BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09780.1 Length=2421 Score E Sequences producing significant alignments: (Bits) Value Ahg478301 jgi|Araly1|478301|fgenesh2_kg.3__1002__AT3G09780.1 3759 0.0 Ahg936569 jgi|Araly1|936569|scaffold_500760.1 267 4e-70 Ahg937021 jgi|Araly1|937021|scaffold_501212.1 261 2e-68 Ahg936568 jgi|Araly1|936568|scaffold_500759.1 230 5e-59 Ahg897165 jgi|Araly1|897165|Al_scaffold_0005_1131 196 5e-49 > Ahg478301 jgi|Araly1|478301|fgenesh2_kg.3__1002__AT3G09780.1 Length=2414 Score = 3759 bits (2035), Expect = 0.0 Identities = 2295/2420 (95%), Gaps = 19/2420 (1%) Strand=Plus/Plus Query 1 GAACTTCACCTCCAATGGAAACCCGTTGctctctcctctttctctctctcattctcCTGT 60 |||||||| ||||||||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 1 GAACTTCATCTCCAATGGAAGCCCATTTCTTTCTCCTCTTTCTCTCTCTCATTCTCCTGT 60 Query 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120 ||||||||||||||||||||||||||||||||| || || || |||||| ||||||| | Sbjct 61 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 120 Query 121 GCTCTGCTTTCTTCTGCGCCATTGACGCTAGTGGTCGTCAAGATGTTATCTGCTGGGG-A 179 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 121 GCTCTGCTTTCTTCTGCGCCATTGATGCTAGTGGTCGTCAAGATGTTATCTGCTGGGGTA 180 Query 180 AAGAACTATTCAtctccttcttctccctcttcttcttcttcttcgtcgtctattgcttct 239 || |||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||| Sbjct 181 AA-AACTATTCATCTCCATCTTCTCCGTCTTCTTCTTCTTCTTCCTCGTCTCTTGCTTCT 239 Query 240 tccacttccGCAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTT 299 || ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 240 TCTACTTCTGCAAGCTACAACATTCCGTCCATGGCGGTTCTTTCAGGTGGAGACGGGTTT 299 Query 300 CTCTGCGGCATTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCT 359 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 300 CTCTGCGGCATTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCT 359 Query 360 TCAGGTATGGATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGATAGCTGCT 419 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 360 TCAGGTATGGATCTTGTCCCTCTAGCTTACCGGACTACTGCTTACTCTCAGATTGCTGCT 419 Query 420 GGAAAC-AGCCATGTCTGTGCTGTTAGAGGAGCTTACTATTCCGATCACGATTCTGGGAC 478 || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 GG-AACAAGCCATGTCTGTGCTGTTAGAGGAGCTTACTATTCGGATCACGATTCTGGGAC 478 Query 479 TATCGATTGTTGGGAGATAACTAGAGCTACGAACAACAACAGCTTAATCGCCAAGGAGAA 538 | | ||||||||||||||| | ||||||||||| ||||||||||||||||| || ||||| Sbjct 479 TGTTGATTGTTGGGAGATAGCAAGAGCTACGAATAACAACAGCTTAATCGCGAAAGAGAA 538 Query 539 TCCTAACTTCTATGATCAGATTGTTAGTAATCTCGTCTTCAACAATATTGTTTCTGGTGA 598 ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 539 TCCAAACTTCTATGATCAGATTGTTCGTAATCTCGTCTTCAACAATATCGTTTCTGGTGA 598 Query 599 TGGGTTTAGCTGTGGTGGAATCAGAGATGGTGGGA-TGCTCTGTTTTGGTCCCAATTCTT 657 ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| Sbjct 599 TGGGTTTAGCTGTGGTGGAATCAGAGATGGT-GGATTGCTCTGTTTTGGCCCCAATTCTT 657 Query 658 CTAATTTAGGGTTTAACACAACTTCTGATAACTTCCAAGTCTTAGCCGCCGGTAAAAACT 717 