BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09780.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478301 jgi|Araly1|478301|fgenesh2_kg.3__1002__AT3G09780.1 3759 0.0
Ahg936569 jgi|Araly1|936569|scaffold_500760.1 267 4e-70
Ahg937021 jgi|Araly1|937021|scaffold_501212.1 261 2e-68
Ahg936568 jgi|Araly1|936568|scaffold_500759.1 230 5e-59
Ahg897165 jgi|Araly1|897165|Al_scaffold_0005_1131 196 5e-49
> Ahg478301 jgi|Araly1|478301|fgenesh2_kg.3__1002__AT3G09780.1
Length=2414
Score = 3759 bits (2035), Expect = 0.0
Identities = 2295/2420 (95%), Gaps = 19/2420 (1%)
Strand=Plus/Plus
Query 1 GAACTTCACCTCCAATGGAAACCCGTTGctctctcctctttctctctctcattctcCTGT 60
|||||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct 1 GAACTTCATCTCCAATGGAAGCCCATTTCTTTCTCCTCTTTCTCTCTCTCATTCTCCTGT 60
Query 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120
||||||||||||||||||||||||||||||||| || || || |||||| ||||||| |
Sbjct 61 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 120
Query 121 GCTCTGCTTTCTTCTGCGCCATTGACGCTAGTGGTCGTCAAGATGTTATCTGCTGGGG-A 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 121 GCTCTGCTTTCTTCTGCGCCATTGATGCTAGTGGTCGTCAAGATGTTATCTGCTGGGGTA 180
Query 180 AAGAACTATTCAtctccttcttctccctcttcttcttcttcttcgtcgtctattgcttct 239
|| |||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 181 AA-AACTATTCATCTCCATCTTCTCCGTCTTCTTCTTCTTCTTCCTCGTCTCTTGCTTCT 239
Query 240 tccacttccGCAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTT 299
|| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 240 TCTACTTCTGCAAGCTACAACATTCCGTCCATGGCGGTTCTTTCAGGTGGAGACGGGTTT 299
Query 300 CTCTGCGGCATTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCT 359
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 300 CTCTGCGGCATTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCT 359
Query 360 TCAGGTATGGATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGATAGCTGCT 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 360 TCAGGTATGGATCTTGTCCCTCTAGCTTACCGGACTACTGCTTACTCTCAGATTGCTGCT 419
Query 420 GGAAAC-AGCCATGTCTGTGCTGTTAGAGGAGCTTACTATTCCGATCACGATTCTGGGAC 478
|| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GG-AACAAGCCATGTCTGTGCTGTTAGAGGAGCTTACTATTCGGATCACGATTCTGGGAC 478
Query 479 TATCGATTGTTGGGAGATAACTAGAGCTACGAACAACAACAGCTTAATCGCCAAGGAGAA 538
| | ||||||||||||||| | ||||||||||| ||||||||||||||||| || |||||
Sbjct 479 TGTTGATTGTTGGGAGATAGCAAGAGCTACGAATAACAACAGCTTAATCGCGAAAGAGAA 538
Query 539 TCCTAACTTCTATGATCAGATTGTTAGTAATCTCGTCTTCAACAATATTGTTTCTGGTGA 598
||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 539 TCCAAACTTCTATGATCAGATTGTTCGTAATCTCGTCTTCAACAATATCGTTTCTGGTGA 598
Query 599 TGGGTTTAGCTGTGGTGGAATCAGAGATGGTGGGA-TGCTCTGTTTTGGTCCCAATTCTT 657
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 599 TGGGTTTAGCTGTGGTGGAATCAGAGATGGT-GGATTGCTCTGTTTTGGCCCCAATTCTT 657
