BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09760.1
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478298 jgi|Araly1|478298|fgenesh2_kg.3__999__AT3G09760.1 2641 0.0
Ahg487088 jgi|Araly1|487088|fgenesh2_kg.6__222__AT5G03180.1 435 8e-121
> Ahg478298 jgi|Araly1|478298|fgenesh2_kg.3__999__AT3G09760.1
Length=1778
Score = 2641 bits (1430), Expect = 0.0
Identities = 1609/1694 (95%), Gaps = 17/1694 (1%)
Strand=Plus/Plus
Query 142 AGATTCTTCTTCTCCTCTGCTTTTCTATTCTCTGGGAGCTCGATGATGGATGATAAAGCT 201
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 99 AGATTCTTCTTCTCCTCTGCTTTTCTATTTTCTGGGAGCTCGATGGTGGATGATAAAGCT 158
Query 202 CGCAAAGAAGAAGAACATCATGTGTCTCACCAACATAATCATTCTCCTCTGCAAAGGGAT 261
||| || |||||||||| |||| ||||||||||||| |||||||||||||||||| ||||
Sbjct 159 CGCCAACAAGAAGAACAACATGGGTCTCACCAACATCATCATTCTCCTCTGCAAATGGAT 218
Query 262 GGAAATTCTGCTGAGATTGCACAAGGACAAGAGCTATCATCACCGGGCCGAGACCTATGG 321
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 219 GGAAATTCTGCTGAGATAGCAGAAGAACAAGAGCTATCATCACCGGGCCGAGACCTATGG 278
Query 322 AGGCGAGGTCTTGTGTTAGATTTACCATCAACAACACCTGAAGATACTACAAGAGATGAT 381
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 279 AGGCGAGGTCTTGTGTTAGATTTACCATCAACAACACCTCAAGATACTACAAGAGATGAT 338
Query 382 CTTTTTAGACGAAATGCATCTTTAACTTCAAGTCCTGTTGCCAAAAGAGTCAACTTTTCT 441
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 339 CTTTTGAGACGAAATGCATCTCTAACTTCAAGTCCTGTTGCCAAAAGAGTCAACTTTTCT 398
Query 442 CCAATGTCCAGCCCTAGAGTCGGACAACGTGGTGCATCCTTGAGTCcttcttcttctact 501
|||||||| ||||||||| |||| ||||||| ||||||||||||||| || || || ||
Sbjct 399 CCAATGTCGAGCCCTAGAATCGGGCAACGTGCTGCATCCTTGAGTCC--CTCCTCCT-CT 455
Query 502 tcttcttcttcAAGAAACAAACCTAATAGCCTGAAGAATCTAATCCCCAAGTTAAGCTTT 561
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TCTTCGTCATCAAGAAACAAACCTAATAGCCTGAAGAATCTAATCCCCAAGTTAAGCTTC 515
Query 562 AAGAACCGGAACAGCAATAACGATAATGTGGATATCGAGAAAGCCGCGGATTTGGGCTTT 621
||||||||||||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 516 AAGAACCGGAACAGC----A--ATAATGTGGATATCGAGAAAGCCGCGGAGTTGGGCTTT 569
Query 622 GTGTCCTCCCCTTCTTCAGGAAATGGCAGGGACAGGTCTACATGGACTCTCACTAATATT 681
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 570 GTGTCCTCCCCGTCTTCAGGAAATGGCAGGGACAGGTCCACATGGACTCTCACTAATATT 629
Query 682 TTAACTCCAAGATTGAAGAAAACTGAGTCTCTTCCTGTAACCCCTATAGCTCACTCAAAT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TTAACTCCAAGATTGAAGAAAACTGAGTCTCTTCCTGTAACCCCTATAGCTCACTCAAAT 689
Query 742 CCTGAGTCCACTCACGGGAGATTTGCCGTTGATCTAGTTACTTCCACGAAAAAAGGGCCT 801
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 690 CCTGAGTCCACTCACGGGAGATTTGCGGTTGATCTAGTTACTTCCACGAAAAAAGGGCCT 749
Query 802 CCACTGCCTATCCACCGTTCACGCTCTGTCCCAGCATTCAACAAAGATGGAAGTCAAAGG 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 750 CCACTGCCTATCCACCGTTCACGCTCTGTCCCAGCATTCAACAAAGATGGAAGTCTAAGG 809
Query 862 CAATTAGGTGTTTTCCGGGTGATTCCAACTCCAAACATGTCTCCAACCAGAAATACTATT 921
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 810 CAATTAGGTGTTTTCCGGGTGATTCCAACTCCAAACATGACGCCAACCAGAAATACTATT 869
Query 922 AAACTTAACGACGCGAATGTTGATGGAGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGT 981
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 870 AAACTTAACGACGCGAATGTTGATGGCGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGT 929
Query 982 AGAATCTGCCTTGTAGAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTTTGTGT 1041
