BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09730.2
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317774 jgi|Araly1|317774|fgenesh1_pm.C_scaffold_3000790 1181 0.0
> Ahg317774 jgi|Araly1|317774|fgenesh1_pm.C_scaffold_3000790
Length=1179
Score = 1181 bits (639), Expect = 0.0
Identities = 712/747 (95%), Gaps = 6/747 (1%)
Strand=Plus/Plus
Query 515 ATCATTCCTCTTTCAGCTCAGCACTGGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 574
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 ATCATTCCTCTTTCAGCTCAGCACTTGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 478
Query 575 AAGGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTACCAAAGTCATCCAAGAGC 634
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 AAAGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTGCCAAAGTCATCCAAGAGC 538
Query 635 TAAAAGATGAACTCTCTAGGATTAAATCTTTACAGGGTTTCAAGTTTCGTGGCTGTGCAG 694
||||||||||||| |||||||| |||||||||||| ||||||||||| | || |||
Sbjct 539 TAAAAGATGAACTTTCTAGGATAAAATCTTTACAGAGTTTCAAGTTT-GCAGC--AACAG 595
Query 695 CAAGTTCTGAGAAATCTGGCCAGATAGATCTCAATAGATCAGAGATGGTGAGTAGAGTAT 754
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||
Sbjct 596 CAAGTTCTGAGAAATCTGGCCAGATAAATCTCAGTAGATCAGAGATGGCGAGTAGAGAAT 655
Query 755 CTCTCG--AT-ATCAAGTCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 811
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTCTCGATATCATCAAGGCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 715
Query 812 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 775
Query 872 AGAAATTGAACTTGGCTGAGACAAGTGATGTTATGGAGGAATGTAAGGATTTGGTTAATG 931
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 776 AGAAATTGAACTTGGCTGAGACAAGTGATGCTATGGAGGAATGCAAGGATTTGGTTAATG 835
Query 932 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 895
Query 992 ACCTTCTCATCGAACAACAAGAAGGACAGATCAATGAGCTTGAAGCTGAACTACAAACTA 1051
|||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 896 ACCTTCTCATTGAACAACAAGAGGGACAGATCAATGAACTTGAAGCTGAACTGCAAACTA 955
Query 1052 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1015
Query 1112 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAATC 1171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAACC 1075
Query 1172 AGGATCTCTCAGTCTCATGGAGCCAACATAACAAAACTGATCACGAGGCAAGAAAGCAGA 1231
|||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| ||
Sbjct 1076 AGGATCTCTCAGTCTCATGGAGCCAACAAAACAAAATTGATCATGAGGTAAGAAAGCCGA 1135
Query 1232 TCATTGGGATGAAAAGGCCTATGGAGT 1258
|| ||||||||||||||||||||||||
Sbjct 1136 TCGTTGGGATGAAAAGGCCTATGGAGT 1162
Score = 516 bits (279), Expect = 2e-145
Identities = 324/345 (94%), Gaps = 5/345 (1%)
Strand=Plus/Plus
Query 85 ATGTGGCAAGTTATTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTTGTAGCCAAACGC 144
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTGGCAAGTTCTTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTAGTAGCCAAACGG 60
Query 145 TTATTCAACCCTTTCTCTCGAGATTCTCCTACTCCCGAGAATTACGCTGAAGAGCAGGAA 204
|| ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 61 TTCTTCAACCCTTTCTCTCGAGATTCTCCTACTCTCGAGGATTACACTGAAGAGCAGGAA 120
Query 205 -CCAGTCACTCCTCCTGTGAGCATTGGATTTCTCGATTCTCCTTGCGACAAAACCAATGG 263
||| || |||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCCA-TCGCTCCTCCTGTAAGTATTGGATTTCTCGATTCTCCTTTCGACAAAACCAATGG 179
Query 264 CGTTTTCCGATTTTCTAGTTCCGGGTCTACCGTTAACTCAGGATCAGGATCCGGGTCTTC 323
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 180 CGTTTTCCGGTTTTCTAGTTCCGGGTCTACCGTTAACTCTGGATCCGGATCCGGGTCTTC 239
Query 324 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATgaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAA 299
Query 384 gaagaagaagaaaaagaaTAGTGGGGGATGTGAGATCGAGAAGCG 428
||||||||| ||| || ||||| |||||||||||||||||||||
Sbjct 300 GAAGAAGAA-AAA--GATTAGTGAGGGATGTGAGATCGAGAAGCG 341
Score = 104 bits (56), Expect = 2e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 456 GAAGAGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 514
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GAAGCGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5