Query 658 CTAATTTAGGGTTTAACACAACTTCTGATAACTTCCAAGTCTTAGCCGCCGGTAAAAACT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 CTAATTTAGGGTTTAACACAACTTCTGATAACTTCCAAGTCTTAGCCGCCGGAAAAAACT 717
Query 718 CCGTTTGTGCTATTCTTAATTTATCTCGAGAGGTTAAATGTTGGGGAGAAGATGAATCTT 777
|||||||||| ||||| || | ||| || ||||| |||||||||||||||||||||||||
Sbjct 718 CCGTTTGTGCGATTCTAAACTCATCCCGGGAGGTAAAATGTTGGGGAGAAGATGAATCTT 777
Query 778 TTGTCAATTCTCCGATGAATGATTCTCGATTCGTCTCGCTAACCGCGGGTCCTCGCCATT 837
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 TTGTTGATTCTCCGATGAATGATTCTCGATTCGTCTCGCTAACCGCTGGTCCTCGCCATT 837
Query 838 TCTGCGGAATCCGTGAGGATAATCATGAGGTTGAGTGTTGGGGAAACTCTAATTTCTCTT 897
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 TCTGCGGAATCCGTGAGGATAATCATGAGGTTGAATGTTGGGGAAACTCTAATTTCTCTT 897
Query 898 TGATTCCAAAAGGTTCTGGATTTAAAGCAATAGCTTCGTCTGATTTCATTGTTTGTGGTA 957
|||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 898 TGATTCCAAAAGGTTCCGGATTTAAGGCAATTGCTTCATCTGATTTCATTGTTTGTGGTA 957
Query 958 TTAGAGAAGAGGATCTTGTTCTTGATTGTTGGATGGTTAATGGTTCGTCCACATTAGCTT 1017
| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 958 TAAGAGAAGAGGATCTTGTTCTTGATTGCTGGATGGTTAACGGTTCGTCGACATTAGCTT 1017
Query 1018 ACGATCCTCCGTTAGAGCTCTGCAGTCCAGGGATGTGTAGAGCTGGTCCTTGTAATGAAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 ACGATCCTCCGTTAGAGCTCTGCAGTCCAGGGATGTGTAGAGCTGGTCCTTGTTATGAAA 1077
Query 1078 AAGAGTTTGCTTTCAACGCAAGTATACTCAATGAACCTGACCTAACGAGTTTGTGTGTAA 1137
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1078 AAGAGTTTGCTTTCAACGCAAGTATCCTAAATGAACCTGACCTAACGAGTTTGTGTGTAA 1137
Query 1138 GGAAAGAGTTAATGGTCTGTTCACCTTGCGGCTCGGATTGCTCTCACGGATTCTTCTTGT 1197
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGAGAGAGTTAATGGTCTGTTCACCTTGCGGCTCGGATTGCTCTCACGGATTCTTCTTGT 1197
Query 1198 CAAGTTCGTGCACCGCGAACTCTGATCGGATATGTACGCCTTGCTCGCTCTGTCAAAACA 1257
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAAGTTCGTGCACCGAGAACTCTGATCGGATATGTACGCCTTGCTCGCTCTGTCAAAACA 1257
Query 1258 GTTCTTGTTCGGATATATGTAAGCTTCATAACAGCAATTTTCCAGATAAGCATTGGCATC 1317
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTTCTTGTTCAGACATATGTAAGCTTCATAACAGCAATTTTCCAGATAAGCATTGGCATC 1317
Query 1318 AACTACAGAGACTTGTTCTTATCATCGGGTCTTGCGCATCCGCTCTATTGATCATTATAA 1377
|||||||||||||||| || |||||||| |||||||||||||||||||||||| | ||||
Sbjct 1318 AACTACAGAGACTTGTCCTCATCATCGGATCTTGCGCATCCGCTCTATTGATCCTCATAA 1377
Query 1378 TTGGTTGCTGTGTTGTGCCAC-GG--ATTGTCACTAGTCCTAATAAAGAAGACGGAGCAG 1434
||||||||||| | || |||| || || ||||||||||||||||||||||||| ||||
Sbjct 1378 TTGGTTGCTGTATCGTTCCACGGGTTATCATCACTAGTCCTAATAAAGAAGACGGCGCAG 1437
Query 1435 CGAATCAATTCAAATCTTGCATAGGAAAGCCCGATTTAGACACTGATCAGCCACTTGAAA 1494
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 CGAATCAATTCAAATCTTGTATAGGAAAGCCCGATTTAGACACTG---AGCCACTTGAAA 1494
Query 1495 ATGTATCCCCTGCTCCATCGGTAACGCCTTTTGCTCAAGTGTTTAGACTCTCTGAGCTTA 1554
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ATGTCTCCCCTGCTCCATCGGTAACGCCTTTTGCTCAAGTGTTTAGACTCTCTGAGCTTA 1554