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 930 AGAATCTGCCTGGTAGAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTATGTGT 989
Query 1042 AGAGGGGAACTAGCTCTTGCCCACAAAGAATGTACAATCAAATGGTTCACCATTAAAGGA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 AGAGGGGAACTAGCTCTTGCCCACAAAGAATGTACAATCAAATGGTTCACCATTAAAGGA 1049
Query 1102 AACAGAACATGTGATGTGTGCAAGCAAGAGGTTCAGAATCTCCCTGTGACCCTTCTTCGC 1161
||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1050 AACCGCACATGTGATGTGTGCAAACAAGAGGTTCAGAATCTCCCTGTGACCCTTCTACGC 1109
Query 1162 ATGCAGAATTCTCGGGGTAGTATTGGAGCTCCAGACGCCGAGGCTGCACACTACAGTTTA 1221
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1110 GTGCAGAATTCTCGGGGTAGTATTGGAGCTCCAGATACCGAGGCTGCACACTACAGTTTA 1169
Query 1222 TGGCAGGATGTTCCAATTCTTGTGATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAG 1281
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1170 TGGCAGGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAG 1229
Query 1282 CAGCTTCTGCTTACAAAAATGCAATCTGGCGCCATTGCAGTTTCTTTACCATTCTCGTGC 1341
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1230 CAGCTTCTGCTTACAAAAATGCAATCCGGCGCCATTGCAGTTTCTTTACCATTCTCTTGC 1289
Query 1342 GTTCTTGGTCTTTTTGCTTCGATGACGGCAACAACAATGGTGCCGAAGAGATATGTCTGG 1401
||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1290 GTTCTTGGTCTCTTTGCTTCGATGACGTCAACAACAATGGTGCAGAAGAGATATGTCTGG 1349
Query 1402 ATTTACGCTACAACTCAGTTCGGTCTTGTTGtttttttCTCTCACATTTTCTTCACATTG 1461
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1350 ATTTACGCCACAACTCAGTTCGGTCTTGTTGTTTTTTTCTCTCACGTTTTCTTCACATTG 1409
Query 1462 GTTCGCATGCAGCCGGTTGTGGCCATTCTCTTAGCCACTATCGTTGGGTTTGGACTCACC 1521
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1410 GTTCGCATGCAGCCGGTTGTGGCCATTCTCTTAGCCACAATTGTTGGGTTTGGACTCACC 1469
Query 1522 ATGAGCGGTACAACAGGTATAGTCGAGTTTTCGAAATGGAGGAGAAGCAATAGGACAGCT 1581
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1470 ATGAGCGGTACAACAGGTCTAGTCGAGTTTTCAAAATGGAGGAGAAGCAATAGGACAGCT 1529
Query 1582 GAACTTCCAAGCAGTAGTCAAGTGGATCAACCA-CTGGTTGAGACAACAGATCAGAACAT 1640
|||| ||||| ||||||||| |||||||||||| | |||||||||||||||||||| |||
Sbjct 1530 GAACCTCCAAACAGTAGTCAGGTGGATCAACCATC-GGTTGAGACAACAGATCAGAGCAT 1588
Query 1641 TTCTGGATCAAGAAACTGAAAGCCAGAGGTCCGTCAATACTAATCATATGTTCCAGTAGT 1700
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1589 ATCTGGATCAAGAAACTGAA-GCCAGAGGTCC-TGAATACTAATCATATGTTCCAGTAGC 1646
Query 1701 GGTCTATGATCTCGA-TGGAG-ATCCATCTATTTAGAGATGTGAGAACAGATTGGTCATG 1758
||| |||| | |||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 1647 GGTGTATGGTATCGAATCAAGTAT--ATCTATTTAGAGATGTGAGAACAGATTGGTCATG 1704
Query 1759 TGAGTTAAGTAGTGGTAGTTGACGAGATTAAGGCTCGATTTTTGGGGGTCTCTTTtgtgt 1818
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1705 TGAGTTAAGTAGTGATAGTTGACGAGATTAAGGCTCGATTTTGGGGGGTCTCTTTTGTGT 1764
Query 1819 gtgaatgtgagtgt 1832
|||| | |||||||
Sbjct 1765 GTGATTATGAGTGT 1778
Score = 139 bits (75), Expect = 7e-32
Identities = 91/98 (93%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 1 ATGATCGATCAGATATCTCAATTTCAGGAACCCAGAAAGAGGGACTTGTCTTTTACCTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGATCGATCAGATATCTCAATTTCAGGAACCCAGAAAGAGGGACTTGTCTTTTTCCTCC 60
Query 61 AAAGGGTTCCTG-C---CGTTTCTTTTCTACAATTTTT 94
|||||||||||| | |||||||| |||||||||||
Sbjct 61 AAAGGGTTCCTGACGTTCGTTTCTTGCCTACAATTTTT 98
> Ahg487088 jgi|Araly1|487088|fgenesh2_kg.6__222__AT5G03180.1
Length=1690
Score = 435 bits (235), Expect = 8e-121
Identities = 691/901 (77%), Gaps = 72/901 (8%)
