BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09720.1
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478294 jgi|Araly1|478294|fgenesh2_kg.3__995__AT3G09720.1 2878 0.0
> Ahg478294 jgi|Araly1|478294|fgenesh2_kg.3__995__AT3G09720.1
Length=1996
Score = 2878 bits (1558), Expect = 0.0
Identities = 1840/1968 (93%), Gaps = 52/1968 (3%)
Strand=Plus/Plus
Query 103 TTGTTACCATTATTGCTGCCTTTTCCTC-TCCTCCGGAAACGCTCTCTTTCTCTATTTAG 161
||||||| |||||||||||||||||||| ||| || |||||||||||| ||||||| |
Sbjct 58 TTGTTACTATTATTGCTGCCTTTTCCTCTTCC-CCAGAAACGCTCTCTGTCTCTATCT-- 114
Query 162 ATGGAGAAAAGCTCATATTTTCTGTTTGGTGGAACAAACTTCAATAAGAAGAAGTTTGCT 221
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATGGAGAAAAGCTCCTATTTTTTGTTTGGTGGAACAAACTTCAATAAGAAGAAGTTTGCT 174
Query 222 CCTGATTTTGCTAAATTCAAGAATTCTACGGAGGATGATGATTCCAATAAGAAAGTGAAC 281
|| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 175 CCAGATTTTGCTAAGTTTAAGAATTGTACGGAGGATGATGATTCCAATAAGAAAGTGAAC 234
Query 282 TTCTTTGTGGAAGAAGAAGAGGACACTGAACAGCCGGAGGCGGAGAAAGTTATTGTGTCC 341
|||||||| | |||||||||||||||||| || | ||| |||||||||||||||||||
Sbjct 235 TTCTTTGT-G--GAAGAAGAGGACACTGAAGAG-C--AGGAGGAGAAAGTTATTGTGTCC 288
Query 342 TCTAAGAAGAGGAAACGAAGATCTTCTAATTCTGTGCCAGTTGAAGGATTCGATGTGTTC 401
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 289 TCTAAGAAGAGGAAACGAAGATCTTCTAATTCCGTGCCAGTTGAAGGATTTGATGTGTTC 348
Query 402 AAGAGCTCAAAGAAGGCACGTGCTAAAGGTAAAGCAGAAGAA-CAAATCACAAAGAATGA 460
||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 349 AAGAGCTCAAAGAAGGCACTTGCTAAAGGTAAAGCAGAAGAAGGAAA-CACAAAGAATGA 407
Query 461 GATTGTAG-AGAATCCCAAGAAGGAACTTAATCGTCAAATGGAGCGAGATGCTTTGTCGA 519
||| ||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 408 TATTTTAGAAG-ATCCCAAGAAGGAACTTAATCGTCAAATAGAGCGAGATGCTTTGTCGA 466
Query 520 GGAAACAGTACAGCATTCATGTTTCCGGTAACAATATTCCACCGCCGCTTAAAAG-TTTC 578
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 467 GGAAACAGTACAACATTCATGTTTCCGGTAACAATATTCCACCTCCGCTTAAAAGCTTT- 525
Query 579 GCAGAGTTGTCATCCAGGTATGGCTGTGAAGGATACATATTACGCAATTTGGCTGAACTA 638
|||||||| ||||| |||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 526 GCAGAGTTATCATCAAGGTATGGCTGTAAAGAATATATATTACGCAATTTGGCTGAACTA 585
Query 639 GGATTTAAAGAGCCTACCCCAATCCAAAGACAGGCTATTCCAATTCTCCTATCGGGTCGT 698
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 586 GGATTTAAAGAGCCTACCCCCATCCAAAGACAGGCTATTCCAGTTCTCCTATCGGGTCGT 645
Query 699 GAATGCTTTGCCTGTGCTCCGACTGGGTCAGGAAAAACCTTTGCTTTTATTTGTCCCATG 758
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 646 GAATGCTTTGCCTGTGCTCCGACTGGGTCAGGAAAAACCGTTGCTTTTATTTGTCCCATG 705
Query 759 CTTATAAAACTCAAGCGCCCTTCAACTGATGGAATAAGAGCTGTTATCCTTTCTCCTGCT 818
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 706 CTTATAAAACTCAAGCGCCCTTCAACAGATGGAATAAGAGCAGTTATCCTTTCTCCTGCT 765
Query 819 CGGGAACTGGCTGCCCAAACAGCTAGAGAAGGAAAGAAACTTATTAAAGGAAGCAATTTC 878
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 766 CGGGAACTGGCTGCCCAAACAGCTAGAGAAGGAAAGAAACTTATTAAAGGAAGCAAGTTC 825
Query 879 CACATTAGATTGATGACTAAACCCCTTGTCAAAACAGCTGACTTCTCAAAGCTGTGGTGT 938
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 826 CACATTAGATTGATGACTAAACCTCTTGTCAAAACAGCTGACTTCTCAAAGCTGCGGTGT 885
Query 939 GATGTTCTCATATCAACGCCGATGCGGTTGAAAAGAGCAATCAAGGCTAAAAAGATTGAC 998
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 886 GATGTTCTCATATCAACGCCGATGCGGCTGAAAAGAGCAATCAAGGCTAAAAAGATTGAC 945
Query 999 TTAAGCAAGGTCGAGTACCTTGTCCTTGATGAATCTGACAAGCTGTTTGAGCAGAGCTTG 1058
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TTAAGCAAGGTTGAGTACCTTGTCCTTGATGAATCTGACAAGCTGTTTGAGCAGAGCTTG 1005
