BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G09735.1

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478296 jgi|Araly1|478296|fgenesh2_kg.3__997__AT3G09735.1          697    0.0  


> Ahg478296 jgi|Araly1|478296|fgenesh2_kg.3__997__AT3G09735.1
Length=462

 Score =  697 bits (377),  Expect = 0.0
 Identities = 440/469 (94%), Gaps = 9/469 (2%)
 Strand=Plus/Plus

Query  27   TTTCTTGGCAAAACTCGTCTTCAAGCTGTC-TATATTTTCTCCGGCGAGCGGTGCTGATA  85
            |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct  1    TTTCTTGGCAAAACTCGTCTTCAAGCTGTCTTATATATTCTCCGGCGAGTGGTGCTGATA  60

Query  86   ACCTCGTAGCTCCGAAACGCCGCCATGGCCGCAGAATTTGATGGAAAAATCGAAAGCAAA  145
            | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  61   ATCTCGTAGCTCCGAAGCGCCGCCATGGCCGAAGAATTTGATGGAAAAATCGAAAGCAAA  120

Query  146  GGGCTAAACCCGGGACTGATCGTCCTTCTTGTAATAGGAGGGTTGCTACTGACATTCCTT  205
            || ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct  121  GGTCTAAACCCGGGACTGATTGTCCTTCTTGTAATTGGAGGGTTGCTAGTGACATTCCTT  180

Query  206  GTAGGAAACTTCATCCTTTACACATACGCACagaagaatttacctccgaggaagaagaaa  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTAGGAAACTTCATCCTTTACACATACGCACAGAAGAATTTACCTCCGAGGAAGAAGAAA  240

Query  266  cccg-tttctaagaagaagatgaagaaagagaagatgaagCAAGGCGTCCAAGTTCCTGG  324
             ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  -CCGCTTTCTAAGAAGAAGATGAAGAAAGAGAAGATGAAGCAAGGCGTCCAAGTTCCTGG  299

Query  325  CGAGTAGCTTTTGTTATATGTTGTCGGGATTATCCTTTGATGATAACTCACTCTGCTGGA  384
            ||||||||||||| ||||||| |||||||||||||||||||||||| ||||| || ||||
Sbjct  300  CGAGTAGCTTTTGCTATATGTAGTCGGGATTATCCTTTGATGATAA-TCACTTTGTTGGA  358

Query  385  CTAGAACTTGTATGACTCCGTTACTCATTAGTTTTTTGATGTTTTCGATGTAGCATGCAT  444
            |||||| || ||||||||  |||||| |||||||||  ||||||||||||||||||| ||
Sbjct  359  CTAGAAATTATATGACTCTTTTACTCTTTAGTTTTTA-ATGTTTTCGATGTAGCATG-AT  416

Query  445  GATATTTTCTTGAGTTGACAATCTATAAGCTTTACTGAGATAATTTCAT  493
             || ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct  417  -AT-TTT-CTTGAGTTGACAATCTATAAGCTTTGCTGAGATAATTTCAT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18963327733


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5