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 658 CTAATTTAGGGTTTAACACAACTTCTGATAACTTCCAAGTCTTAGCCGCCGGAAAAAACT 717 Query 718 CCGTTTGTGCTATTCTTAATTTATCTCGAGAGGTTAAATGTTGGGGAGAAGATGAATCTT 777 |||||||||| ||||| || | ||| || ||||| ||||||||||||||||||||||||| Sbjct 718 CCGTTTGTGCGATTCTAAACTCATCCCGGGAGGTAAAATGTTGGGGAGAAGATGAATCTT 777 Query 778 TTGTCAATTCTCCGATGAATGATTCTCGATTCGTCTCGCTAACCGCGGGTCCTCGCCATT 837 |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 778 TTGTTGATTCTCCGATGAATGATTCTCGATTCGTCTCGCTAACCGCTGGTCCTCGCCATT 837 Query 838 TCTGCGGAATCCGTGAGGATAATCATGAGGTTGAGTGTTGGGGAAACTCTAATTTCTCTT 897 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 838 TCTGCGGAATCCGTGAGGATAATCATGAGGTTGAATGTTGGGGAAACTCTAATTTCTCTT 897 Query 898 TGATTCCAAAAGGTTCTGGATTTAAAGCAATAGCTTCGTCTGATTTCATTGTTTGTGGTA 957 |||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 898 TGATTCCAAAAGGTTCCGGATTTAAGGCAATTGCTTCATCTGATTTCATTGTTTGTGGTA 957 Query 958 TTAGAGAAGAGGATCTTGTTCTTGATTGTTGGATGGTTAATGGTTCGTCCACATTAGCTT 1017 | |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 958 TAAGAGAAGAGGATCTTGTTCTTGATTGCTGGATGGTTAACGGTTCGTCGACATTAGCTT 1017 Query 1018 ACGATCCTCCGTTAGAGCTCTGCAGTCCAGGGATGTGTAGAGCTGGTCCTTGTAATGAAA 1077 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1018 ACGATCCTCCGTTAGAGCTCTGCAGTCCAGGGATGTGTAGAGCTGGTCCTTGTTATGAAA 1077 Query 1078 AAGAGTTTGCTTTCAACGCAAGTATACTCAATGAACCTGACCTAACGAGTTTGTGTGTAA 1137 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1078 AAGAGTTTGCTTTCAACGCAAGTATCCTAAATGAACCTGACCTAACGAGTTTGTGTGTAA 1137 Query 1138 GGAAAGAGTTAATGGTCTGTTCACCTTGCGGCTCGGATTGCTCTCACGGATTCTTCTTGT 1197 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 GGAGAGAGTTAATGGTCTGTTCACCTTGCGGCTCGGATTGCTCTCACGGATTCTTCTTGT 1197 Query 1198 CAAGTTCGTGCACCGCGAACTCTGATCGGATATGTACGCCTTGCTCGCTCTGTCAAAACA 1257 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CAAGTTCGTGCACCGAGAACTCTGATCGGATATGTACGCCTTGCTCGCTCTGTCAAAACA 1257 Query 1258 GTTCTTGTTCGGATATATGTAAGCTTCATAACAGCAATTTTCCAGATAAGCATTGGCATC 1317 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 GTTCTTGTTCAGACATATGTAAGCTTCATAACAGCAATTTTCCAGATAAGCATTGGCATC 1317 Query 1318 AACTACAGAGACTTGTTCTTATCATCGGGTCTTGCGCATCCGCTCTATTGATCATTATAA 1377 |||||||||||||||| || |||||||| |||||||||||||||||||||||| | |||| Sbjct 1318 AACTACAGAGACTTGTCCTCATCATCGGATCTTGCGCATCCGCTCTATTGATCCTCATAA 1377 Query 1378 TTGGTTGCTGTGTTGTGCCAC-GG--ATTGTCACTAGTCCTAATAAAGAAGACGGAGCAG 1434 ||||||||||| | || |||| || || ||||||||||||||||||||||||| |||| Sbjct 1378 TTGGTTGCTGTATCGTTCCACGGGTTATCATCACTAGTCCTAATAAAGAAGACGGCGCAG 1437 Query 1435 CGAATCAATTCAAATCTTGCATAGGAAAGCCCGATTTAGACACTGATCAGCCACTTGAAA 1494 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1438 CGAATCAATTCAAATCTTGTATAGGAAAGCCCGATTTAGACACTG---AGCCACTTGAAA 1494 Query 1495 ATGTATCCCCTGCTCCATCGGTAACGCCTTTTGCTCAAGTGTTTAGACTCTCTGAGCTTA 1554 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 ATGTCTCCCCTGCTCCATCGGTAACGCCTTTTGCTCAAGTGTTTAGACTCTCTGAGCTTA 1554 Query 1555 