BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09740.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928651 jgi|Araly1|928651|scaffold_301108.1 1690 0.0
> Ahg928651 jgi|Araly1|928651|scaffold_301108.1
Length=1020
Score = 1690 bits (915), Expect = 0.0
Identities = 986/1021 (97%), Gaps = 2/1021 (0%)
Strand=Plus/Plus
Query 84 ATTCAAAATTTCACAAATTAAAGTCTTCTTCCTCTCCGAATCAGAGATTGTCTCCTTC-T 142
|||| |||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 1 ATTC-AAATTTCACAAAATAAAGTCTTCTTCCTCTTCGAATCAGAGATTTTCTCCTTCTT 59
Query 143 TAGCTCAGATCTGGGAGCTTCTTGTGATAGATTTGGAAGAAGATGACTGTGATCGATATT 202
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 60 TAGCTCAGATCTGGGAGCTTCTGGTGATTGATTTGGAAGAAGATGACTGTGATCGATATT 119
Query 203 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGG 262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTGACTAGAGTTGACTCGATCTGTAAGAAGTACGACAAGTACGATGTCGACAAACAGCGT 179
Query 263 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGGCCAATATCTCCGGCGATGATGCCTTTGCTCGTCTCTATGGAGCTTTCGAAACCCAA 239
Query 323 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAACAGGGCTGCTGCT 382
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 240 ATCGAGACCGCTCTCGAGAAAGCTGAACTTGTTACGAAGGAGAAAAATAGAGCTGCTGCT 299
Query 383 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCACGATTGTCAGAGGAAGTTCCCAAG 442
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 GTTGCAATGAATGCTGAGATCCGCCGGACCAAGGCTCGATTGTCAGAGGAAGTTCCCAAG 359
Query 443 TTGCAAAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 502
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCAGAGACTTGCTGTCAAGCGGGTTAAGGGCCTTACAACCGAAGAGCTTGCTGCGAGA 419
Query 503 AATGATTTGGTGCTCGCTCTTCCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 562
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATGATTTAGTGCTCGCTCTACCAGCCAGGATTGAAGCCATACCTGATGGGACAGCAGGT 479
Query 563 GGCCCTAAAAGCACTAGTGCTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 622
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCCCTAAAAACACTAGTGGTTGGACTCCCTCCTCAACAACATCTCGTCCTGATATCAAA 539
Query 623 TTTGATTCAGATGGGCGTTTTGACGATGATTACTTTCAAGAATCAAATGAATCTAGCCAA 682
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 540 TTTGATTCAGATGGGCGTTTTGATGATGATTACTTTCAAGAATCACATGAATCTAGCCAA 599
Query 683 TTCAGGCAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCC 742
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCAGACAGGAGTATGAGATGCGGAAAATAAAACAGGAACAAGGTCTTGACATGATCTCT 659
Query 743 GAAGGGTTAGATGCTTTGAAGAACATGGCTTCTGATATGAACGAGGAACTGGATAGACAA 802
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GAAGGGTTAGATGCTTTGAAGAACATGGCGTCTGATATGAACGAGGAACTGGATAGACAA 719
Query 803 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCCGATCTTAAGAAC 862
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 720 GTTCCACTGATGGATGAAATCGACACAAAGGTGGACAGAGCAACCTCGGATCTTAAAAAC 779
Query 863 ACCAATGTTAGACTTAAAGATACCGTGAACCAGCTGAGATCTAGCCGGAACTTCTGTATC 922
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 ACCAATGTCAGACTTAAAGATACCGTGAACCAGCTGAGATCAAGCCGGAACTTCTGTATC 839
Query 923 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GATATTGTTTTGTTGTGTATTGTTCTGGGTATCGCTGCATACTTATACAATGTACTGAAG 899
Query 983 TAATGAGATGAACCCTACGAAAGGACCCATTAGTACTTATCACCCGAGTCAATATCCAGT 1042
| ||||||||||| | ||||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 900 TGATGAGATGAACACGACGAAAGGACCCAGTAGTACTTATCACCCGAGTCAGTGTCCAGT 959
Query 1043 GTGTGCTTGTGTCTTACTCTTCTTCTCTGATATTTCTACGAGAGTTTCTTCTTAATGTCA 1102
|||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 960 GTGTGCTTGTGTCTTAATCTTCTACTCTGATATTTCTGCGAGAGTTTCTTCCTAATGTCA 1019
Query 1103 A 1103
|
Sbjct 1020 A 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5