BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09770.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478299 jgi|Araly1|478299|fgenesh2_kg.3__1000__AT3G09770.1 2067 0.0
> Ahg478299 jgi|Araly1|478299|fgenesh2_kg.3__1000__AT3G09770.1
Length=1582
Score = 2067 bits (1119), Expect = 0.0
Identities = 1482/1644 (90%), Gaps = 77/1644 (5%)
Strand=Plus/Plus
Query 23 TTTGGGAACATAAACACCATCGAAGGAGGGTGGGAGGTGTTTTATGTTCATGGGTGGAGC 82
|||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||
Sbjct 2 TTTGGGAACATAAACACCATCGAA-AAGGGT----GGT-CTTTATGTTCATGAGTGGAGC 55
Query 83 TTCTTGGCCAACCTGACCCCAT--TCATCATATCATTACCCActttcttctcctaaatta 140
||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 56 TTCTTGGCCAACC-GACCCCATCATCATCATCTCATTACCCACTTTCTTCCCCTAAATTA 114
Query 141 ttctctcttatctctctctctctctttttattttctttctttcttaattcatctaaactc 200
| |||| ||| | |||||||| | || |||| ||| ||| || ||| |
Sbjct 115 -T-TCTC---TCT-TATCTCTCTC-TCTT-TTTT-TTT-ATTC----TT--TCT----T- 153
Query 201 tctctgcttttgcttttcGTAATTCCTTACATTTCACTCAATATTAATCCCCAGAATCTC 260
||| | || | || || | | | | | | || ||||||||||| | |||||
Sbjct 154 TCT-T--AATT-C--ATCAAAAAT-C-T-C-TCT-GCTTTTTATTAATCCCC-GGATCTC 201
Query 261 CGATCCACCCACAAATTTAGCAATTTTCTGAGATTTGATCATTTGGGTCACCAAAAAATC 320
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 202 CGATCCACCCACAAACTTAGAAATTTTCTGAGATTTGATCATTTGGGTCACCAAAAGATC 261
Query 321 TTGTCTTTTTGATCTGGGTTTAACGCCAATAA-CATATGGGAAACATTAGCAGCAGCGGT 379
||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 262 TTGTC-TTTTGATTTGGGTTTAACGCCAATAATCATATGGGAAACATTAGCAGCAGCGGC 320
Query 380 GGTGAAGGTAGACGCCGTCGACGGCGAAACCATACGGCGGctccaccaccacctcctcct 439
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 GGTGAAGGTAGACGCCGTCGACGGCGAAACCATACGGCGGCT---CCACCACCTCCTCCT 377
Query 440 cctccttcttcttctcttcctccaccacctctacctACAGAAATCCAAGCTAATCCCATC 499
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 378 CCTCCTTCTTCTTCTCTTCCTCCACCACCTCCAGCTACAGAAATCCAAGCTAATCCCATC 437
Query 500 GTTTTCGCTGCCGTTACTCCCTATCCTAATCCTAATCCTAATCCGGTTTACCAGTACCCT 559
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 438 GTTTTCGCCGCCGTTACTCCGTATCCAAATCCTAATCCTAATCCGGTTTACCAGTACCCT 497
Query 560 GCTTCTTACTA-CCACCATCCTCCCCCGGGAGCCATGCCTCTTCCG-C-CGTACGAC-CA 615
||||||||| | |||||||||||| |||||| ||||| | |||| | | | || | |
Sbjct 498 GCTTCTTAC-ATCCACCATCCTCCGCCGGGAACCATGTCGGGTCCGCCTCTTCCGGCGTA 556
Query 616 CCACCTCCAACATCATCCACCGCATCCTTACCACAACCACTCTTGGGCTCCCGTGGCGAT 675
| ||| || || | |||| |||||||||||||||||||||||||| |||||||||||
Sbjct 557 CGACCACC-AC--C-TCCA--TCATCCTTACCACAACCACTCTTGGGCCCCCGTGGCGAT 610
Query 676 GGCCAGATACCCTTATGCTGGTCACATGATGGCTCAACCGACTCCTTACGTTGAACACCA 735
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 611 GGCCAGATACCCTTATGCTGGTCACTTGATGGCTCCCCCGACTCCTTACGTTGAACACCA 670
Query 736 GAAAGCCGTCACGATTCGTAACGACGTTAATCTCAAGAAGGAGTCTCTTAGGCTTGAACC 795
||||||||||||||||||||||||||||||||| ||||| ||| | || |||||||||||
Sbjct 671 GAAAGCCGTCACGATTCGTAACGACGTTAATCTTAAGAAAGAGACCCTCAGGCTTGAACC 730