Strand=Plus/Plus
Query 726 TATAGCTCACTCAAATCCTGAGTCCACT-CACGGGA-G-AT----TTGCCGTTGATCTAG 778
|||| |||||||||| |||||||||| | |||||| | || ||| ||||||| |
Sbjct 687 TATAACTCACTCAAACCCTGAGTCCA-TGAACGGGAGGTATGCGGTTGAGGTTGATCCGG 745
Query 779 TTACTTCCACGAAAAAAGG-GCCTCCACTGCCTATCCACCGTTCACGCTCTGTCCC-AGC 836
|||| |||| | ||| || || | ||||||||| | ||||||||||||||||| | |
Sbjct 746 TTACATCCATG-AAAGGGGAGCGTTTACTGCCTATTCGTCGTTCACGCTCTGTCCCTA-C 803
Query 837 A---TTCAACAAAGATGGAAGT-CAAAGGCAATTAGGTGTTTTCCGGGTGATTCCAACTC 892
| |||||||||||||||||| ||| ||| | |||||||||||| |||||||| ||||
Sbjct 804 ATTCTTCAACAAAGATGGAAGTGTAAA-GCAGTCAGGTGTTTTCCGCGTGATTCCTACTC 862
Query 893 CA-AACAT---G-TCTCCA-A--CCAGA-A--AT--A--CTAT-TAAACTTAACGACGCG 936
|| | | | | | | | ||| | || | | || ||| | || || |
Sbjct 863 CATCTCGTGGGGATGAGAAGAGTCTAGAGATGATGCAGGC-ATCGAAAATGAATGA-AC- 919
Query 937 AATGTTGATGGAGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGAATCTGCCTTGTA 996
||| |||||| | |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 920 -ATGATGATGGCGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGAATCTGTATGGTT 978
Query 997 GAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTTTGTGTAGAGGGGAACTAGCT 1056
||| ||| |||||| |||||| || |||||||||||| |||| | ||||||| | |||
Sbjct 979 GAAATGGAAGAAGAAGAAGAAGCTTTTAAGATGGAATGTATGTGCAAAGGGGAATTGGCT 1038
Query 1057 CTTGCCCACAAAGAA-TGTACAATCAAATGGTTCACCATTAAAGGAAACAGAACATGTGA 1115
|||||||||||| | || || ||||||||||| || |||||||| |||| |||||||||
Sbjct 1039 CTTGCCCACAAA-ACGTGCACGATCAAATGGTTTACAATTAAAGGGAACATAACATGTGA 1097
Query 1116 TGTGTGCAAGCAAGAGGTTCAGAATCTCCCTGTGACCCTTCTTCGCATGCAGAATTCTCG 1175
||| || ||||||||||| | |||||||| || |||||||| || ||||| ||||||
Sbjct 1098 TGTATGTAAGCAAGAGGTGAAAAATCTCCCGGTTACCCTTCTCCGTGTGCAGGATTCTCA 1157
Query 1176 GGGTAGTAT-TGGAGCT-CCAG--ACGCCGAGGCTGCACACTACAGTT-T-A-TGGCAGG 1228
| || | | |||| |||| | |||| | ||| | || | | | ||||| |
Sbjct 1158 AGACCGT-TCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAATGAATGGCAAG 1216
Query 1229 ATGTTCCAATTCTTGTGATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAGCAGCTTC 1288
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1217 ATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTTGAGCAGCTTT 1276
Query 1289 TGCTTACAAAAATGCAATCTGGCGCCATTGCAGTTTCTTTACCATTCTCGTGCGTTCTTG 1348
|| ||| | | ||| ||||| ||||| ||||| | ||||||| ||||| ||| || | |
Sbjct 1277 TGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCTTGCATTATCG 1336
Query 1349 GTCTTTTTGCTTCGATGACGGCAACAACAATGGTGCCGAAGAGA-TATGTCTGGATTTAC 1407
||||| |||| || |||| |||||||||||||| ||||| | ||||| ||||| |||
Sbjct 1337 GTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGA-ACTATGTGTGGATCTAC 1395
Query 1408 GCTACAACTCAGTTCGGTCTTGTTGtttttttCTCTCA-CATTTTCTTCACA-TTG---G 1462
|| || | |||||||||| |||| || ||||| |||| | |||||| |||| ||| |
Sbjct 1396 GCAACCATTCAGTTCGGTTTTGTGGTCCTTTTCGCTCATC-TTTTCTACACAGTTGTAAG 1454
Query 1463 -TTCGCATG-----CAGCCGGT--TGTGGCCATTCTCTTAGCCACTATCGTTGGG-TTTG 1513
|| | ||| |||||||| |||| | ||| ||||||||||||| | | || ||||
Sbjct 1455 ATTTG-ATGTTAAGCAGCCGGTAATGTG-C-ATTGTCTTAGCCACTAT-GATCGGATTTG 1510
Query 1514 GACTCACCATGAGCGGTACAACAGGTAT-AGTCGAGT-TTTCGAAATGGAGGAGAAGCAA 1571
|||||||||||| ||| ||||||| ||| | ||||| ||| ||||||||||||||||||
Sbjct 1511 GACTCACCATGACCGGCACAACAGCTATTAA-CGAGTATTT-GAAATGGAGGAGAAGCAA 1568
Query 1572 T 1572
|
Sbjct 1569 T 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74428338730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5