AAGACGCGACCAACGGGTTTAAAGAGTTCAATGAGTTAGGCAGAGGAAGCTATGGGTTTG 1614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 AAGACGCGACCAACGGGTTTAAAGAGTTCAATGAGTTAGGCAGAGGAAGCTATGGGTTTG 1614 Query 1615 TCTACAAAGCCGTGTTGGCGGACGGGAGGCAAGTAGCGGTTAAGAGAGCAAACGCAGCAA 1674 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1615 TCTACAAAGCCGTGTTGGCGGACGGGAGACAAGTAGCGGTGAAGAGAGCAAACGCAGCAA 1674 Query 1675 CCATAATCCACACAAACACTAGAGAATTCGAGACAGAATTGGAGATTCTCTGCAACATTA 1734 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1675 CCATAATCCACACAAACACTAGAGAATTTGAGACAGAATTGGAGATTCTCTGCAACATTA 1734 Query 1735 GGCATTGCAACATTGTGAATCTCCTTGGTTACTCTACCGAAATGGGAGAGAGGCTTCTTG 1794 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1735 GGCATTGCAACATTGTGAATCTCCTCGGTTACTCGACCGAAATGGGAGAGAGGCTTCTTG 1794 Query 1795 TTTACGAGTACATGCCTCACGGTACGCTTCACGATCATCTGCACAGTGGGTTTTCGCCAT 1854 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1795 TTTACGAGTACATGCCTCACGGTACGCTTCACGATCATCTACACAGTGGGTTTTCGCCAT 1854 Query 1855 TGAGTTGGAGCTTAAGGATCAAAATCGCTATGCAAACCGCAAAGGGTCTTGAGTATCTTC 1914 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1855 TGAGTTGGAGCTTAAGGATCAAAATCGCTATGCAAACCGCAAAAGGTCTTGAGTATCTAC 1914 Query 1915 ACAATGAAGCTGAGCCGAGAATCATTCATGGCGATGTGAAGTCTTCGAATGTACTATTGG 1974 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1915 ACAATGAAGCTGAGCCTAGAATCGTTCATGGCGATGTGAAGTCTTCGAATGTACTATTGG 1974 Query 1975 ACTCGGAATGGGTGGCGAGAGTTGCGGATTTCGGGCTCGTGACATCGTCGAACGAGAAGA 2034 || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 1975 ACACGGAATGGGTGGCGAGGGTTGCGGATTTCGGGTTCGTGACATCGTCGAACGAGAAGA 2034 Query 2035 ATTTGGACATCAAAAGAGATGTTTATGACTTTGGAGTTGTGCT-GTTAGAGATTTTAACC 2093 | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 2035 AGTTGGACATCAAAAGAGATGTTTATGACTTTGGAGTTGT-CTTGTTAGAGATTTTAACT 2093 Query 2094 GGTAGGAAACGTTATGATAGGGACTGTGATCCGCCGGAGATTGTTGAATGGACGGTTCCG 2153 || |||||||||||||||||||||||||||||||||||||||| ||||||| | ||| || Sbjct 2094 GGAAGGAAACGTTATGATAGGGACTGTGATCCGCCGGAGATTGCTGAATGGGCAGTTACG 2153 Query 2154 GTGATCAGAGAAGGCAAAGCGGCGGCGATTGTGGATACGTATATTGCGTTGCCGAGAAAC 2213 |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| Sbjct 2154 GTGATCAGAGAAGGCAGAGCAGCGGCGATTGTGGATAAGTATATTGCGTTGCCGAGAAAC 2213 Query 2214 GTGGAGCCGTTGTTGAAACTTGCTGACGTGGCAGAGTTGTGTGTACGGGAGGATCCGAAT 2273 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2214 GTGGAGCCGTTGTTGAAACTTGCTGACGTGGCAGAGTTGTGTGTACGCGAGGATCCGAAT 2273 Query 2274 CAACAACCAACTATGTCGGAACTTGCGAATTGGTTGGAACATGTCGCAAGAGATGCATTG 2333 |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2274 CAACGACCAACGATGTCGGAACTTGCGAATTGGTTGGAACAGGTCGCAAGAGATGCATTG 2333 Query 2334 ATCTTCTAGCTTCtt-t--tttt-t-AATGAGTGTTATTATTCTTTTATTTATGAATTCT 2388 |||||||||||| || | |||| | |||||||||||||||||||||||||||||||||| Sbjct 2334 ATCTTCTAGCTTTTTCTAATTTTCTTAATGAGTGTTATTATTCTTTTATTTATGAATTCT 2393 Query 2389 GGTGAAATTGTATAATCAAA 2408 |||||||||||||||||||| Sbjct 2394 GGTGAAATTGTATAATCAAA 2413 > Ahg936569 jgi|Araly1|936569|scaffold_500760.1 Length=212 