Query 796 CGACCCGGATAATCCGGGTCGCTTTCTCGTCTCCTTTACGTTTGATGCAACCGTCTCCGG 855
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 731 CGACCCGGATAATCCGGGTCGCTTTCTCGTCTCCTTCACGTTTGATGCAACCGTCTCCGG 790
Query 856 AAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAAACTCACAGCGACAAA 915
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 791 AAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAATCTCACAGCGACAAA 850
Query 916 GGAAGATATACTGCCACCTATCACTCTAGATTTCGAGAAAGGACTTGGTCAGAAGTTTAA 975
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 851 GGAAGATATTCTGCCACCAATCACCCTAGATTTCGAGAAAGGACTTGGTCAGAAGTTTAA 910
Query 976 ACAATCATCTGGTTCTGGTATAGACTTTTCGGTCTTTGAGGACGTTGAGCTGTTCAAAGC 1035
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 911 ACAATCATCTGGTTCTGGTATAGACTTTTCGGTCTTTGAGGAAGTTGAGCTGTTCGAGGC 970
Query 1036 GGCCGCAGACACAGAGATCTATCCATTAGCGGTTAAGGCAGAAGCAGCTCCCTCAGGTGG 1095
|| || | | ||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 971 GG-CG-A-ATACAGATATCTATCCATTGGCGGTTAAGGCAGAAGCAGCTCCCTCA---GG 1024
Query 1096 TGAGAATGAAGAAGAAGAAAGGTCGGGGTC---G---AAGAATGCGCAGATTACTCAAGC 1149
||||||| ||||||||||||| ||| || | |||||||||||||||||||||||
Sbjct 1025 TGAGAAT---GAAGAAGAAAGGTTGGGATCGAAGAAAAAGAATGCGCAGATTACTCAAGC 1081
Query 1150 GGTTTATGAGAAGGATAAAGGAGAGATTAAGATTAGAGTGGTGAAGCAGATACTATGGGT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GGTTTATGAGAAGGATAAAGGAGAGATTAAGATTAGAGTGGTGAAGCAGATACTATGGGT 1141
Query 1210 TAATGGAACGAGATATGAGTTGCAGGAGATTTATGGGATTGGGAATACAGTTGAGGGGGA 1269
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1142 TAATGGAACAAGATATGAGTTGCAGGAGATTTATGGGATTGGGAATACCGTTGAGGGCGA 1201
Query 1270 TGATGATTCAGCTGATGATGCTAATGATCCTGGTAAAGAATGTGTTATATGTTTGTCTGA 1329
||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 1202 TGAGGATTCAGCTGATGATGCTAATGATCCGGGAAAAGAATGTGTGATATGCTTGTCTGA 1261
Query 1330 ACCACGAGACACCACTGTTCTTCCATGTCGACATATGTGTATGTGTAGCGGATGTGCTAA 1389
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1262 ACCACGAGACACGACTGTTCTTCCATGCCGACATATGTGTATGTGCAGCGGATGCGCTAA 1321
Query 1390 GGTATTGAGGTTTCAGACAAATCGATGCCCCATTTGCAGGCAACCTGTTGAAAGGCTTTT 1449
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1322 GGTATTGAGGTTTCAGACAAATCGATGCCCGATTTGCAGGCAACCTGTCGAAAGGCTTTT 1381
Query 1450 GGAGATAAAAGTTCACGGTAACAACGGAAGCGGGAATAACACCGGACAGGGAGAAACAGT 1509
||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||
Sbjct 1382 GGAGATAAAAGTTCACGGTAATAGCGGAAGTGGGAATAACACCGGACAGGGTGAAACAGT 1441
Query 1510 TGAACAAGAGTAGCTAAACACGGCCGAGTATGGATTGAAATGCCATC-GAAATATTAGTA 1568
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1442 TGAACAAGAGTAGCCAAACACGGCCGAGTATGGATTGAAATGCCATCTGATATATTAGTA 1501
Query 1569 GTATATGCATGTTTGATCCTTGTATGTTAACAACAAAATGTGTGATTGTCAATTCATAAT 1628
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 -TAT--GCATGTTTGATCCTTGTATGTTAACAACAAAATGTGTGATTGTCAATTCATAAT 1558
Query 1629 ATAGAGATTACGAAATCATTTGGA 1652
||||||||||||||||||||||||
Sbjct 1559 ATAGAGATTACGAAATCATTTGGA 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5