Query 1555 AAGACGCGACCAACGGGTTTAAAGAGTTCAATGAGTTAGGCAGAGGAAGCTATGGGTTTG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAGACGCGACCAACGGGTTTAAAGAGTTCAATGAGTTAGGCAGAGGAAGCTATGGGTTTG 1614
Query 1615 TCTACAAAGCCGTGTTGGCGGACGGGAGGCAAGTAGCGGTTAAGAGAGCAAACGCAGCAA 1674
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1615 TCTACAAAGCCGTGTTGGCGGACGGGAGACAAGTAGCGGTGAAGAGAGCAAACGCAGCAA 1674
Query 1675 CCATAATCCACACAAACACTAGAGAATTCGAGACAGAATTGGAGATTCTCTGCAACATTA 1734
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1675 CCATAATCCACACAAACACTAGAGAATTTGAGACAGAATTGGAGATTCTCTGCAACATTA 1734
Query 1735 GGCATTGCAACATTGTGAATCTCCTTGGTTACTCTACCGAAATGGGAGAGAGGCTTCTTG 1794
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1735 GGCATTGCAACATTGTGAATCTCCTCGGTTACTCGACCGAAATGGGAGAGAGGCTTCTTG 1794
Query 1795 TTTACGAGTACATGCCTCACGGTACGCTTCACGATCATCTGCACAGTGGGTTTTCGCCAT 1854
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1795 TTTACGAGTACATGCCTCACGGTACGCTTCACGATCATCTACACAGTGGGTTTTCGCCAT 1854
Query 1855 TGAGTTGGAGCTTAAGGATCAAAATCGCTATGCAAACCGCAAAGGGTCTTGAGTATCTTC 1914
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1855 TGAGTTGGAGCTTAAGGATCAAAATCGCTATGCAAACCGCAAAAGGTCTTGAGTATCTAC 1914
Query 1915 ACAATGAAGCTGAGCCGAGAATCATTCATGGCGATGTGAAGTCTTCGAATGTACTATTGG 1974
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1915 ACAATGAAGCTGAGCCTAGAATCGTTCATGGCGATGTGAAGTCTTCGAATGTACTATTGG 1974
Query 1975 ACTCGGAATGGGTGGCGAGAGTTGCGGATTTCGGGCTCGTGACATCGTCGAACGAGAAGA 2034
|| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1975 ACACGGAATGGGTGGCGAGGGTTGCGGATTTCGGGTTCGTGACATCGTCGAACGAGAAGA 2034
Query 2035 ATTTGGACATCAAAAGAGATGTTTATGACTTTGGAGTTGTGCT-GTTAGAGATTTTAACC 2093
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2035 AGTTGGACATCAAAAGAGATGTTTATGACTTTGGAGTTGT-CTTGTTAGAGATTTTAACT 2093
Query 2094 GGTAGGAAACGTTATGATAGGGACTGTGATCCGCCGGAGATTGTTGAATGGACGGTTCCG 2153
|| |||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||
Sbjct 2094 GGAAGGAAACGTTATGATAGGGACTGTGATCCGCCGGAGATTGCTGAATGGGCAGTTACG 2153
Query 2154 GTGATCAGAGAAGGCAAAGCGGCGGCGATTGTGGATACGTATATTGCGTTGCCGAGAAAC 2213
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2154 GTGATCAGAGAAGGCAGAGCAGCGGCGATTGTGGATAAGTATATTGCGTTGCCGAGAAAC 2213
Query 2214 GTGGAGCCGTTGTTGAAACTTGCTGACGTGGCAGAGTTGTGTGTACGGGAGGATCCGAAT 2273
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2214 GTGGAGCCGTTGTTGAAACTTGCTGACGTGGCAGAGTTGTGTGTACGCGAGGATCCGAAT 2273
Query 2274 CAACAACCAACTATGTCGGAACTTGCGAATTGGTTGGAACATGTCGCAAGAGATGCATTG 2333
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2274 CAACGACCAACGATGTCGGAACTTGCGAATTGGTTGGAACAGGTCGCAAGAGATGCATTG 2333
Query 2334 ATCTTCTAGCTTCtt-t--tttt-t-AATGAGTGTTATTATTCTTTTATTTATGAATTCT 2388
|||||||||||| || | |||| | ||||||||||||||||||||||||||||||||||
Sbjct 2334 ATCTTCTAGCTTTTTCTAATTTTCTTAATGAGTGTTATTATTCTTTTATTTATGAATTCT 2393