Query 1059 TTAAAGCAGATAGATTGTGTGGTTAAGGCTTGTTCAAATCCTTCGATCATACGTTCATTG 1118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1006 TTAAAGCAGATAGATTGTGTGGTTAAGGCTTGTTCAAACCCTTCGATCATACGTTCATTG 1065
Query 1119 TTCAGTGCTACTTTGCCCGATTCTGTTGAAGAACTTGCACGTTCCATAATGCATGATGCT 1178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1066 TTCAGTGCTACTTTGCCCGATTCTGTTGAGGAACTTGCACGTTCCATAATGCATGATGCT 1125
Query 1179 GTTCGTGTTATCATTGGCCGAAAAAACACAGCATCTGAAACCGTCAAGCAAAAGCTGGTT 1238
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1126 GTTCGTGTGATCATTGGCCGAAAGAACACAGCGTCTGAAACCGTCAAGCAAAAGCTGGTT 1185
Query 1239 TTTGCTGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGCTTTGCAGAGAGTCTG 1298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTTGCTGGAACTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGCTTTGCAGAGAGTCTG 1245
Query 1299 AATCCACCGGTACTGATCTTTGTACAAAGCAAAGAACGAGCAAAAGAACTCTATGATGAA 1358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1246 AATCCACCGGTACTGATCTTTGTACAAAGCAAAGAACGAGCAAAGGAACTCTATGATGAA 1305
Query 1359 CTGAAATGTGAAAACATCAGAGCCGGAGTCATCCATTCCGATCTCCCTCCGGGAGAGCGG 1418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1306 CTGAAATGTGAAAACATCAGAGCCGGGGTCATCCATTCCGATCTCCCTCCGGGAGAGCGG 1365
Query 1419 GAAAATGCAGTTGATCAATTCAGAGCGGGAGAAAAATGGGTTTTGATAGCCACTGATGTG 1478
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1366 GAAAACGCAGTTGATCAATTCAGAGCGGGCGAAAAATGGGTTTTGATAGCTACTGATGTG 1425
Query 1479 ATTGCCAGAGGTATGGATTTCAAAGGCATCAACTGCGTGATAAACTATGATTTCCCGGAT 1538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ATTGCTAGAGGTATGGATTTCAAAGGCATCAACTGCGTGATAAACTATGATTTCCCGGAT 1485
Query 1539 TCAGCTTCTGCATACATCCACAGGATTGGACGGTCTGGGAGAGCGGGAAGGAGCGGAGAA 1598
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1486 TCAGCTTCTGCATACATCCACAGGATTGGTCGGTCTGGGAGAGCGGGAAGGAGCGGAGAA 1545
Query 1599 GCGATAACTTTCTACACGGAACAAGATGTGCCTTTCCTAAGGAACATAGCCAACACAATG 1658
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||
Sbjct 1546 GCGATAACTTTCTACACGGAACAGGATGTACCTTTCCTTAGGAACATAGCCAACATGATG 1605
Query 1659 ATGTCATCAGGCTGTGAGGTTCCATCGTGGATCATGTCTTTGAAGAAGAAGAAATGGAGG 1718
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1606 ATGTCATCAGGCTGTGAGGTTCCGTCGTGGATCATGTCTTTGAAGAAGAAGAAGTGGAGG 1665
Query 1719 AAGCATAGGCCGAGACGTGATTCTATATCTACTAAACCAAAAGCCGATAAAAACGATACA 1778
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1666 AAGCATAGGCCGAGACGTGATTCTATATCTACTCAACCAAAAGCCGATAAAAACGATAAA 1725
Query 1779 GATGAGTAACCTCAAATTTTGTCTTTTATATT-TCTTGTTGTTGTTACATTGATGAATTA 1837
|||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1726 GATGTGTAACTTCAAATTTTGTGTTTTCC-TTATCTTGTTGTTGTTACATTGATGAATTA 1784
Query 1838 GTCTTGGTCTTTTGGATCCAAAACACTTTACACTGGCTAGAATCGGGAATCTAGTAGAAT 1897
|||||||||||| ||| ||||| ||||||||| | | | | || |||| | | |
Sbjct 1785 GTCTTGGTCTTTCGGACCCAAA-CACTTTACAGTA--T-G--T-GG----CTAG-A-A-T 1830
Query 1898 CGAACTTAGTTGTCACTTGGATCGTACTACGAAATACATAT--GTAACTCAAACCTAGTT 1955
||||| |||||||||||||||||||||||| |||||||||| ||| || |||| |||||
Sbjct 1831 CGAACGTAGTTGTCACTTGGATCGTACTACAAAATACATATATGTA-CTAAAAC-TAGTT 1888
Query 1956 ACTATTCGATTGTGAGACTTCC-GGTTTTTCAT---G-T-----CG--GATTCAATGATT 2003
||||| ||||| ||||||||| |||||||||| | | | ||||||||||||
Sbjct 1889 ACTATCCGATTTTGAGACTTCAAGGTTTTTCATTTTGATGTATTCTCAGATTCAATGATT 1948
Query 2004 TCTTAAGATGCAT----TATACCATAAGTTTTGGTTTGGTATAACTTT 2047
||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct 1949 TCTTAAGATACATACAATATACCATAAGTTTTGGTTTGGTATAATTTT 1996
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 42 TCTTCTCGGTATCTATTCGCCGTCGTCAGTGTCATCGCCGGCGTTT 87
||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 14 TCTGCTCGGCATCTATTCGCCGTCGTCAGTGTCATCGCCGGCGTTT 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5