Score = 267 bits (144), Expect = 4e-70 Identities = 156/162 (96%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 250 CAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTTCTCTGCGGCA 309 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1 CAAGCTACAACATTCCGTCCATGGCGGTTCTTTCAGGTGGAGACGGGTTTCTCTGCGGCA 60 Query 310 TTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 369 ||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 61 TTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 120 Query 370 ATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGA 411 ||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 ATCTTGTCCCTCTCGCTTACAGGACTACTGCTTACTCTCAGA 162 > Ahg937021 jgi|Araly1|937021|scaffold_501212.1 Length=212 Score = 261 bits (141), Expect = 2e-68 Identities = 155/162 (96%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 250 CAAGCTACAACATTCCGTCAATGGCGGTTCTTTCAGGCGGAGACGGGTTTCTCTGCGGCA 309 ||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| Sbjct 1 CAAGCTACAACATTCCGTCCATGGCGGCTCTTTCAGGTGGAGACGGGTTTCTCTGCGGCA 60 Query 310 TTTTGTCGAACACTTCTCAAGCATTCTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 369 ||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| Sbjct 61 TTTTGTCGAACACTTCTCAGGCGTTTTGTTTTAGTTCACTTGGGTCTTCTTCAGGTATGG 120 Query 370 ATCTTGTCCCTCTAGCTTACAGGACTACTGCTTACTCTCAGA 411 ||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 ATCTTGTCCCTCTCGCTTACAGGACTACTGCTTACTCTCAGA 162 > Ahg936568 jgi|Araly1|936568|scaffold_500759.1 Length=416 Score = 230 bits (124), Expect = 5e-59 Identities = 150/163 (92%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1 GAACTTCACCTCCAATGGAAACCCGTTGctctctcctctttctctctctcattctcCTGT 60 |||||||| ||||||||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 163 GAACTTCATCTCCAATGGAAGCCCATTTCTTTCTCCTCTTTCTCTCTCTCATTCTCCTGT 104 Query 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120 ||||||||||||||||||||||||||||||||| || || || |||||| ||||||| | Sbjct 103 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 44 Query 121 GCTCTGCTTTCTTCTGCGCCATTGACGCTAGTGGTCGTCAAGA 163 ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 43 GCTCTGCTTTCTTCTGCGCCATTGATGCTAGTGGTCGTCAAGA 1 > Ahg897165 jgi|Araly1|897165|Al_scaffold_0005_1131 Length=390 Score = 196 bits (106), Expect = 5e-49 Identities = 130/142 (92%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1 GAACTTCACCTCCAATGGAAACCCGTTGctctctcctctttctctctctcattctcCTGT 60 |||||||| ||||||||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 142 GAACTTCATCTCCAATGGAAGCCCATTTCTTTCTCCTCTTTCTCTCTCTCATTCTCCTGT 83 Query 61 ATTTGCCCAAACCCGGATCCGGATTTGGATCCTCCGGTCCGATTGCGGCGTCGTTCGGCG 120 ||||||||||||||||||||||||||||||||| || || || |||||| ||||||| | Sbjct 82 TTTTGCCCAAACCCGGATCCGGATTTGGATCCTCTGGCCCAATCGCGGCGGCGTTCGGTG 23 Query 121 GCTCTGCTTTCTTCTGCGCCAT 142 |||||||||||||||||||||| Sbjct 22 GCTCTGCTTTCTTCTGCGCCAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91226136775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5