Query 2389 GGTGAAATTGTATAATCAAA 2408
||||||||||||||||||||
Sbjct 2394 GGTGAAATTGTATAATCAAA 2413
> Ahg936569 jgi|Araly1|936569|scaffold_500760.1
Length=212
Score = 267 bits (144), Expect = 4e-70
Identities = 156/162 (96%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 250 CAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTTCTCTGCGGCA 309
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 CAAGCTACAACATTCCGTCCATGGCGGTTCTTTCAGGTGGAGACGGGTTTCTCTGCGGCA 60
Query 310 TTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 369
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 120
Query 370 ATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGA 411
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATCTTGTCCCTCTCGCTTACAGGACTACTGCTTACTCTCAGA 162
> Ahg937021 jgi|Araly1|937021|scaffold_501212.1
Length=212
Score = 261 bits (141), Expect = 2e-68
Identities = 155/162 (96%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 250 CAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTTCTCTGCGGCA 309
||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1 CAAGCTACAACATTCCGTCCATGGCGGCTCTTTCAGGTGGAGACGGGTTTCTCTGCGGCA 60
Query 310 TTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 369
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 120
Query 370 ATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGA 411
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATCTTGTCCCTCTCGCTTACAGGACTACTGCTTACTCTCAGA 162
> Ahg936568 jgi|Araly1|936568|scaffold_500759.1
Length=416
Score = 230 bits (124), Expect = 5e-59
Identities = 150/163 (92%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 1 GAACTTCACCTCCAATGGAAACCCGTTGctctctcctctttctctctctcattctcCTGT 60
|||||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct 163 GAACTTCATCTCCAATGGAAGCCCATTTCTTTCTCCTCTTTCTCTCTCTCATTCTCCTGT 104
Query 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120
||||||||||||||||||||||||||||||||| || || || |||||| ||||||| |
Sbjct 103 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 44
Query 121 GCTCTGCTTTCTTCTGCGCCATTGACGCTAGTGGTCGTCAAGA 163
||||||||||||||||||||||||| |||||||||||||||||
Sbjct 43 GCTCTGCTTTCTTCTGCGCCATTGATGCTAGTGGTCGTCAAGA 1
> Ahg897165 jgi|Araly1|897165|Al_scaffold_0005_1131
Length=390
Score = 196 bits (106), Expect = 5e-49
Identities = 130/142 (92%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 1 GAACTTCACCTCCAATGGAAACCCGTTGctctctcctctttctctctctcattctcCTGT 60
|||||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct 142 GAACTTCATCTCCAATGGAAGCCCATTTCTTTCTCCTCTTTCTCTCTCTCATTCTCCTGT 83
Query 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120
||||||||||||||||||||||||||||||||| || || || |||||| ||||||| |
Sbjct 82 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 23
Query 121 GCTCTGCTTTCTTCTGCGCCAT 142
||||||||||||||||||||||
Sbjct 22 GCTCTGCTTTCTTCTGCGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5