCAGCACGAGGCAAGCCC 1524 ||||| |||| ||||||| | |||||||||| || |||||| ||| ||||||||||||| Sbjct 1129 TCAACAGCTAAACGTAGTAACCATCTGATTCCCACCACAAAACCAGTACGAGGCAAGCCC 1188 Query 1525 AAGTCTCAAACCTCATCACGAGTAGCGGTGACCACATCCACAACAGAGGAAAGCAGTATA 1584 ||| | || | ||||||||| | ||||||||||||| ||||||| ||||||| |||| || Sbjct 1189 AAGCCCCAGAGCTCATCACGTGCAGCGGTGACCACAACCACAACGGAGGAAAACAGTGTA 1248 Query 1585 TTACCGGAGAAAGCACCAGCAAAGAAACGGCTCTCCACCTCGGCTTCACCTGCACCCAAA 1644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 TTACCGGAGAAAGCACCAGCAAAGAAACGGCTCTCCACCTCGGCTTCACCTGCACCCAAA 1308 Query 1645 CCCAGACGATCCTCCGCCCCGCCAAAGGTGGAAAAAGGCGTTCTCAAGGCAGAGAGAACG 1704 |||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||| Sbjct 1309 CCCAGACGATCCTCAGCCCCACCAAAGGTGGAAAAAGGCGCTCTCAAAGCAGAGAGAACG 1368 Query 1705 CCGTGA 1710 |||||| Sbjct 1369 CCGTGA 1374 Score = 915 bits (495), Expect = 0.0 Identities = 558/589 (95%), Gaps = 2/589 (0%) Strand=Plus/Plus Query 304 ATGGTTAAAAAAGCGAAATGGCTGAAAAACGTTAAAAAGGCTTTTAGCCCAGATTCAAAG 363 ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 1 ATGGTTAAAAAGGCGAAATGGCTCAAGAACGTTAAGAAGGCTTTTAGCCCAGATTCAAAG 60 Query 364 AAGTTGAAACACGAATCTGTTGAGTGTCAAGATAGTGTAATCTCTTACCCTGTCTTGATA 423 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 AAGTTGAAACATGAATCTGTTGAGTGTCAAGATAGTGTAATCTCTTACCCTGTATTGATA 120 Query 424 GCCACATCCAGAAGTTCTTCTCCTCAGTTTGAAGTTAGAGTTGATGAGGTCAACTATGAA 483 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCCACATCCAGAAGTTCTCCTCCTCAGTTTGAAGTTAGAGTTGATGAGGTCAACTATGAA 180 Query 484 CAGAAGAAGAATCTGTATCCTCCTTCTTCAGATTCTGTGACTGCTACTGTTGCACATGTT 543 |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| Sbjct 181 CAGAAGAAGAATCTGTGTCCTCCTTCTTCAGTTTCTGTGACTCCTACTGTTGCACATGTT 240 Query 544 CTTGTAGATTCTCCTCCATCTTCTCCTGAATCTGTCCATCAAGCTATAGTTGTTAATAGA 603 ||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||| Sbjct 241 CTTGTAGATTCACCTCCATCTTCTCCTGAATCTGTTCATCAAGCTATAGTTGATGATAGG 300 Query 604 TTTGCAGGCAAGTCAAAGGAAGAAGCAGCTGCCATCTTAATCCAGTCTACGTTTAGGGGC 663 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 301 TTTGCAGGCAAGTCAAAGGAAGATGCAGCTGCCATCTTAATTCAGTCTACGTTTAGGGGC 360 Query 664 CATTTGGCAAGAAGAGAATCGCAG-GTGATGAGGGGGCAGGAAAGACTTAAGTTACTGAT 722 ||||| | ||| || | || |||||||||||||||||||||||||||||||| Sbjct 361 AATTTGTCTTTAAGTCTTTCTT-GTGTAATGAGGGGGCAGGAAAGACTTAAGTTACTGAT 419 Query 723 GGAAGGATCGGTTGTACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCTCTC 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGAAGGATCGGTTGTACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCTCTC 479 Query 783 TCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCG 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCG 539 Query 