BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09730.2 Length=1355 Score E Sequences producing significant alignments: (Bits) Value Ahg317774 jgi|Araly1|317774|fgenesh1_pm.C_scaffold_3000790 1181 0.0 > Ahg317774 jgi|Araly1|317774|fgenesh1_pm.C_scaffold_3000790 Length=1179 Score = 1181 bits (639), Expect = 0.0 Identities = 712/747 (95%), Gaps = 6/747 (1%) Strand=Plus/Plus Query 515 ATCATTCCTCTTTCAGCTCAGCACTGGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 574 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 419 ATCATTCCTCTTTCAGCTCAGCACTTGGTGTCTGCATGATGTATATGATGTCAGCAGAGA 478 Query 575 AAGGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTACCAAAGTCATCCAAGAGC 634 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 479 AAAGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTGCCAAAGTCATCCAAGAGC 538 Query 635 TAAAAGATGAACTCTCTAGGATTAAATCTTTACAGGGTTTCAAGTTTCGTGGCTGTGCAG 694 ||||||||||||| |||||||| |||||||||||| ||||||||||| | || ||| Sbjct 539 TAAAAGATGAACTTTCTAGGATAAAATCTTTACAGAGTTTCAAGTTT-GCAGC--AACAG 595 Query 695 CAAGTTCTGAGAAATCTGGCCAGATAGATCTCAATAGATCAGAGATGGTGAGTAGAGTAT 754 |||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| || Sbjct 596 CAAGTTCTGAGAAATCTGGCCAGATAAATCTCAGTAGATCAGAGATGGCGAGTAGAGAAT 655 Query 755 CTCTCG--AT-ATCAAGTCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 811 ||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GTCTCGATATCATCAAGGCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGG 715 Query 812 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 AGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGC 775 Query 872 AGAAATTGAACTTGGCTGAGACAAGTGATGTTATGGAGGAATGTAAGGATTTGGTTAATG 931 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 776 AGAAATTGAACTTGGCTGAGACAAGTGATGCTATGGAGGAATGCAAGGATTTGGTTAATG 835 Query 932 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 991 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCC 895 Query 992 ACCTTCTCATCGAACAACAAGAAGGACAGATCAATGAGCTTGAAGCTGAACTACAAACTA 1051 |||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| Sbjct 896 ACCTTCTCATTGAACAACAAGAGGGACAGATCAATGAACTTGAAGCTGAACTGCAAACTA 955 Query 1052 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 CTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGAC 1015 Query 1112 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAATC 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1016 GCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAACC 1075 Query 1172 AGGATCTCTCAGTCTCATGGAGCCAACATAACAAAACTGATCACGAGGCAAGAAAGCAGA 1231 |||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| || Sbjct 1076 AGGATCTCTCAGTCTCATGGAGCCAACAAAACAAAATTGATCATGAGGTAAGAAAGCCGA 1135 Query 1232 TCATTGGGATGAAAAGGCCTATGGAGT 1258 || |||||||||||||||||||||||| Sbjct 1136 TCGTTGGGATGAAAAGGCCTATGGAGT 1162 Score = 516 bits (279), Expect = 2e-145 Identities = 324/345 (94%), Gaps = 5/345 (1%) Strand=Plus/Plus Query 85 ATGTGGCAAGTTATTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTTGTAGCCAAACGC 144 |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGTGGCAAGTTCTTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTAGTAGCCAAACGG 60 Query 145 TTATTCAACCCTTTCTCTCGAGATTCTCCTACTCCCGAGAATTACGCTGAAGAGCAGGAA 204 || ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| Sbjct 61 TTCTTCAACCCTTTCTCTCGAGATTCTCCTACTCTCGAGGATTACACTGAAGAGCAGGAA 120 Query 205 -CCAGTCACTCCTCCTGTGAGCATTGGATTTCTCGATTCTCCTTGCGACAAAACCAATGG 263 ||| || |||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 121 CCCA-TCGCTCCTCCTGTAAGTATTGGATTTCTCGATTCTCCTTTCGACAAAACCAATGG 179 Query 264 CGTTTTCCGATTTTCTAGTTCCGGGTCTACCGTTAACTCAGGATCAGGATCCGGGTCTTC 323 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 180 CGTTTTCCGGTTTTCTAGTTCCGGGTCTACCGTTAACTCTGGATCCGGATCCGGGTCTTC 239 Query 324 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATgaa 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAA 299 Query 384 gaagaagaagaaaaagaaTAGTGGGGGATGTGAGATCGAGAAGCG 428 ||||||||| ||| || ||||| ||||||||||||||||||||| Sbjct 300 GAAGAAGAA-AAA--GATTAGTGAGGGATGTGAGATCGAGAAGCG 341 Score = 104 bits (56), Expect = 2e-21 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 456 GAAGAGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 514 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 GAAGCGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAAC 394 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50703479610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5