843 ACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAG 891 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAG 588 > Ahg487077 jgi|Araly1|487077|fgenesh2_kg.6__211__AT5G03040.1 Length=1931 Score = 287 bits (155), Expect = 2e-76 Identities = 240/281 (85%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 602 GATTTGCAGGCAAGTCAAAGGAAGAAGCAGCTGCCATCTTAATCCAGTCTACGTTTAGGG 661 ||||||| || ||||| || |||||||| ||||| ||||| || || ||| ||||| | Sbjct 577 GATTTGCGGGAAAGTCGAATGAAGAAGCCGCTGCTATCTTGATTCAAACTATTTTTAGAG 636 Query 662 GCCATTTGGCAAGAAGAG-AATCGCAGGTGATGAGGGGGCAGGAAAGACTTAAGTTACTG 720 || ||||||||||||||| | | || || |||||||| || || ||||||||| || Sbjct 637 GCTATTTGGCAAGAAGAGCACT-GCGGGCAATGAGGGGTTTGGTCAGGCTTAAGTTATTG 695 Query 721 ATGGAAGGATCGGTTG-TACAACGGCAAGCTGCAATTACTCTT-AAATGTATGCAGACGC 778 |||||||| || |||| || ||||||||||||||| |||| || |||||||||||||| | Sbjct 696 ATGGAAGGCTCTGTTGTTA-AACGGCAAGCTGCAAATACT-TTAAAATGTATGCAGACTC 753 Query 779 TCTCTCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGG 838 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 754 TCTCTCGTGTACAGTCACAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGG 813 Query 839 CTCGACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTA 879 |||| || || ||||| |||||||||||||||||||||||| Sbjct 814 CTCGCCAGAAACAACTCCTTCAGAAGCATGCCAAAGAGCTA 854 Score = 281 bits (152), Expect = 1e-74 Identities = 259/308 (84%), Gaps = 18/308 (6%) Strand=Plus/Plus Query 937 GGGGGTAATTGGAACT-ACAGCAATCAGTCAAAGGA-ACAAGTTGAAGCAGGTATGTTGC 994 |||| ||| ||||| | | |||| ||| |||||||| | |||||||||| | || |||| Sbjct 870 GGGGATAACTGGAA-TGATAGCATTCAATCAAAGGAGA-AAGTTGAAGC--GAAT-TTGC 924 Query 995 --A-CAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATTCACACATC 1051 | ||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 925 TAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATACTCTCATC 984 Query 1052 AGCAAAACTTGAAGAGCTTCTCGAAAACTGCAAATCCGATGTTCATGGATCCTAGCAACC 1111 ||||||||| ||||| | ||| ||| ||| || ||||||||||||||||| ||||||| Sbjct 985 AGCAAAACTGGAAGAACAACTCTAAATCTGGTAACCCGATGTTCATGGATCCAAGCAACC 1044 Query 1112 CGACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCA-TGGGAGAGTTCA 1170 |||| ||||||||||||||||||||||| ||||||||||| |||||| | | ||||||| Sbjct 1045 CGACATGGGGTTGGAGCTGGTTAGAGAGATGGATGGCTGGTCGGCCACTAG-AGAGTTCC 1103 Query 1171 GAGAAAGAACAAAACACCA-C--CAACAACGACAA--CT-CCTCGGTTAAGAACTCGACT 1224 |||||||||||||||| || | |||||||||||| || |||||| ||| ||| | | Sbjct 1104 GAGAAAGAACAAAACAGCAACAGCAACAACGACAATGCTGCCTCGGCCAAGGGCTCTATT 1163 Query 1225 AACCGTAA 1232 |||||||| Sbjct 1164 AACCGTAA 1171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72866638685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5